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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OJUM] human gut metagenome; human gut
HIT:
81 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182803594
OJUM01001095
[OJUM] human gut metagenome; human gut
35
109
+
Thr
TGT
[ENA]
¢þ
>WENV182803640
OJUM01001898
[OJUM] human gut metagenome; human gut
57
133
+
Arg
TCT
[ENA]
¢þ
>WENV182803644
OJUM01003306
[OJUM] human gut metagenome; human gut
59
134
+
Asn
GTT
[ENA]
¢þ
>WENV182803631
OJUM01001745
[OJUM] human gut metagenome; human gut
71
1
-
Cys
GCA
[ENA]
¢þ
>WENV182803582
OJUM01000337
[OJUM] human gut metagenome; human gut
113
21
-
Ser
GCT
[ENA]
¢þ
>WENV182803616
OJUM01001353
[OJUM] human gut metagenome; human gut
117
193
+
Arg
ACG
[ENA]
¢þ
>WENV182803595
OJUM01001095
[OJUM] human gut metagenome; human gut
142
213
+
Gly
GCC
[ENA]
¢þ
>WENV182803623
OJUM01001536
[OJUM] human gut metagenome; human gut
165
89
-
fMet
CAT
[ENA]
¢þ
>WENV182803651
OJUM01004417
[OJUM] human gut metagenome; human gut
167
92
-
Ile2
CAT
[ENA]
¢þ
>WENV182803630
OJUM01001745
[OJUM] human gut metagenome; human gut
169
96
-
Gln
TTG
[ENA]
¢þ
>WENV182803643
OJUM01003001
[OJUM] human gut metagenome; human gut
175
264
+
Ser
CGA
[ENA]
¢þ
>WENV182803645
OJUM01003306
[OJUM] human gut metagenome; human gut
176
266
+
Ser
GGA
[ENA]
¢þ
>WENV182803590
OJUM01000866
[OJUM] human gut metagenome; human gut
202
126
-
Pro
CGG
[ENA]
¢þ
>WENV182803621
OJUM01001490
[OJUM] human gut metagenome; human gut
204
130
-
Arg
CCT
[ENA]
¢þ
>WENV182803596
OJUM01001095
[OJUM] human gut metagenome; human gut
222
306
+
Leu
TAA
[ENA]
¢þ
>WENV182803650
OJUM01003865
[OJUM] human gut metagenome; human gut
252
176
-
Val
GAC
[ENA]
¢þ
>WENV182803629
OJUM01001745
[OJUM] human gut metagenome; human gut
255
182
-
His
GTG
[ENA]
¢þ
>WENV182803646
OJUM01003306
[OJUM] human gut metagenome; human gut
282
355
+
Glu
TTC
[ENA]
¢þ
>WENV182803622
OJUM01001508
[OJUM] human gut metagenome; human gut
290
366
+
Pro
GGG
[ENA]
¢þ
>WENV182803597
OJUM01001095
[OJUM] human gut metagenome; human gut
318
391
+
Arg
ACG
[ENA]
¢þ
>WENV182803628
OJUM01001745
[OJUM] human gut metagenome; human gut
365
292
-
Trp
CCA
[ENA]
¢þ
>WENV182803647
OJUM01003306
[OJUM] human gut metagenome; human gut
367
456
+
Ser
TGA
[ENA]
¢þ
>WENV182803598
OJUM01001095
[OJUM] human gut metagenome; human gut
398
473
+
Pro
TGG
[ENA]
¢þ
>WENV182803574
OJUM01000108
[OJUM] human gut metagenome; human gut
415
328
-
Ser
GGA
[ENA]
¢þ
>WENV182803615
OJUM01001318
[OJUM] human gut metagenome; human gut
417
344
-
Pro
TGG
[ENA]
¢þ
>WENV182803627
OJUM01001745
[OJUM] human gut metagenome; human gut
451
369
-
Tyr
GTA
[ENA]
¢þ
>WENV182803648
