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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OJTO] human gut metagenome; human gut
HIT:
76 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182798892
OJTO01002409
[OJTO] human gut metagenome; human gut
67
142
+
Val
TAC
[ENA]
¢þ
>WENV182798882
OJTO01001203
[OJTO] human gut metagenome; human gut
74
1
-
Thr
TGT
[ENA]
¢þ
>WENV182798846
OJTO01000124
[OJTO] human gut metagenome; human gut
94
170
+
Arg
ACG
[ENA]
¢þ
>WENV182798886
OJTO01001831
[OJTO] human gut metagenome; human gut
101
177
+
Asp
GTC
[ENA]
¢þ
>WENV182798866
OJTO01000667
[OJTO] human gut metagenome; human gut
112
187
+
His
GTG
[ENA]
¢þ
>WENV182798855
OJTO01000429
[OJTO] human gut metagenome; human gut
118
24
-
SeC
TCA
[ENA]
¢þ
>WENV182798894
OJTO01002604
[OJTO] human gut metagenome; human gut
121
197
+
Ile
GAT
[ENA]
¢þ
>WENV182798891
OJTO01002319
[OJTO] human gut metagenome; human gut
166
91
-
Lys
TTT
[ENA]
¢þ
>WENV182798851
OJTO01000162
[OJTO] human gut metagenome; human gut
174
100
-
Gln
TTG
[ENA]
¢þ
>WENV182798887
OJTO01001831
[OJTO] human gut metagenome; human gut
186
261
+
Trp
CCA
[ENA]
¢þ
>WENV182798888
OJTO01001862
[OJTO] human gut metagenome; human gut
204
117
-
Ser
GGA
[ENA]
¢þ
>WENV182798867
OJTO01000667
[OJTO] human gut metagenome; human gut
208
294
+
Leu
CAG
[ENA]
¢þ
>WENV182798895
OJTO01002604
[OJTO] human gut metagenome; human gut
240
315
+
Ala
TGC
[ENA]
¢þ
>WENV182798890
OJTO01002261
[OJTO] human gut metagenome; human gut
251
326
+
Asn
GTT
[ENA]
¢þ
>WENV182798889
OJTO01002151
[OJTO] human gut metagenome; human gut
263
189
-
Arg
CCT
[ENA]
¢þ
>WENV182798879
OJTO01001053
[OJTO] human gut metagenome; human gut
265
340
+
Asn
GTT
[ENA]
¢þ
>WENV182798880
OJTO01001089
[OJTO] human gut metagenome; human gut
271
195
-
fMet
CAT
[ENA]
¢þ
>WENV182798850
OJTO01000162
[OJTO] human gut metagenome; human gut
284
200
-
Leu
TAG
[ENA]
¢þ
>WENV182798852
OJTO01000196
[OJTO] human gut metagenome; human gut
359
275
-
Tyr
GTA
[ENA]
¢þ
>WENV182798849
OJTO01000162
[OJTO] human gut metagenome; human gut
369
293
-
Met
CAT
[ENA]
¢þ
>WENV182798883
OJTO01001334
[OJTO] human gut metagenome; human gut
421
334
-
Ser
GGA
[ENA]
¢þ
>WENV182798893
OJTO01002462
[OJTO] human gut metagenome; human gut
517
588
+
Cys
GCA
[ENA]
¢þ
>WENV182798881
OJTO01001168
[OJTO] human gut metagenome; human gut
551
476
-
Thr
CGT
[ENA]
¢þ
>WENV182798877
OJTO01000917
[OJTO] human gut metagenome; human gut
606
679
+
Gly
CCC
[ENA]
¢þ
>WENV182798875
OJTO01000873
[OJTO] human gut metagenome; human gut
1040
1129
+
Ser
CGA
[ENA]
¢þ
>WENV182798868
OJTO01000720
[OJTO] human gut metagenome; human gut
1126
1202
+
Pro
CGG
[ENA]
¢þ
>WENV182798861
OJTO01000535
[OJTO] human gut metagenome; human gut
1154
1230
+
Arg
TCT
[ENA]
¢þ
>WENV182798878
OJTO01000970
[OJTO] human gut metagenome; human gut
1185
1101
-
Tyr
GTA
[ENA]
¢þ
>WENV182798885
OJTO01001562
[OJTO] human gut metagenome; human gut
1203
1129
-
Gln
CTG
[ENA]
¢þ
>WENV182798876
OJTO01000896
[OJTO] human gut metagenome; human gut
1288
1363
+
Gly
GCC
[ENA]
¢þ
>WENV182798847
OJTO01000131
[OJTO] human gut metagenome; human gut
1292
1217
-
Lys
TTT
[ENA]
¢þ
>WENV182798884
OJTO01001562
[OJTO] human gut metagenome; human gut
1312
1238
-
Gln
TTG
[ENA]
¢þ
>WENV182798872
OJTO01000811
[OJTO] human gut metagenome; human gut
1345
1419
+
Arg
CCT
[ENA]
¢þ
>WENV182798871
OJTO01000750
[OJTO] human gut metagenome; human gut
1550
1475
-
Asn
GTT
[ENA]
¢þ
>WENV182798836
OJTO01000076
[OJTO] human gut metagenome; human gut
1556
1643
+
Ser
TGA
[ENA]
¢þ
>WENV182798865
OJTO01000644
[OJTO] human gut metagenome; human gut
1627
1543
-
Leu
CAA
[ENA]
¢þ
>WENV182798837
OJTO01000076
[OJTO] human gut metagenome; human gut
1650
1725
+
Thr
TGT
[ENA]
¢þ
>WENV182798840
OJTO01000079
[OJTO] human gut metagenome; human gut
