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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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|
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HOW TO USE
tRNA gene List
[OJUZ] human gut metagenome; human gut
HIT:
30 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182804970
OJUZ01000202
[OJUZ] human gut metagenome; human gut
55
128
+
Glu
TTC
[ENA]
¢þ
>WENV182804967
OJUZ01000128
[OJUZ] human gut metagenome; human gut
61
134
+
Cys
GCA
[ENA]
¢þ
>WENV182804976
OJUZ01000476
[OJUZ] human gut metagenome; human gut
169
87
-
Tyr
GTA
[ENA]
¢þ
>WENV182804979
OJUZ01000755
[OJUZ] human gut metagenome; human gut
174
247
+
Glu
CTC
[ENA]
¢þ
>WENV182804971
OJUZ01000202
[OJUZ] human gut metagenome; human gut
179
269
+
Ser
GGA
[ENA]
¢þ
>WENV182804968
OJUZ01000128
[OJUZ] human gut metagenome; human gut
259
342
+
Leu
CAA
[ENA]
¢þ
>WENV182804982
OJUZ01000958
[OJUZ] human gut metagenome; human gut
313
240
-
Phe
GAA
[ENA]
¢þ
>WENV182804983
OJUZ01001009
[OJUZ] human gut metagenome; human gut
357
281
-
fMet
CAT
[ENA]
¢þ
>WENV182804981
OJUZ01000958
[OJUZ] human gut metagenome; human gut
406
332
-
Asp
GTC
[ENA]
¢þ
>WENV182804972
OJUZ01000215
[OJUZ] human gut metagenome; human gut
412
485
+
Arg
ACG
[ENA]
¢þ
>WENV182804980
OJUZ01000958
[OJUZ] human gut metagenome; human gut
517
442
-
Glu
TTC
[ENA]
¢þ
>WENV182804977
OJUZ01000520
[OJUZ] human gut metagenome; human gut
575
661
+
Leu
GAG
[ENA]
¢þ
>WENV182804978
OJUZ01000520
[OJUZ] human gut metagenome; human gut
683
756
+
Gly
TCC
[ENA]
¢þ
>WENV182804975
OJUZ01000295
[OJUZ] human gut metagenome; human gut
729
802
+
Ala
GGC
[ENA]
¢þ
>WENV182804974
OJUZ01000246
[OJUZ] human gut metagenome; human gut
1448
1362
-
Leu
GAG
[ENA]
¢þ
>WENV182804973
OJUZ01000215
[OJUZ] human gut metagenome; human gut
2060
1985
-
His
GTG
[ENA]
¢þ
>WENV182804965
OJUZ01000015
[OJUZ] human gut metagenome; human gut
2596
2667
+
Arg
CCG
[ENA]
¢þ
>WENV182804969
OJUZ01000136
[OJUZ] human gut metagenome; human gut
5103
5031
-
Asp
GTC
[ENA]
¢þ
>WENV182804966
OJUZ01000036
[OJUZ] human gut metagenome; human gut
10705
10797
+
Ser
TGA
[ENA]
¢þ
>WENV182804956
OJUZ01000007
[OJUZ] human gut metagenome; human gut
22521
22595
+
Arg
TCT
[ENA]
¢þ
>WENV182804954
OJUZ01000001
[OJUZ] human gut metagenome; human gut
40913
40987
+
Asn
GTT
[ENA]
¢þ
>WENV182804955
OJUZ01000001
[OJUZ] human gut metagenome; human gut
40990
41080
+
Ser
GCT
[ENA]
¢þ
>WENV182804957
OJUZ01000009
[OJUZ] human gut metagenome; human gut
42153
42228
+
Val
TAC
[ENA]
¢þ
>WENV182804958
OJUZ01000009
[OJUZ] human gut metagenome; human gut
42235
42310
+
Thr
TGT
[ENA]
¢þ
>WENV182804959
OJUZ01000009
[OJUZ] human gut metagenome; human gut
42316
42390
+
Lys
TTT
[ENA]
¢þ
>WENV182804960
OJUZ01000009
[OJUZ] human gut metagenome; human gut
42408
42482
+
Gly
GCC
[ENA]
¢þ
>WENV182804961
OJUZ01000009
[OJUZ] human gut metagenome; human gut
42494
42582
+
Leu
TAA
[ENA]
¢þ
>WENV182804962
OJUZ01000009
[OJUZ] human gut metagenome; human gut
42595
42671
+
Arg
ACG
[ENA]
¢þ
>WENV182804963
OJUZ01000009
[OJUZ] human gut metagenome; human gut
42698
42772
+
Pro
TGG
[ENA]
¢þ
>WENV182804964
OJUZ01000009
[OJUZ] human gut metagenome; human gut
42786
42861
+
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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