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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA gene List
[OJSX] human gut metagenome; human gut
HIT:
127 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182797398
OJSX01000158
[OJSX] human gut metagenome; human gut
96
179
+
Leu
CAA
[ENA]
¢þ
>WENV182797382
OJSX01000039
[OJSX] human gut metagenome; human gut
144
69
-
Ala
TGC
[ENA]
¢þ
>WENV182797410
OJSX01001016
[OJSX] human gut metagenome; human gut
148
63
-
Leu
CAG
[ENA]
¢þ
>WENV182797336
OJSX01000011
[OJSX] human gut metagenome; human gut
156
81
-
His
GTG
[ENA]
¢þ
>WENV182797412
OJSX01001231
[OJSX] human gut metagenome; human gut
222
149
-
Arg
CCT
[ENA]
¢þ
>WENV182797317
OJSX01000007
[OJSX] human gut metagenome; human gut
232
157
-
Thr
GGT
[ENA]
¢þ
>WENV182797381
OJSX01000039
[OJSX] human gut metagenome; human gut
232
158
-
Pro
TGG
[ENA]
¢þ
>WENV182797335
OJSX01000011
[OJSX] human gut metagenome; human gut
263
187
-
Arg
CCG
[ENA]
¢þ
>WENV182797409
OJSX01000866
[OJSX] human gut metagenome; human gut
301
391
+
Ser
GCT
[ENA]
¢þ
>WENV182797316
OJSX01000007
[OJSX] human gut metagenome; human gut
310
236
-
Gly
TCC
[ENA]
¢þ
>WENV182797380
OJSX01000039
[OJSX] human gut metagenome; human gut
335
259
-
Arg
ACG
[ENA]
¢þ
>WENV182797413
OJSX01001493
[OJSX] human gut metagenome; human gut
386
299
-
Leu
GAG
[ENA]
¢þ
>WENV182797379
OJSX01000039
[OJSX] human gut metagenome; human gut
436
348
-
Leu
TAA
[ENA]
¢þ
>WENV182797315
OJSX01000007
[OJSX] human gut metagenome; human gut
436
352
-
Tyr
GTA
[ENA]
¢þ
>WENV182797378
OJSX01000039
[OJSX] human gut metagenome; human gut
522
448
-
Gly
GCC
[ENA]
¢þ
>WENV182797314
OJSX01000007
[OJSX] human gut metagenome; human gut
542
467
-
Thr
TGT
[ENA]
¢þ
>WENV182797405
OJSX01000781
[OJSX] human gut metagenome; human gut
561
634
+
Leu
TAA
[ENA]
¢þ
>WENV182797406
OJSX01000791
[OJSX] human gut metagenome; human gut
589
663
+
Val
GAC
[ENA]
¢þ
>WENV182797377
OJSX01000039
[OJSX] human gut metagenome; human gut
614
540
-
Lys
TTT
[ENA]
¢þ
>WENV182797411
OJSX01001129
[OJSX] human gut metagenome; human gut
628
701
+
Ala
CGC
[ENA]
¢þ
>WENV182797408
OJSX01000807
[OJSX] human gut metagenome; human gut
676
602
-
Pro
GGG
[ENA]
¢þ
>WENV182797376
OJSX01000039
[OJSX] human gut metagenome; human gut
695
620
-
Thr
TGT
[ENA]
¢þ
>WENV182797404
OJSX01000736
[OJSX] human gut metagenome; human gut
701
628
-
Gly
TCC
[ENA]
¢þ
>WENV182797400
OJSX01000627
[OJSX] human gut metagenome; human gut
723
796
+
Gly
CCC
[ENA]
¢þ
>WENV182797375
OJSX01000039
[OJSX] human gut metagenome; human gut
777
702
-
Val
TAC
[ENA]
¢þ
>WENV182797403
OJSX01000736
[OJSX] human gut metagenome; human gut
902
976
+
Pro
TGG
[ENA]
¢þ
>WENV182797373
OJSX01000033
[OJSX] human gut metagenome; human gut
976
1047
+
Arg
CCG
[ENA]
¢þ
>WENV182797401
OJSX01000731
[OJSX] human gut metagenome; human gut
1016
1089
+
Ile2
CAT
[ENA]
¢þ
>WENV182797407
OJSX01000798
[OJSX] human gut metagenome; human gut
1044
1120
+
fMet
CAT
[ENA]
¢þ
>WENV182797402
OJSX01000731
[OJSX] human gut metagenome; human gut
1098
1189
+
Ser
TGA
[ENA]
¢þ
>WENV182797358
OJSX01000016
[OJSX] human gut metagenome; human gut
2007
2082
+
Thr
TGT
[ENA]
¢þ
>WENV182797399
OJSX01000241
[OJSX] human gut metagenome; human gut
2620
2547
-
Arg
TCT
[ENA]
¢þ
>WENV182797351
OJSX01000014
[OJSX] human gut metagenome; human gut
5178
5093
-
Leu
GAG
[ENA]
¢þ
>WENV182797397
OJSX01000127
[OJSX] human gut metagenome; human gut
7358
7452
+
SeC
TCA
[ENA]
¢þ
>WENV182797387
OJSX01000081
[OJSX] human gut metagenome; human gut
8077
8151
+
Lys
CTT
[ENA]
¢þ
>WENV182797372
OJSX01000031
[OJSX] human gut metagenome; human gut
9136
9064
-
Asp
GTC
[ENA]
¢þ
>WENV182797371
OJSX01000031
[OJSX] human gut metagenome; human gut
9216
9142
-
Glu
TTC
[ENA]
¢þ
>WENV182797389
OJSX01000092
[OJSX] human gut metagenome; human gut
9981
10054
+
fMet
CAT
[ENA]
¢þ
>WENV182797390
OJSX01000092
[OJSX] human gut metagenome; human gut
10069
10144
+
Asp
GTC
[ENA]
¢þ
>WENV182797391
OJSX01000092
[OJSX] human gut metagenome; human gut
10154
10228
+
Phe
GAA
[ENA]
¢þ
>WENV182797392
OJSX01000092
[OJSX] human gut metagenome; human gut
10241
10316
+
His
GTG
[ENA]
¢þ
>WENV182797393
OJSX01000092
[OJSX] human gut metagenome; human gut
10334
10407
+
Gly
TCC
[ENA]
¢þ
>WENV182797394
OJSX01000092
[OJSX] human gut metagenome; human gut
10417
10491
+
Asn
GTT
[ENA]
¢þ
>WENV182797395
OJSX01000092
[OJSX] human gut metagenome; human gut
10492
10565
+
Glu
TTC
[ENA]
¢þ
>WENV182797396
OJSX01000092
[OJSX] human gut metagenome; human gut
10616
10706
+
Ser
GGA
[ENA]
¢þ
>WENV182797386
OJSX01000051
[OJSX] human gut metagenome; human gut
10858
10932
+
Pro
GGG
[ENA]
¢þ
>WENV182797350
OJSX01000014
[OJSX] human gut metagenome; human gut
12882
12807
-
Asn
GTT
[ENA]
¢þ
>WENV182797349
OJSX01000014
[OJSX] human gut metagenome; human gut
12960
12885
-
Phe
GAA
[ENA]
¢þ
>WENV182797388
OJSX01000081
[OJSX] human gut metagenome; human gut
13013
13096
+
Leu
TAG
[ENA]
¢þ
>WENV182797341
OJSX01000013
[OJSX] human gut metagenome; human gut
13617
13693
+
Pro
CGG
[ENA]
¢þ
>WENV182797383
OJSX01000040
[OJSX] human gut metagenome; human gut
17406
17480
+