1790
1696
-
SeC
TCA
[ENA]
¢þ
>WENV182798838
OJTO01000076
[OJTO] human gut metagenome; human gut
1975
2062
+
Ser
TGA
[ENA]
¢þ
>WENV182798820
OJTO01000001
[OJTO] human gut metagenome; human gut
1979
2054
+
Ala
GGC
[ENA]
¢þ
>WENV182798869
OJTO01000743
[OJTO] human gut metagenome; human gut
2042
2118
+
Val
GAC
[ENA]
¢þ
>WENV182798839
OJTO01000076
[OJTO] human gut metagenome; human gut
2069
2144
+
Thr
TGT
[ENA]
¢þ
>WENV182798845
OJTO01000118
[OJTO] human gut metagenome; human gut
2079
2003
-
Pro
TGG
[ENA]
¢þ
>WENV182798821
OJTO01000001
[OJTO] human gut metagenome; human gut
2081
2156
+
Ala
GGC
[ENA]
¢þ
>WENV182798874
OJTO01000859
[OJTO] human gut metagenome; human gut
2115
2031
-
Leu
CAA
[ENA]
¢þ
>WENV182798870
OJTO01000743
[OJTO] human gut metagenome; human gut
2123
2199
+
Val
GAC
[ENA]
¢þ
>WENV182798856
OJTO01000456
[OJTO] human gut metagenome; human gut
2503
2578
+
Ile2
CAT
[ENA]
¢þ
>WENV182798848
OJTO01000151
[OJTO] human gut metagenome; human gut
2549
2474
-
Phe
GAA
[ENA]
¢þ
>WENV182798873
OJTO01000857
[OJTO] human gut metagenome; human gut
2557
2471
-
Leu
TAA
[ENA]
¢þ
>WENV182798857
OJTO01000456
[OJTO] human gut metagenome; human gut
2679
2755
+
Arg
TCT
[ENA]
¢þ
>WENV182798864
OJTO01000596
[OJTO] human gut metagenome; human gut
3314
3390
+
Met
CAT
[ENA]
¢þ
>WENV182798863
OJTO01000578
[OJTO] human gut metagenome; human gut
3334
3259
-
Trp
CCA
[ENA]
¢þ
>WENV182798862
OJTO01000578
[OJTO] human gut metagenome; human gut
3418
3342
-
Asp
GTC
[ENA]
¢þ
>WENV182798853
OJTO01000377
[OJTO] human gut metagenome; human gut
3448
3535
+
Ser
GGA
[ENA]
¢þ
>WENV182798854
OJTO01000413
[OJTO] human gut metagenome; human gut
3594
3518
-
Pro
GGG
[ENA]
¢þ
>WENV182798842
OJTO01000098
[OJTO] human gut metagenome; human gut
3615
3539
-
Pro
GGG
[ENA]
¢þ
>WENV182798860
OJTO01000473
[OJTO] human gut metagenome; human gut
3684
3598
-
Leu
GAG
[ENA]
¢þ
>WENV182798858
OJTO01000470
[OJTO] human gut metagenome; human gut
3770
3845
+
Thr
TGT
[ENA]
¢þ
>WENV182798859
OJTO01000470
[OJTO] human gut metagenome; human gut
3862
3946
+
Tyr
GTA
[ENA]
¢þ
>WENV182798844
OJTO01000107
[OJTO] human gut metagenome; human gut
5381
5294
-
Ser
TGA
[ENA]
¢þ
>WENV182798843
OJTO01000100
[OJTO] human gut metagenome; human gut
9256
9332
+
Ile2
CAT
[ENA]
¢þ
>WENV182798822
OJTO01000004
[OJTO] human gut metagenome; human gut
9413
9338
-
Phe
GAA
[ENA]
¢þ
>WENV182798841
OJTO01000088
[OJTO] human gut metagenome; human gut
15846
15922
+
Asp
GTC
[ENA]
¢þ
>WENV182798825
OJTO01000008
[OJTO] human gut metagenome; human gut
16278
16202
-
fMet
CAT
[ENA]
¢þ
>WENV182798824
OJTO01000008
[OJTO] human gut metagenome; human gut
16428
16339
-
Leu
GAG
[ENA]
¢þ
>WENV182798826
OJTO01000012
[OJTO] human gut metagenome; human gut
17873
17797
-
Arg
TCT
[ENA]
¢þ
>WENV182798832
OJTO01000019
[OJTO] human gut metagenome; human gut
20212
20136
-
Val
GAC
[ENA]
¢þ
>WENV182798831
OJTO01000019
[OJTO] human gut metagenome; human gut
20317
20241
-
Val
GAC
[ENA]
¢þ
>WENV182798835
OJTO01000054
[OJTO] human gut metagenome; human gut
20519
20444
-
Lys
CTT
[ENA]
¢þ
>WENV182798834
OJTO01000039
[OJTO] human gut metagenome; human gut
21853
21926
+
Gly
CCC
[ENA]
¢þ
>WENV182798833
OJTO01000027
[OJTO] human gut metagenome; human gut
21889
21814
-
Gly
GCC
[ENA]
¢þ
>WENV182798827
OJTO01000015
[OJTO] human gut metagenome; human gut
31104
31180
+
Arg
CCG
[ENA]
¢þ
>WENV182798828
OJTO01000015
[OJTO] human gut metagenome; human gut
31244
31319
+
His
GTG
[ENA]
¢þ
>WENV182798829
OJTO01000015
[OJTO] human gut metagenome; human gut
31342
31428
+
Leu
CAG
[ENA]
¢þ
>WENV182798830
OJTO01000015
[OJTO] human gut metagenome; human gut
31456
31532
+
Pro
TGG
[ENA]
¢þ
>WENV182798823
OJTO01000005
[OJTO] human gut metagenome; human gut
42903
42827
-
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK