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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OJTS] human gut metagenome; human gut
HIT:
88 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182799211
OJTS01000012
[OJTS] human gut metagenome; human gut
1
76
+
Ala
GGC
[ENA]
¢þ
>WENV182799258
OJTS01000411
[OJTS] human gut metagenome; human gut
4
89
+
Leu
CAG
[ENA]
¢þ
>WENV182799285
OJTS01001130
[OJTS] human gut metagenome; human gut
80
7
-
Gln
TTG
[ENA]
¢þ
>WENV182799224
OJTS01000097
[OJTS] human gut metagenome; human gut
86
172
+
Leu
CAG
[ENA]
¢þ
>WENV182799272
OJTS01000533
[OJTS] human gut metagenome; human gut
102
177
+
Trp
CCA
[ENA]
¢þ
>WENV182799293
OJTS01001441
[OJTS] human gut metagenome; human gut
107
23
-
Leu
CAG
[ENA]
¢þ
>WENV182799295
OJTS01002274
[OJTS] human gut metagenome; human gut
131
220
+
Ser
GGA
[ENA]
¢þ
>WENV182799270
OJTS01000509
[OJTS] human gut metagenome; human gut
132
58
-
Gly
TCC
[ENA]
¢þ
>WENV182799284
OJTS01001130
[OJTS] human gut metagenome; human gut
170
88
-
Tyr
GTA
[ENA]
¢þ
>WENV182799273
OJTS01000545
[OJTS] human gut metagenome; human gut
198
273
+
Lys
TTT
[ENA]
¢þ
>WENV182799292
OJTS01001441
[OJTS] human gut metagenome; human gut
210
124
-
Leu
GAG
[ENA]
¢þ
>WENV182799283
OJTS01001130
[OJTS] human gut metagenome; human gut
247
175
-
Phe
GAA
[ENA]
¢þ
>WENV182799238
OJTS01000186
[OJTS] human gut metagenome; human gut
283
359
+
Arg
ACG
[ENA]
¢þ
>WENV182799291
OJTS01001441
[OJTS] human gut metagenome; human gut
300
225
-
Phe
GAA
[ENA]
¢þ
>WENV182799269
OJTS01000509
[OJTS] human gut metagenome; human gut
332
248
-
Tyr
GTA
[ENA]
¢þ
>WENV182799282
OJTS01001130
[OJTS] human gut metagenome; human gut
368
293
-
Asp
GTC
[ENA]
¢þ
>WENV182799290
OJTS01001441
[OJTS] human gut metagenome; human gut
389
314
-
Asp
GTC
[ENA]
¢þ
>WENV182799286
OJTS01001307
[OJTS] human gut metagenome; human gut
403
312
-
Ser
GCT
[ENA]
¢þ
>WENV182799268
OJTS01000509
[OJTS] human gut metagenome; human gut
418
343
-
Thr
TGT
[ENA]
¢þ
>WENV182799294
OJTS01001853
[OJTS] human gut metagenome; human gut
424
341
-
Leu
TAG
[ENA]
¢þ
>WENV182799281
OJTS01001130
[OJTS] human gut metagenome; human gut
452
378
-
Val
TAC
[ENA]
¢þ
>WENV182799287
OJTS01001355
[OJTS] human gut metagenome; human gut
496
572
+
Ile2
CAT
[ENA]
¢þ
>WENV182799288
OJTS01001355
[OJTS] human gut metagenome; human gut
578
653
+
Ala
TGC
[ENA]
¢þ
>WENV182799289
OJTS01001355
[OJTS] human gut metagenome; human gut
659
735
+
Ile
GAT
[ENA]
¢þ
>WENV182799256
OJTS01000385
[OJTS] human gut metagenome; human gut
857
932
+
Ile2
CAT
[ENA]
¢þ
>WENV182799279
OJTS01000758
[OJTS] human gut metagenome; human gut
1151
1226
+
Trp
CCA
[ENA]
¢þ
>WENV182799280
OJTS01000758
[OJTS] human gut metagenome; human gut
1234
1310
+
Arg
ACG
[ENA]
¢þ
>WENV182799278
OJTS01000631
[OJTS] human gut metagenome; human gut
1524
1449
-
Thr
CGT
[ENA]
¢þ
>WENV182799276
OJTS01000584
[OJTS] human gut metagenome; human gut
1681
1592
-
Ser