Asn
GTT
[ENA]
¢þ
>WENV182797384
OJSX01000040
[OJSX] human gut metagenome; human gut
17483
17573
+
Ser
GCT
[ENA]
¢þ
>WENV182797306
OJSX01000004
[OJSX] human gut metagenome; human gut
19105
19192
+
Leu
GAG
[ENA]
¢þ
>WENV182797369
OJSX01000025
[OJSX] human gut metagenome; human gut
22659
22733
+
Arg
TCT
[ENA]
¢þ
>WENV182797385
OJSX01000049
[OJSX] human gut metagenome; human gut
29430
29355
-
Trp
CCA
[ENA]
¢þ
>WENV182797320
OJSX01000009
[OJSX] human gut metagenome; human gut
31826
31898
+
Arg
CCG
[ENA]
¢þ
>WENV182797363
OJSX01000018
[OJSX] human gut metagenome; human gut
31906
31979
+
Gly
CCC
[ENA]
¢þ
>WENV182797374
OJSX01000037
[OJSX] human gut metagenome; human gut
33975
34067
+
Ser
TGA
[ENA]
¢þ
>WENV182797370
OJSX01000028
[OJSX] human gut metagenome; human gut
38060
37984
-
Ile2
CAT
[ENA]
¢þ
>WENV182797345
OJSX01000013
[OJSX] human gut metagenome; human gut
41538
41451
-
Ser
CGA
[ENA]
¢þ
>WENV182797346
OJSX01000014
[OJSX] human gut metagenome; human gut
44090
44166
+
Pro
TGG
[ENA]
¢þ
>WENV182797347
OJSX01000014
[OJSX] human gut metagenome; human gut
44219
44295
+
Arg
TCT
[ENA]
¢þ
>WENV182797348
OJSX01000014
[OJSX] human gut metagenome; human gut
44545
44456
-
Ser
GGA
[ENA]
¢þ
>WENV182797344
OJSX01000013
[OJSX] human gut metagenome; human gut
49792
49719
-
Arg
ACG
[ENA]
¢þ
>WENV182797343
OJSX01000013
[OJSX] human gut metagenome; human gut
50112
50022
-
Ser
GCT
[ENA]
¢þ
>WENV182797321
OJSX01000009
[OJSX] human gut metagenome; human gut
52882
52958
+
fMet
CAT
[ENA]
¢þ
>WENV182797362
OJSX01000016
[OJSX] human gut metagenome; human gut
53022
52949
-
Arg
CCT
[ENA]
¢þ
>WENV182797304
OJSX01000003
[OJSX] human gut metagenome; human gut
56154
56229
+
Ala
TGC
[ENA]
¢þ
>WENV182797342
OJSX01000013
[OJSX] human gut metagenome; human gut
57443
57358
-
Ser
TGA
[ENA]
¢þ
>WENV182797333
OJSX01000010
[OJSX] human gut metagenome; human gut
58239
58153
-
Leu
TAA
[ENA]
¢þ
>WENV182797332
OJSX01000010
[OJSX] human gut metagenome; human gut
58319
58244
-
Gly
GCC
[ENA]
¢þ
>WENV182797331
OJSX01000010
[OJSX] human gut metagenome; human gut
58414
58339
-
Gly
GCC
[ENA]
¢þ
>WENV182797359
OJSX01000016
[OJSX] human gut metagenome; human gut
60545
60618
+
Ala
CGC
[ENA]
¢þ
>WENV182797368
OJSX01000021
[OJSX] human gut metagenome; human gut
61133
61059
-
Lys
TTT
[ENA]
¢þ
>WENV182797365
OJSX01000021
[OJSX] human gut metagenome; human gut
62946
63020
+
Glu
TTC
[ENA]
¢þ
>WENV182797366
OJSX01000021
[OJSX] human gut metagenome; human gut
63432
63506
+
Asp
GTC
[ENA]
¢þ
>WENV182797367
OJSX01000021
[OJSX] human gut metagenome; human gut
