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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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|
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HOW TO USE
tRNA gene List
[OJSU] human gut metagenome; human gut
HIT:
77 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182797176
OJSU01000041
[OJSU] human gut metagenome; human gut
105
180
+
Trp
CCA
[ENA]
¢þ
>WENV182797175
OJSU01000038
[OJSU] human gut metagenome; human gut
124
37
-
Ser
GGA
[ENA]
¢þ
>WENV182797189
OJSU01000075
[OJSU] human gut metagenome; human gut
151
59
-
Ser
GCT
[ENA]
¢þ
>WENV182797213
OJSU01001593
[OJSU] human gut metagenome; human gut
156
81
-
Ile
GAT
[ENA]
¢þ
>WENV182797144
OJSU01000009
[OJSU] human gut metagenome; human gut
171
85
-
Leu
CAG
[ENA]
¢þ
>WENV182797201
OJSU01000541
[OJSU] human gut metagenome; human gut
197
126
-
Trp
CCA
[ENA]
¢þ
>WENV182797212
OJSU01001593
[OJSU] human gut metagenome; human gut
235
165
-
Gly
TCC
[ENA]
¢þ
>WENV182797208
OJSU01001524
[OJSU] human gut metagenome; human gut
236
311
+
Arg
TCT
[ENA]
¢þ
>WENV182797211
OJSU01001593
[OJSU] human gut metagenome; human gut
313
237
-
Asp
GTC
[ENA]
¢þ
>WENV182797206
OJSU01000936
[OJSU] human gut metagenome; human gut
357
284
-
Gln
TTG
[ENA]
¢þ
>WENV182797207
OJSU01001435
[OJSU] human gut metagenome; human gut
362
435
+
Asn
GTT
[ENA]
¢þ
>WENV182797210
OJSU01001593
[OJSU] human gut metagenome; human gut
426
351
-
fMet
CAT
[ENA]
¢þ
>WENV182797205
OJSU01000936
[OJSU] human gut metagenome; human gut
443
370
-
His
GTG
[ENA]
¢þ
>WENV182797209
OJSU01001593
[OJSU] human gut metagenome; human gut
548
459
-
Ser
TGA
[ENA]
¢þ
>WENV182797204
OJSU01000936
[OJSU] human gut metagenome; human gut
553
480
-
Trp
CCA
[ENA]
¢þ
>WENV182797203
OJSU01000936
[OJSU] human gut metagenome; human gut
639
557
-
Tyr
GTA
[ENA]
¢þ
>WENV182797202
OJSU01000936
[OJSU] human gut metagenome; human gut
793
720
-
fMet
CAT
[ENA]
¢þ
>WENV182797187
OJSU01000072
[OJSU] human gut metagenome; human gut
2288
2363
+
Thr
CGT
[ENA]
¢þ
>WENV182797174
OJSU01000038
[OJSU] human gut metagenome; human gut
3205
3118
-
Ser
GGA
[ENA]
¢þ
>WENV182797190
OJSU01000121
[OJSU] human gut metagenome; human gut
3413
3487
+
Val
TAC
[ENA]
¢þ
>WENV182797191
OJSU01000121
[OJSU] human gut metagenome; human gut
3492
3566
+
Lys
TTT
[ENA]
¢þ
>WENV182797192
OJSU01000121
[OJSU] human gut metagenome; human gut
3581
3664
+
Leu
TAG
[ENA]
¢þ
>WENV182797198
OJSU01000128
[OJSU] human gut metagenome; human gut
3619
3694
+
Thr
TGT
[ENA]
¢þ
>WENV182797193
OJSU01000121
[OJSU] human gut metagenome; human gut
3670
3745
+
Thr
TGT
[ENA]
¢þ
>WENV182797199
OJSU01000128