CGA
[ENA]
¢þ
>WENV182799275
OJTS01000563
[OJTS] human gut metagenome; human gut
1898
1823
-
Ala
TGC
[ENA]
¢þ
>WENV182799260
OJTS01000435
[OJTS] human gut metagenome; human gut
2006
2093
+
Ser
TGA
[ENA]
¢þ
>WENV182799274
OJTS01000563
[OJTS] human gut metagenome; human gut
2086
2010
-
Ile
GAT
[ENA]
¢þ
>WENV182799248
OJTS01000357
[OJTS] human gut metagenome; human gut
2199
2274
+
Lys
TTT
[ENA]
¢þ
>WENV182799277
OJTS01000610
[OJTS] human gut metagenome; human gut
2344
2428
+
Tyr
GTA
[ENA]
¢þ
>WENV182799249
OJTS01000357
[OJTS] human gut metagenome; human gut
2401
2476
+
Val
TAC
[ENA]
¢þ
>WENV182799245
OJTS01000292
[OJTS] human gut metagenome; human gut
2447
2371
-
Asp
GTC
[ENA]
¢þ
>WENV182799250
OJTS01000357
[OJTS] human gut metagenome; human gut
2480
2555
+
Lys
TTT
[ENA]
¢þ
>WENV182799239
OJTS01000189
[OJTS] human gut metagenome; human gut
2515
2590
+
Ile2
CAT
[ENA]
¢þ
>WENV182799251
OJTS01000357
[OJTS] human gut metagenome; human gut
2697
2772
+
Lys
TTT
[ENA]
¢þ
>WENV182799244
OJTS01000280
[OJTS] human gut metagenome; human gut
2712
2636
-
Asp
GTC
[ENA]
¢þ
>WENV182799259
OJTS01000428
[OJTS] human gut metagenome; human gut
2740
2667
-
Gly
CCC
[ENA]
¢þ
>WENV182799263
OJTS01000463
[OJTS] human gut metagenome; human gut
2746
2821
+
Val
TAC
[ENA]
¢þ
>WENV182799253
OJTS01000361
[OJTS] human gut metagenome; human gut
2754
2829
+
Val
TAC
[ENA]
¢þ
>WENV182799252
OJTS01000357
[OJTS] human gut metagenome; human gut
2804
2879
+
Lys
TTT
[ENA]
¢þ
>WENV182799264
OJTS01000463
[OJTS] human gut metagenome; human gut
2863
2938
+
Val
TAC
[ENA]
¢þ
>WENV182799254
OJTS01000361
[OJTS] human gut metagenome; human gut
2875
2950
+
Val
TAC
[ENA]
¢þ
>WENV182799255
OJTS01000361
[OJTS] human gut metagenome; human gut
2955
3030
+
Lys
TTT
[ENA]
¢þ
>WENV182799265
OJTS01000463
[OJTS] human gut metagenome; human gut
2968
3043
+
Val
TAC
[ENA]
¢þ
>WENV182799266
OJTS01000463
[OJTS] human gut metagenome; human gut
3048
3123
+
Lys
TTT
[ENA]
¢þ
>WENV182799216
OJTS01000038
[OJTS] human gut metagenome; human gut
3200
3276
+
Pro
GGG
[ENA]
¢þ
>WENV182799271
OJTS01000532
[OJTS] human gut metagenome; human gut
3415
3340
-
Trp
CCA
[ENA]
¢þ
>WENV182799267
OJTS01000483
[OJTS] human gut metagenome; human gut
4358
4283
-
Thr
GGT
[ENA]
¢þ
>WENV182799262
OJTS01000457
[OJTS] human gut metagenome; human gut
4719
4803
+
Tyr
GTA
[ENA]
¢þ
>WENV182799257
OJTS01000395
[OJTS] human gut metagenome; human gut
4876
4800
-
fMet
CAT
[ENA]
¢þ
>WENV182799222
OJTS01000073
[OJTS] human gut metagenome; human gut
4896
4820
-
Arg
TCT
[ENA]
¢þ
>WENV182799261
OJTS01000440
[OJTS] human gut metagenome; human gut
5331
5423
+
Ser
GCT
[ENA]
¢þ
>WENV182799227
OJTS01000102
[OJTS] human gut metagenome; human gut
6052
6136
+
Leu
CAA
[ENA]
¢þ
>WENV182799246
OJTS01000297
[OJTS] human gut metagenome; human gut
6137
6062
-
Asn
GTT
[ENA]
¢þ
>WENV182799242
OJTS01000248
[OJTS] human gut metagenome; human gut
6379
6455
+
Pro
TGG
[ENA]
¢þ
>WENV182799221