OJUM01003306
[OJUM] human gut metagenome; human gut
466
541
+
fMet
CAT
[ENA]
¢þ
>WENV182803599
OJUM01001095
[OJUM] human gut metagenome; human gut
487
562
+
Met
CAT
[ENA]
¢þ
>WENV182803632
OJUM01001893
[OJUM] human gut metagenome; human gut
492
567
+
Lys
CTT
[ENA]
¢þ
>WENV182803614
OJUM01001318
[OJUM] human gut metagenome; human gut
502
429
-
Arg
ACG
[ENA]
¢þ
>WENV182803626
OJUM01001745
[OJUM] human gut metagenome; human gut
528
456
-
Phe
GAA
[ENA]
¢þ
>WENV182803649
OJUM01003306
[OJUM] human gut metagenome; human gut
543
615
+
Phe
GAA
[ENA]
¢þ
>WENV182803633
OJUM01001893
[OJUM] human gut metagenome; human gut
575
650
+
His
GTG
[ENA]
¢þ
>WENV182803600
OJUM01001095
[OJUM] human gut metagenome; human gut
581
656
+
Ile2
CAT
[ENA]
¢þ
>WENV182803613
OJUM01001318
[OJUM] human gut metagenome; human gut
602
517
-
Leu
TAA
[ENA]
¢þ
>WENV182803625
OJUM01001745
[OJUM] human gut metagenome; human gut
649
574
-
Asp
GTC
[ENA]
¢þ
>WENV182803634
OJUM01001893
[OJUM] human gut metagenome; human gut
656
730
+
Gln
TTG
[ENA]
¢þ
>WENV182803589
OJUM01000831
[OJUM] human gut metagenome; human gut
675
600
-
Ile2
CAT
[ENA]
¢þ
>WENV182803612
OJUM01001318
[OJUM] human gut metagenome; human gut
689
618
-
Gly
GCC
[ENA]
¢þ
>WENV182803601
OJUM01001095
[OJUM] human gut metagenome; human gut
689
778
+
Ser
TGA
[ENA]
¢þ
>WENV182803624
OJUM01001745
[OJUM] human gut metagenome; human gut
733
659
-
Val
TAC
[ENA]
¢þ
>WENV182803635
OJUM01001893
[OJUM] human gut metagenome; human gut
734
809
+
Lys
TTT
[ENA]
¢þ
>WENV182803586
OJUM01000548
[OJUM] human gut metagenome; human gut
742
669
-
Gly
CCC
[ENA]
¢þ
>WENV182803611
OJUM01001318
[OJUM] human gut metagenome; human gut
769
694
-
Thr
TGT
[ENA]
¢þ
>WENV182803642
OJUM01002682
[OJUM] human gut metagenome; human gut
801
726
-
Trp
CCA
[ENA]
¢þ
>WENV182803602
OJUM01001095
[OJUM] human gut metagenome; human gut
811
886
+
fMet
CAT
[ENA]
¢þ
>WENV182803636
OJUM01001893
[OJUM] human gut metagenome; human gut
814
897
+
Leu
TAG
[ENA]
¢þ
>WENV182803620
OJUM01001383
[OJUM] human gut metagenome; human gut
834
750
-
Tyr
GTA
[ENA]
¢þ
>WENV182803610
OJUM01001318
[OJUM] human gut metagenome; human gut
858
775
-
Leu
TAG
[ENA]
¢þ
>WENV182803573
OJUM01000060
[OJUM] human gut metagenome; human gut
862
937
+
Glu
TTC
[ENA]
¢þ
>WENV182803592
OJUM01001014
[OJUM] human gut metagenome; human gut
892
817
-
Lys
TTT
[ENA]
¢þ
>WENV182803637
OJUM01001893
[OJUM] human gut metagenome; human gut
901
975
+
Gly
GCC
[ENA]
¢þ
>WENV182803619
OJUM01001383
[OJUM] human gut metagenome; human gut
918
843
-
Thr
TGT
[ENA]
¢þ
>WENV182803603
OJUM01001095
[OJUM] human gut metagenome; human gut
933
1008
+
Asp
GTC
[ENA]
¢þ
>WENV182803609
OJUM01001318
