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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OJSV] human gut metagenome; human gut
HIT:
33 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182797241
OJSV01001733
[OJSV] human gut metagenome; human gut
62
137
+
Thr
GGT
[ENA]
¢þ
>WENV182797229
OJSV01000640
[OJSV] human gut metagenome; human gut
64
148
+
Leu
TAG
[ENA]
¢þ
>WENV182797237
OJSV01000908
[OJSV] human gut metagenome; human gut
140
66
-
Arg
CCT
[ENA]
¢þ
>WENV182797230
OJSV01000640
[OJSV] human gut metagenome; human gut
172
246
+
Gln
TTG
[ENA]
¢þ
>WENV182797246
OJSV01002315
[OJSV] human gut metagenome; human gut
263
174
-
Ser
CGA
[ENA]
¢þ
>WENV182797231
OJSV01000640
[OJSV] human gut metagenome; human gut
270
346
+
Met
CAT
[ENA]
¢þ
>WENV182797232
OJSV01000640
[OJSV] human gut metagenome; human gut
394
468
+
Gln
CTG
[ENA]
¢þ
>WENV182797243
OJSV01002208
[OJSV] human gut metagenome; human gut
452
358
-
SeC
TCA
[ENA]
¢þ
>WENV182797245
OJSV01002217
[OJSV] human gut metagenome; human gut
585
509
-
Val
GAC
[ENA]
¢þ
>WENV182797242
OJSV01002016
[OJSV] human gut metagenome; human gut
586
499
-
Ser
TGA
[ENA]
¢þ
>WENV182797244
OJSV01002217
[OJSV] human gut metagenome; human gut
666
590
-
Val
GAC
[ENA]
¢þ
>WENV182797214
OJSV01000028
[OJSV] human gut metagenome; human gut
692
616
-
Pro
GGG
[ENA]
¢þ
>WENV182797224
OJSV01000383
[OJSV] human gut metagenome; human gut
708
783
+
Thr
CGT
[ENA]
¢þ
>WENV182797227
OJSV01000548
[OJSV] human gut metagenome; human gut
916
840
-
Arg
ACG
[ENA]
¢þ
>WENV182797238
OJSV01001110
[OJSV] human gut metagenome; human gut
981
1056
+
Ala
GGC
[ENA]
¢þ
>WENV182797226
OJSV01000548
[OJSV] human gut metagenome; human gut
1013
921
-
Ser
GCT
[ENA]
¢þ
>WENV182797240
OJSV01001520
[OJSV] human gut metagenome; human gut
1020
1096
+
Arg
CCG
[ENA]
¢þ
>WENV182797225
OJSV01000491
[OJSV] human gut metagenome; human gut
1054
1140
+
Leu
GAG
[ENA]
¢þ
>WENV182797216
OJSV01000062
[OJSV] human gut metagenome; human gut
1072
1145
+
Gly
CCC
[ENA]
¢þ
>WENV182797239
OJSV01001253
[OJSV] human gut metagenome; human gut
1252
1328
+
Arg
TCT
[ENA]
¢þ
>WENV182797222
OJSV01000249
[OJSV] human gut metagenome; human gut
1258
1333
+
Gly
GCC
[ENA]
¢þ
>WENV182797235
OJSV01000729
[OJSV] human gut metagenome; human gut
1330
1255
-
Lys
TTT
[ENA]
¢þ
>WENV182797234
OJSV01000729
[OJSV] human gut metagenome; human gut
1410
1335
-
Val
TAC
[ENA]
¢þ
>WENV182797236
OJSV01000883
[OJSV] human gut metagenome; human gut
1676
1592
-
Leu
CAA
[ENA]
¢þ
>WENV182797220
OJSV01000119
[OJSV] human gut metagenome; human gut
1900
1976
+
Pro
CGG
[ENA]
¢þ
>WENV182797233
OJSV01000648
[OJSV] human gut metagenome; human gut
2121
2195
+
Gly
TCC
[ENA]
¢þ
>WENV182797228
OJSV01000593
[OJSV] human gut metagenome; human gut
2251
2175
-
Asp
GTC
[ENA]
¢þ
>WENV182797223
OJSV01000314
[OJSV] human gut metagenome; human gut
2813
2738
-
Ile2
CAT
[ENA]
¢þ
>WENV182797221
OJSV01000189
[OJSV] human gut metagenome; human gut
3132
3208
+
fMet
CAT
[ENA]
¢þ
>WENV182797218
OJSV01000099
[OJSV] human gut metagenome; human gut
3722
3646
-
fMet
CAT
[ENA]
¢þ
>WENV182797217
OJSV01000069
[OJSV] human gut metagenome; human gut
3794
3881
+
Ser
GGA
[ENA]
¢þ
>WENV182797215
OJSV01000045
[OJSV] human gut metagenome; human gut
4282
4357
+
Phe
GAA
[ENA]
¢þ
>WENV182797219
OJSV01000113
[OJSV] human gut metagenome; human gut
4367
4451
+
Tyr
GTA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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