OJTS01000064
[OJTS] human gut metagenome; human gut
8422
8347
-
Phe
GAA
[ENA]
¢þ
>WENV182799231
OJTS01000139
[OJTS] human gut metagenome; human gut
8915
8991
+
Val
GAC
[ENA]
¢þ
>WENV182799232
OJTS01000139
[OJTS] human gut metagenome; human gut
8996
9072
+
Val
GAC
[ENA]
¢þ
>WENV182799220
OJTS01000059
[OJTS] human gut metagenome; human gut
10759
10684
-
Phe
GAA
[ENA]
¢þ
>WENV182799247
OJTS01000300
[OJTS] human gut metagenome; human gut
10877
10952
+
Lys
TTT
[ENA]
¢þ
>WENV182799241
OJTS01000241
[OJTS] human gut metagenome; human gut
11747
11834
+
Ser
GGA
[ENA]
¢þ
>WENV182799243
OJTS01000280
[OJTS] human gut metagenome; human gut
12165
12089
-
Asp
GTC
[ENA]
¢þ
>WENV182799237
OJTS01000165
[OJTS] human gut metagenome; human gut
12185
12113
-
Arg
CCT
[ENA]
¢þ
>WENV182799217
OJTS01000045
[OJTS] human gut metagenome; human gut
12743
12816
+
Gly
CCC
[ENA]
¢þ
>WENV182799240
OJTS01000190
[OJTS] human gut metagenome; human gut
18644
18720
+
Met
CAT
[ENA]
¢þ
>WENV182799235
OJTS01000141
[OJTS] human gut metagenome; human gut
18908
18833
-
Asn
GTT
[ENA]
¢þ
>WENV182799212
OJTS01000012
[OJTS] human gut metagenome; human gut
20473
20399
-
Arg
CCT
[ENA]
¢þ
>WENV182799234
OJTS01000141
[OJTS] human gut metagenome; human gut
20666
20741
+
Asn
GTT
[ENA]
¢þ
>WENV182799233
OJTS01000140
[OJTS] human gut metagenome; human gut
21678
21754
+
Arg
TCT
[ENA]
¢þ
>WENV182799236
OJTS01000154
[OJTS] human gut metagenome; human gut
21968
22044
+
Pro
CGG
[ENA]
¢þ
>WENV182799210
OJTS01000005
[OJTS] human gut metagenome; human gut
23176
23089
-
Ser
TGA
[ENA]
¢þ
>WENV182799213
OJTS01000014
[OJTS] human gut metagenome; human gut
23178
23272
+
SeC
TCA
[ENA]
¢þ
>WENV182799228
OJTS01000104
[OJTS] human gut metagenome; human gut
26871
26947
+
Val
GAC
[ENA]
¢þ
>WENV182799229
OJTS01000104
[OJTS] human gut metagenome; human gut
26952
27028
+
Val
GAC
[ENA]
¢þ
>WENV182799230
OJTS01000104
[OJTS] human gut metagenome; human gut
27033
27109
+
Val
GAC
[ENA]
¢þ
>WENV182799223
OJTS01000096
[OJTS] human gut metagenome; human gut
27237
27310
+
Thr
CGT
[ENA]
¢þ
>WENV182799226
OJTS01000099
[OJTS] human gut metagenome; human gut
29922
29847
-
Gly
GCC
[ENA]
¢þ
>WENV182799209
OJTS01000005
[OJTS] human gut metagenome; human gut
29988
29901
-
Ser
TGA
[ENA]
¢þ
>WENV182799218
OJTS01000058
[OJTS] human gut metagenome; human gut
30044
30120
+
Pro
GGG
[ENA]
¢þ
>WENV182799225
OJTS01000098
[OJTS] human gut metagenome; human gut
30153
30078
-
Thr
GGT
[ENA]
¢þ
>WENV182799219
OJTS01000059
[OJTS] human gut metagenome; human gut
39816
39891
+
Gly
GCC
[ENA]
¢þ
>WENV182799215
OJTS01000027
[OJTS] human gut metagenome; human gut
56747
56673
-
Gln
CTG
[ENA]
¢þ
>WENV182799214
OJTS01000024
[OJTS] human gut metagenome; human gut
59107
59013
-
SeC
TCA
[ENA]
¢þ
>WENV182799208
OJTS01000001
[OJTS] human gut metagenome; human gut
97152
97236
+
Leu
CAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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