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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OJTX] human gut metagenome; human gut
HIT:
27 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182799879
OJTX01000451
[OJTX] human gut metagenome; human gut
6
82
+
Val
GAC
[ENA]
¢þ
>WENV182799881
OJTX01000614
[OJTX] human gut metagenome; human gut
76
152
+
Ile
GAT
[ENA]
¢þ
>WENV182799875
OJTX01000291
[OJTX] human gut metagenome; human gut
136
49
-
Ser
TGA
[ENA]
¢þ
>WENV182799882
OJTX01000614
[OJTX] human gut metagenome; human gut
195
270
+
Ala
TGC
[ENA]
¢þ
>WENV182799878
OJTX01000373
[OJTX] human gut metagenome; human gut
268
193
-
Lys
TTT
[ENA]
¢þ
>WENV182799877
OJTX01000373
[OJTX] human gut metagenome; human gut
348
273
-
Val
TAC
[ENA]
¢þ
>WENV182799885
OJTX01000976
[OJTX] human gut metagenome; human gut
375
303
-
Arg
CCT
[ENA]
¢þ
>WENV182799892
OJTX01001908
[OJTX] human gut metagenome; human gut
379
292
-
Ser
GGA
[ENA]
¢þ
>WENV182799889
OJTX01001157
[OJTX] human gut metagenome; human gut
695
620
-
Asn
GTT
[ENA]
¢þ
>WENV182799891
OJTX01001823
[OJTX] human gut metagenome; human gut
776
852
+
Pro
GGG
[ENA]
¢þ
>WENV182799886
OJTX01001091
[OJTX] human gut metagenome; human gut
856
932
+
Arg
CCG
[ENA]
¢þ
>WENV182799883
OJTX01000653
[OJTX] human gut metagenome; human gut
874
958
+
Tyr
GTA
[ENA]
¢þ
>WENV182799887
OJTX01001091
[OJTX] human gut metagenome; human gut
1000
1075
+
His
GTG
[ENA]
¢þ
>WENV182799890
OJTX01001413
[OJTX] human gut metagenome; human gut
1008
1094
+
Leu
CAG
[ENA]
¢þ
>WENV182799888
OJTX01001091
[OJTX] human gut metagenome; human gut
1097
1182
+
Leu
CAG
[ENA]
¢þ
>WENV182799884
OJTX01000680
[OJTX] human gut metagenome; human gut
1451
1527
+
Arg
TCT
[ENA]
¢þ
>WENV182799869
OJTX01000069
[OJTX] human gut metagenome; human gut
1976
2052
+
Ile
GAT
[ENA]
¢þ
>WENV182799870
OJTX01000069
[OJTX] human gut metagenome; human gut
2183
2258
+
Ala
TGC
[ENA]
¢þ
>WENV182799880
OJTX01000600
[OJTX] human gut metagenome; human gut
2271
2346
+
Thr
TGT
[ENA]
¢þ
>WENV182799874
OJTX01000214
[OJTX] human gut metagenome; human gut
2297
2373
+
fMet
CAT
[ENA]
¢þ
>WENV182799871
OJTX01000104
[OJTX] human gut metagenome; human gut
2359
2434
+
Gly
GCC
[ENA]
¢þ
>WENV182799876
OJTX01000373
[OJTX] human gut metagenome; human gut
3041
3116
+
Ala
GGC
[ENA]
¢þ
>WENV182799873
OJTX01000207
[OJTX] human gut metagenome; human gut
3797
3710
-
Ser
TGA
[ENA]
¢þ
>WENV182799872
OJTX01000188
[OJTX] human gut metagenome; human gut
4133
4227
+
SeC
TCA
[ENA]
¢þ
>WENV182799866
OJTX01000010
[OJTX] human gut metagenome; human gut
5782
5874
+
Ser
GCT
[ENA]
¢þ
>WENV182799867
OJTX01000010
[OJTX] human gut metagenome; human gut
5879
5955
+
Arg
ACG
[ENA]
¢þ
>WENV182799868
OJTX01000060
[OJTX] human gut metagenome; human gut
6102
6177
+
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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