[OJSU] human gut metagenome; human gut
3705
3789
+
Tyr
GTA
[ENA]
¢þ
>WENV182797194
OJSU01000121
[OJSU] human gut metagenome; human gut
3750
3821
+
Gly
GCC
[ENA]
¢þ
>WENV182797195
OJSU01000121
[OJSU] human gut metagenome; human gut
3837
3922
+
Leu
TAA
[ENA]
¢þ
>WENV182797200
OJSU01000128
[OJSU] human gut metagenome; human gut
3905
3979
+
Gly
TCC
[ENA]
¢þ
>WENV182797196
OJSU01000121
[OJSU] human gut metagenome; human gut
3937
4010
+
Arg
ACG
[ENA]
¢þ
>WENV182797197
OJSU01000121
[OJSU] human gut metagenome; human gut
4022
4095
+
Pro
TGG
[ENA]
¢þ
>WENV182797173
OJSU01000033
[OJSU] human gut metagenome; human gut
4729
4645
-
Leu
CAA
[ENA]
¢þ
>WENV182797184
OJSU01000044
[OJSU] human gut metagenome; human gut
5028
5122
+
SeC
TCA
[ENA]
¢þ
>WENV182797163
OJSU01000023
[OJSU] human gut metagenome; human gut
12596
12672
+
Pro
CGG
[ENA]
¢þ
>WENV182797172
OJSU01000032
[OJSU] human gut metagenome; human gut
16665
16590
-
Asn
GTT
[ENA]
¢þ
>WENV182797165
OJSU01000032
[OJSU] human gut metagenome; human gut
18422
18497
+
Asn
GTT
[ENA]
¢þ
>WENV182797188
OJSU01000073
[OJSU] human gut metagenome; human gut
18591
18665
+
Gly
TCC
[ENA]
¢þ
>WENV182797183
OJSU01000043
[OJSU] human gut metagenome; human gut
21396
21309
-
Ser
TGA
[ENA]
¢þ
>WENV182797162
OJSU01000019
[OJSU] human gut metagenome; human gut
22051
21977
-
Gln
CTG
[ENA]
¢þ
>WENV182797161
OJSU01000019
[OJSU] human gut metagenome; human gut
22202
22128
-
Gln
CTG
[ENA]
¢þ
>WENV182797160
OJSU01000019
[OJSU] human gut metagenome; human gut
22326
22250
-
Met
CAT
[ENA]
¢þ
>WENV182797159
OJSU01000019
[OJSU] human gut metagenome; human gut
22424
22350
-
Gln
TTG
[ENA]
¢þ
>WENV182797158
OJSU01000019
[OJSU] human gut metagenome; human gut
22535
22461
-
Gln
TTG
[ENA]
¢þ
>WENV182797157
OJSU01000019
[OJSU] human gut metagenome; human gut
22643
22559
-
Leu
TAG
[ENA]
¢þ
>WENV182797156
OJSU01000019
[OJSU] human gut metagenome; human gut
22729
22653
-
Met
CAT
[ENA]
¢þ
>WENV182797185
OJSU01000046
[OJSU] human gut metagenome; human gut
24196
24271
+
Phe
GAA
[ENA]
¢þ
>WENV182797171
OJSU01000032
[OJSU] human gut metagenome; human gut
27325
27250
-
Asn
GTT
[ENA]
¢þ
>WENV182797186
OJSU01000057
[OJSU] human gut metagenome; human gut
28713
28637
-
Arg
ACG
[ENA]
¢þ
>WENV182797170
OJSU01000032
[OJSU] human gut metagenome; human gut
30815
30740
-
Asn
GTT
[ENA]
¢þ
>WENV182797147
OJSU01000012
[OJSU] human gut metagenome; human gut
31071
31147
+
Val
GAC
[ENA]
¢þ
>WENV182797148
OJSU01000012
[OJSU] human gut metagenome; human gut
31152
31228
+
Val
GAC
[ENA]
¢þ
>WENV182797149
OJSU01000012
[OJSU] human gut metagenome; human gut
31233
31309
+
Val
GAC
[ENA]
¢þ
>WENV182797166
OJSU01000032
