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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OJTL] human gut metagenome; human gut
HIT:
39 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182798595
OJTL01000737
[OJTL] human gut metagenome; human gut
92
165
+
Cys
GCA
[ENA]
¢þ
>WENV182798600
OJTL01001171
[OJTL] human gut metagenome; human gut
98
174
+
Pro
TGG
[ENA]
¢þ
>WENV182798596
OJTL01000737
[OJTL] human gut metagenome; human gut
179
265
+
Leu
TAA
[ENA]
¢þ
>WENV182798585
OJTL01000442
[OJTL] human gut metagenome; human gut
248
173
-
Ile2
CAT
[ENA]
¢þ
>WENV182798604
OJTL01001923
[OJTL] human gut metagenome; human gut
430
357
-
Gly
CCC
[ENA]
¢þ
>WENV182798576
OJTL01000228
[OJTL] human gut metagenome; human gut
682
607
-
Asn
GTT
[ENA]
¢þ
>WENV182798603
OJTL01001637
[OJTL] human gut metagenome; human gut
726
802
+
Pro
GGG
[ENA]
¢þ
>WENV182798602
OJTL01001627
[OJTL] human gut metagenome; human gut
820
736
-
Leu
CAA
[ENA]
¢þ
>WENV182798588
OJTL01000460
[OJTL] human gut metagenome; human gut
867
792
-
Lys
TTT
[ENA]
¢þ
>WENV182798594
OJTL01000662
[OJTL] human gut metagenome; human gut
878
803
-
Glu
TTC
[ENA]
¢þ
>WENV182798587
OJTL01000460
[OJTL] human gut metagenome; human gut
946
871
-
Val
TAC
[ENA]
¢þ
>WENV182798574
OJTL01000201
[OJTL] human gut metagenome; human gut
971
895
-
Pro
CGG
[ENA]
¢þ
>WENV182798599
OJTL01001063
[OJTL] human gut metagenome; human gut
1035
1124
+
Ser
CGA
[ENA]
¢þ
>WENV182798572
OJTL01000163
[OJTL] human gut metagenome; human gut
1073
986
-
Ser
GGA
[ENA]
¢þ
>WENV182798601
OJTL01001455
[OJTL] human gut metagenome; human gut
1087
1162
+
Gly
GCC
[ENA]
¢þ
>WENV182798589
OJTL01000494
[OJTL] human gut metagenome; human gut
1204
1280
+
Val
GAC
[ENA]
¢þ
>WENV182798590
OJTL01000494
[OJTL] human gut metagenome; human gut
1285
1361
+
Val
GAC
[ENA]
¢þ
>WENV182798586
OJTL01000457
[OJTL] human gut metagenome; human gut
1482
1408
-
Gly
TCC
[ENA]
¢þ
>WENV182798598
OJTL01000935
[OJTL] human gut metagenome; human gut
1583
1657
+
Arg
CCT
[ENA]
¢þ
>WENV182798593
OJTL01000527
[OJTL] human gut metagenome; human gut
1598
1522
-
Arg
ACG
[ENA]
¢þ
>WENV182798597
OJTL01000824
[OJTL] human gut metagenome; human gut
1645
1559
-
Leu
GAG
[ENA]
¢þ
>WENV182798592
OJTL01000527
[OJTL] human gut metagenome; human gut
1695
1603
-
Ser
GCT
[ENA]
¢þ
>WENV182798569
OJTL01000077
[OJTL] human gut metagenome; human gut
1908
1832
-
Arg
TCT
[ENA]
¢þ
>WENV182798578
OJTL01000271
[OJTL] human gut metagenome; human gut
1910
1835
-
Trp
CCA
[ENA]
¢þ
>WENV182798577
OJTL01000271
[OJTL] human gut metagenome; human gut
2040
1964
-
Asp
GTC
[ENA]
¢þ
>WENV182798575
OJTL01000228
[OJTL] human gut metagenome; human gut
2439
2514
+
Asn
GTT
[ENA]
¢þ
>WENV182798582
OJTL01000364
[OJTL] human gut metagenome; human gut
2532
2456
-
fMet
CAT
[ENA]
¢þ
>WENV182798566
OJTL01000018
[OJTL] human gut metagenome; human gut
2940
3016
+
Arg
CCG
[ENA]
¢þ
>WENV182798591
OJTL01000523
[OJTL] human gut metagenome; human gut
3054
2980
-
Gln
CTG
[ENA]
¢þ
>WENV182798567
OJTL01000018
[OJTL] human gut metagenome; human gut
3072
3147
+
His
GTG
[ENA]
¢þ
>WENV182798568
OJTL01000018
[OJTL] human gut metagenome; human gut
3171
3257
+
Leu
CAG
[ENA]
¢þ
>WENV182798583
OJTL01000373
[OJTL] human gut metagenome; human gut
3619
3694
+
Thr
TGT
[ENA]
¢þ
>WENV182798584
OJTL01000373
[OJTL] human gut metagenome; human gut
3705
3789
+
Tyr
GTA
[ENA]
¢þ
>WENV182798573
OJTL01000190
[OJTL] human gut metagenome; human gut
3983
4058
+
Phe
GAA
[ENA]
¢þ
>WENV182798579
OJTL01000286
[OJTL] human gut metagenome; human gut
3997
4073
+
Met
CAT
[ENA]
¢þ
>WENV182798580
OJTL01000286
[OJTL] human gut metagenome; human gut
4083
4167
+
Leu
TAG
[ENA]
¢þ
>WENV182798571
OJTL01000163
[OJTL] human gut metagenome; human gut
4154
4067
-
Ser
GGA
[ENA]
¢þ
>WENV182798581
OJTL01000286
[OJTL] human gut metagenome; human gut
4191
4265
+
Gln
TTG
[ENA]
¢þ
>WENV182798570
OJTL01000112
[OJTL] human gut metagenome; human gut
5043
5137
+
SeC
TCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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