63567
63642
+
Phe
GAA
[ENA]
¢þ
>WENV182797357
OJSX01000015
[OJSX] human gut metagenome; human gut
65102
65027
-
Lys
CTT
[ENA]
¢þ
>WENV182797356
OJSX01000015
[OJSX] human gut metagenome; human gut
65208
65133
-
Lys
TTT
[ENA]
¢þ
>WENV182797355
OJSX01000015
[OJSX] human gut metagenome; human gut
65309
65234
-
Lys
TTT
[ENA]
¢þ
>WENV182797319
OJSX01000008
[OJSX] human gut metagenome; human gut
66678
66593
-
Ser
GGA
[ENA]
¢þ
>WENV182797334
OJSX01000011
[OJSX] human gut metagenome; human gut
69513
69588
+
Asn
GTT
[ENA]
¢þ
>WENV182797295
OJSX01000002
[OJSX] human gut metagenome; human gut
70128
70213
+
Leu
CAA
[ENA]
¢þ
>WENV182797354
OJSX01000015
[OJSX] human gut metagenome; human gut
90516
90427
-
Ser
TGA
[ENA]
¢þ
>WENV182797360
OJSX01000016
[OJSX] human gut metagenome; human gut
96591
96670
+
Gln
TTG
[ENA]
¢þ
>WENV182797364
OJSX01000018
[OJSX] human gut metagenome; human gut
100400
100483
+
Leu
CAG
[ENA]
¢þ
>WENV182797361
OJSX01000016
[OJSX] human gut metagenome; human gut
115827
115901
+
Leu
TAA
[ENA]
¢þ
>WENV182797353
OJSX01000015
[OJSX] human gut metagenome; human gut
118742
118667
-
Ala
GGC
[ENA]
¢þ
>WENV182797318
OJSX01000008
[OJSX] human gut metagenome; human gut
118942
119017
+
Thr
CGT
[ENA]
¢þ
>WENV182797352
OJSX01000015
[OJSX] human gut metagenome; human gut
120438
120513
+
Val
TAC
[ENA]
¢þ
>WENV182797322
OJSX01000009
[OJSX] human gut metagenome; human gut
120805
120879
+
Val
TAC
[ENA]
¢þ
>WENV182797330
OJSX01000010
[OJSX] human gut metagenome; human gut
128040
127964
-
Asp
GTC
[ENA]
¢þ
>WENV182797329
OJSX01000010
[OJSX] human gut metagenome; human gut
128144
128068
-
Asp
GTC
[ENA]
¢þ
>WENV182797324
OJSX01000009
[OJSX] human gut metagenome; human gut
130289
130214
-
Glu
CTC
[ENA]
¢þ
>WENV182797323
OJSX01000009
[OJSX] human gut metagenome; human gut
130497
130425
-
Gln
CTG
[ENA]
¢þ
>WENV182797340
OJSX01000012
[OJSX] human gut metagenome; human gut
133128
133055
-
Trp
CCA
[ENA]
¢þ
>WENV182797339
OJSX01000012
[OJSX] human gut metagenome; human gut
137194
137120
-
Met
CAT
[ENA]
¢þ
>WENV182797338
OJSX01000012
[OJSX] human gut metagenome; human gut
137332
137259
-
Thr
GGT
[ENA]
¢þ
>WENV182797337
OJSX01000012
[OJSX] human gut metagenome; human gut
137615
137533
-
Tyr
GTA
[ENA]
¢þ
>WENV182797328
OJSX01000010
[OJSX] human gut metagenome; human gut
139026
138951
-
Lys
TTT
[ENA]
¢þ
>WENV182797327
OJSX01000010
[OJSX] human gut metagenome; human gut
139131
139045
-
Leu
TAA
[ENA]
¢þ
>WENV182797326
OJSX01000010
[OJSX] human gut metagenome; human gut
139211
139136
-
Gly
GCC
[ENA]
¢þ
>WENV182797303