[OJSU] human gut metagenome; human gut
31807
31896
+
Ser
CGA
[ENA]
¢þ
>WENV182797182
OJSU01000042
[OJSU] human gut metagenome; human gut
34801
34725
-
Asp
GTC
[ENA]
¢þ
>WENV182797177
OJSU01000041
[OJSU] human gut metagenome; human gut
35381
35457
+
Arg
CCG
[ENA]
¢þ
>WENV182797178
OJSU01000041
[OJSU] human gut metagenome; human gut
35513
35588
+
His
GTG
[ENA]
¢þ
>WENV182797179
OJSU01000041
[OJSU] human gut metagenome; human gut
35612
35698
+
Leu
CAG
[ENA]
¢þ
>WENV182797180
OJSU01000041
[OJSU] human gut metagenome; human gut
35741
35817
+
Pro
TGG
[ENA]
¢þ
>WENV182797181
OJSU01000042
[OJSU] human gut metagenome; human gut
44240
44164
-
Asp
GTC
[ENA]
¢þ
>WENV182797164
OJSU01000029
[OJSU] human gut metagenome; human gut
46086
46161
+
Ile2
CAT
[ENA]
¢þ
>WENV182797167
OJSU01000032
[OJSU] human gut metagenome; human gut
52997
53072
+
Gly
GCC
[ENA]
¢þ
>WENV182797168
OJSU01000032
[OJSU] human gut metagenome; human gut
53113
53186
+
Cys
GCA
[ENA]
¢þ
>WENV182797169
OJSU01000032
[OJSU] human gut metagenome; human gut
53200
53286
+
Leu
TAA
[ENA]
¢þ
>WENV182797141
OJSU01000002
[OJSU] human gut metagenome; human gut
62456
62529
+
Gly
CCC
[ENA]
¢þ
>WENV182797145
OJSU01000010
[OJSU] human gut metagenome; human gut
66717
66641
-
Arg
TCT
[ENA]
¢þ
>WENV182797152
OJSU01000013
[OJSU] human gut metagenome; human gut
78341
78266
-
Gly
GCC
[ENA]
¢þ
>WENV182797151
OJSU01000013
[OJSU] human gut metagenome; human gut
78485
78410
-
Gly
GCC
[ENA]
¢þ
>WENV182797150
OJSU01000013
[OJSU] human gut metagenome; human gut
78629
78554
-
Gly
GCC
[ENA]
¢þ
>WENV182797143
OJSU01000004
[OJSU] human gut metagenome; human gut
82909
82833
-
fMet
CAT
[ENA]
¢þ
>WENV182797142
OJSU01000004
[OJSU] human gut metagenome; human gut
86942
86856
-
Leu
GAG
[ENA]
¢þ
>WENV182797154
OJSU01000016
[OJSU] human gut metagenome; human gut
91019
91103
+
Tyr
GTA
[ENA]
¢þ
>WENV182797155
OJSU01000016
[OJSU] human gut metagenome; human gut
91142
91226
+
Tyr
GTA
[ENA]
¢þ
>WENV182797153
OJSU01000014
[OJSU] human gut metagenome; human gut
104766
104680
-
Leu
CAG
[ENA]
¢þ
>WENV182797146
OJSU01000011
[OJSU] human gut metagenome; human gut
119830
119755
-
Lys
TTT
[ENA]
¢þ
>WENV182797137
OJSU01000001
[OJSU] human gut metagenome; human gut
186065
186141
+
Pro
GGG
[ENA]
¢þ
>WENV182797138
OJSU01000001
[OJSU] human gut metagenome; human gut
308076
308150
+
Arg
CCT
[ENA]
¢þ
>WENV182797140
OJSU01000001
[OJSU] human gut metagenome; human gut
330116
330041
-
Ala
GGC
[ENA]
¢þ
>WENV182797139
OJSU01000001
[OJSU] human gut metagenome; human gut
330233
330158
-
Ala
GGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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