[OJUM] human gut metagenome; human gut
939
867
-
Lys
TTT
[ENA]
¢þ
>WENV182803641
OJUM01002188
[OJUM] human gut metagenome; human gut
962
1038
+
Asp
GTC
[ENA]
¢þ
>WENV182803591
OJUM01001014
[OJUM] human gut metagenome; human gut
972
897
-
Val
TAC
[ENA]
¢þ
>WENV182803638
OJUM01001893
[OJUM] human gut metagenome; human gut
982
1055
+
Gly
TCC
[ENA]
¢þ
>WENV182803604
OJUM01001095
[OJUM] human gut metagenome; human gut
1012
1089
+
Phe
GAA
[ENA]
¢þ
>WENV182803608
OJUM01001318
[OJUM] human gut metagenome; human gut
1014
942
-
Asp
GTC
[ENA]
¢þ
>WENV182803584
OJUM01000435
[OJUM] human gut metagenome; human gut
1036
1130
+
SeC
TCA
[ENA]
¢þ
>WENV182803639
OJUM01001893
[OJUM] human gut metagenome; human gut
1066
1142
+
Arg
TCT
[ENA]
¢þ
>WENV182803607
OJUM01001318
[OJUM] human gut metagenome; human gut
1089
1017
-
Val
TAC
[ENA]
¢þ
>WENV182803605
OJUM01001095
[OJUM] human gut metagenome; human gut
1100
1170
+
Gly
TCC
[ENA]
¢þ
>WENV182803580
OJUM01000250
[OJUM] human gut metagenome; human gut
1105
1029
-
Arg
TCT
[ENA]
¢þ
>WENV182803606
OJUM01001284
[OJUM] human gut metagenome; human gut
1110
1036
-
Ala
TGC
[ENA]
¢þ
>WENV182803581
OJUM01000313
[OJUM] human gut metagenome; human gut
1131
1206
+
Gly
GCC
[ENA]
¢þ
>WENV182803617
OJUM01001369
[OJUM] human gut metagenome; human gut
1282
1358
+
Arg
CCG
[ENA]
¢þ
>WENV182803578
OJUM01000227
[OJUM] human gut metagenome; human gut
1397
1473
+
Met
CAT
[ENA]
¢þ
>WENV182803618
OJUM01001369
[OJUM] human gut metagenome; human gut
1417
1492
+
His
GTG
[ENA]
¢þ
>WENV182803593
OJUM01001062
[OJUM] human gut metagenome; human gut
1430
1503
+
Arg
CCG
[ENA]
¢þ
>WENV182803579
OJUM01000227
[OJUM] human gut metagenome; human gut
1522
1596
+
Gln
CTG
[ENA]
¢þ
>WENV182803583
OJUM01000413
[OJUM] human gut metagenome; human gut
1582
1498
-
Leu
CAA
[ENA]
¢þ
>WENV182803571
OJUM01000031
[OJUM] human gut metagenome; human gut
1737
1651
-
Leu
CAG
[ENA]
¢þ
>WENV182803588
OJUM01000633
[OJUM] human gut metagenome; human gut
2060
1989
-
Trp
CCA
[ENA]
¢þ
>WENV182803587
OJUM01000577
[OJUM] human gut metagenome; human gut
2065
2138
+
Lys
CTT
[ENA]
¢þ
>WENV182803585
OJUM01000527
[OJUM] human gut metagenome; human gut
2445
2370
-
Ala
GGC
[ENA]
¢þ
>WENV182803577
OJUM01000169
[OJUM] human gut metagenome; human gut
2793
2718
-
Thr
GGT
[ENA]
¢þ
>WENV182803572
OJUM01000054
[OJUM] human gut metagenome; human gut
3376
3301
-
Phe
GAA
[ENA]
¢þ
>WENV182803576
OJUM01000153
[OJUM] human gut metagenome; human gut
4117
4042
-
Asn
GTT
[ENA]
¢þ
>WENV182803575
OJUM01000153
[OJUM] human gut metagenome; human gut
5109
5198
+
Ser
CGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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