OJSX01000002
[OJSX] human gut metagenome; human gut
146537
146461
-
fMet
CAT
[ENA]
¢þ
>WENV182797325
OJSX01000010
[OJSX] human gut metagenome; human gut
147580
147504
-
fMet
CAT
[ENA]
¢þ
>WENV182797305
OJSX01000003
[OJSX] human gut metagenome; human gut
185889
185815
-
Ile
GAT
[ENA]
¢þ
>WENV182797310
OJSX01000004
[OJSX] human gut metagenome; human gut
186332
186259
-
Gly
TCC
[ENA]
¢þ
>WENV182797311
OJSX01000007
[OJSX] human gut metagenome; human gut
203334
203427
+
Ser
GCT
[ENA]
¢þ
>WENV182797312
OJSX01000007
[OJSX] human gut metagenome; human gut
203452
203528
+
Arg
ACG
[ENA]
¢þ
>WENV182797313
OJSX01000007
[OJSX] human gut metagenome; human gut
203582
203658
+
Arg
ACG
[ENA]
¢þ
>WENV182797309
OJSX01000004
[OJSX] human gut metagenome; human gut
205452
205377
-
Pro
TGG
[ENA]
¢þ
>WENV182797296
OJSX01000002
[OJSX] human gut metagenome; human gut
211672
211748
+
Val
GAC
[ENA]
¢þ
>WENV182797294
OJSX01000001
[OJSX] human gut metagenome; human gut
237102
237018
-
Leu
CAA
[ENA]
¢þ
>WENV182797308
OJSX01000004
[OJSX] human gut metagenome; human gut
238078
238003
-
Arg
TCT
[ENA]
¢þ
>WENV182797307
OJSX01000004
[OJSX] human gut metagenome; human gut
240145
240220
+
His
GTG
[ENA]
¢þ
>WENV182797287
OJSX01000001
[OJSX] human gut metagenome; human gut
310444
310517
+
Ala
GGC
[ENA]
¢þ
>WENV182797302
OJSX01000002
[OJSX] human gut metagenome; human gut
416742
416668
-
Gln
TTG
[ENA]
¢þ
>WENV182797301
OJSX01000002
[OJSX] human gut metagenome; human gut
416864
416790
-
Gln
TTG
[ENA]
¢þ
>WENV182797300
OJSX01000002
[OJSX] human gut metagenome; human gut
416976
416892
-
Leu
TAG
[ENA]
¢þ
>WENV182797299
OJSX01000002
[OJSX] human gut metagenome; human gut
417058
416982
-
Met
CAT
[ENA]
¢þ
>WENV182797288
OJSX01000001
[OJSX] human gut metagenome; human gut
419452
419525
+
Asn
GTT
[ENA]
¢þ
>WENV182797289
OJSX01000001
[OJSX] human gut metagenome; human gut
431955
432029
+
Ile2
CAT
[ENA]
¢þ
>WENV182797297
OJSX01000002
[OJSX] human gut metagenome; human gut
492344
492419
+
Gly
GCC
[ENA]
¢þ
>WENV182797298
OJSX01000002
[OJSX] human gut metagenome; human gut
492439
492514
+
Gly
GCC
[ENA]
¢þ
>WENV182797293
OJSX01000001
[OJSX] human gut metagenome; human gut
543624
543552
-
Val
GAC
[ENA]
¢þ
>WENV182797292
OJSX01000001
[OJSX] human gut metagenome; human gut
543696
543625
-
Cys
GCA
[ENA]
¢þ
>WENV182797291
OJSX01000001
[OJSX] human gut metagenome; human gut
543797
543724
-
Gly
GCC
[ENA]
¢þ
>WENV182797290
OJSX01000001
[OJSX] human gut metagenome; human gut
544176
544249
+
Val
CAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK