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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[OJVJ] human gut metagenome; human gut
HIT:
117 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182805904
OJVJ01000951
[OJVJ] human gut metagenome; human gut
19
94
+
Phe
GAA
[ENA]
¢þ
>WENV182805902
OJVJ01000498
[OJVJ] human gut metagenome; human gut
55
128
+
Ile2
CAT
[ENA]
¢þ
>WENV182805898
OJVJ01000132
[OJVJ] human gut metagenome; human gut
142
69
-
Pro
TGG
[ENA]
¢þ
>WENV182805808
OJVJ01000005
[OJVJ] human gut metagenome; human gut
193
117
-
Arg
ACG
[ENA]
¢þ
>WENV182805897
OJVJ01000132
[OJVJ] human gut metagenome; human gut
227
154
-
Arg
ACG
[ENA]
¢þ
>WENV182805807
OJVJ01000005
[OJVJ] human gut metagenome; human gut
289
197
-
Ser
GCT
[ENA]
¢þ
>WENV182805896
OJVJ01000132
[OJVJ] human gut metagenome; human gut
327
242
-
Leu
TAA
[ENA]
¢þ
>WENV182805895
OJVJ01000132
[OJVJ] human gut metagenome; human gut
414
343
-
Gly
GCC
[ENA]
¢þ
>WENV182805894
OJVJ01000132
[OJVJ] human gut metagenome; human gut
494
419
-
Thr
TGT
[ENA]
¢þ
>WENV182805893
OJVJ01000132
[OJVJ] human gut metagenome; human gut
583
500
-
Leu
TAG
[ENA]
¢þ
>WENV182805892
OJVJ01000132
[OJVJ] human gut metagenome; human gut
672
598
-
Lys
TTT
[ENA]
¢þ
>WENV182805891
OJVJ01000132
[OJVJ] human gut metagenome; human gut
751
677
-
Val
TAC
[ENA]
¢þ
>WENV182805903
OJVJ01000630
[OJVJ] human gut metagenome; human gut
868
795
-
Ile
GAT
[ENA]
¢þ
>WENV182805901
OJVJ01000158
[OJVJ] human gut metagenome; human gut
1475
1551
+
Arg
TCT
[ENA]
¢þ
>WENV182805876
OJVJ01000062
[OJVJ] human gut metagenome; human gut
2044
1969
-
Pro
TGG
[ENA]
¢þ
>WENV182805875
OJVJ01000062
[OJVJ] human gut metagenome; human gut
2155
2080
-
Pro
TGG
[ENA]
¢þ
>WENV182805900
OJVJ01000142
[OJVJ] human gut metagenome; human gut
3332
3258
-
Ala
TGC
[ENA]
¢þ
>WENV182805899
OJVJ01000142
[OJVJ] human gut metagenome; human gut
3437
3361
-
Ile
GAT
[ENA]
¢þ
>WENV182805867
OJVJ01000043
[OJVJ] human gut metagenome; human gut
3461
3374
-
Ser
GGA
[ENA]
¢þ
>WENV182805849
OJVJ01000029
[OJVJ] human gut metagenome; human gut
3478
3394
-
Leu
CAA
[ENA]
¢þ
>WENV182805889
OJVJ01000106
[OJVJ] human gut metagenome; human gut
3528
3452
-
Asp
GTC
[ENA]
¢þ
>WENV182805877
OJVJ01000072
[OJVJ] human gut metagenome; human gut
3754
3680
-
Thr
TGT
[ENA]
¢þ
>WENV182805890
OJVJ01000132
[OJVJ] human gut metagenome; human gut
4138
4066
-
Ala
TGC
[ENA]
¢þ
>WENV182805829
OJVJ01000015
[OJVJ] human gut metagenome; human gut
6471
6388
-
Tyr
GTA
[ENA]
¢þ
>WENV182805817
OJVJ01000010
[OJVJ] human gut metagenome; human gut
6961
7034
+
Phe
GAA
[ENA]
¢þ
>WENV182805888
OJVJ01000104
[OJVJ] human gut metagenome; human gut
7004
6930
-
Arg
TCT
[ENA]
¢þ
>WENV182805887
OJVJ01000104
[OJVJ] human gut metagenome; human gut
7180
7105
-
Ile2
CAT
[ENA]
¢þ
>WENV182805855
OJVJ01000033
[OJVJ] human gut metagenome; human gut
8178
8089
-
Ser
CGA
[ENA]
¢þ
>WENV182805878
OJVJ01000076
[OJVJ] human gut metagenome; human gut
8231
8304
+
Thr
CGT
[ENA]
¢þ
>WENV182805851
OJVJ01000033
[OJVJ] human gut metagenome; human gut
9170
9245
+
Asn
GTT
[ENA]
¢þ
>WENV182805874
OJVJ01000061
[OJVJ] human gut metagenome; human gut
10715
10789
+
Asp
GTC
[ENA]
¢þ
>WENV182805882
OJVJ01000086
[OJVJ] human gut metagenome; human gut
13363
13291
-
Glu
CTC
[ENA]
¢þ
>WENV182805881
OJVJ01000086
[OJVJ] human gut metagenome; human gut
13528
13441
-
Ser
GCT
[ENA]
¢þ
>WENV182805886
OJVJ01000092
[OJVJ] human gut metagenome; human gut
14047
14121
+
Ile2
CAT
[ENA]
¢þ
>WENV182805873
OJVJ01000058
[OJVJ] human gut metagenome; human gut
14715
14642
-
fMet
CAT
[ENA]
¢þ
>WENV182805885
OJVJ01000087
[OJVJ] human gut metagenome; human gut
17369
17295
-
Gly
TCC
[ENA]
¢þ
>WENV182805884
OJVJ01000087
[OJVJ] human gut metagenome; human gut
17448
17373
-
Thr
TGT
[ENA]
¢þ
>WENV182805883
OJVJ01000087
[OJVJ] human gut metagenome; human gut
17604
17529
-
Ile2
CAT
[ENA]
¢þ
>WENV182805879
OJVJ01000082
[OJVJ] human gut metagenome; human gut
18264
18337
+
Lys
CTT
[ENA]
¢þ
>WENV182805880
OJVJ01000082
[OJVJ] human gut metagenome; human gut
21626
21699
+
Lys
CTT
[ENA]
¢þ
>WENV182805856
OJVJ01000034
[OJVJ] human gut metagenome; human gut
28907
28982
+
Thr
CGT
[ENA]
¢þ
>WENV182805871
OJVJ01000047
[OJVJ] human gut metagenome; human gut
32881
32955
+
Arg
TCT
[ENA]
¢þ
>WENV182805809
OJVJ01000006
[OJVJ] human gut metagenome; human gut
35393
35469
+
Pro
GGG
[ENA]
¢þ
>WENV182805850
OJVJ01000032
[OJVJ] human gut metagenome; human gut
36220
36148
-
Arg
CCT
[ENA]
¢þ
>WENV182805869
OJVJ01000044
[OJVJ] human gut metagenome; human gut
37619
37545
-
Asn
GTT
[ENA]
¢þ
>WENV182805868
OJVJ01000044
[OJVJ] human gut metagenome; human gut
37722
37648
-
Asn
GTT
[ENA]
¢þ
>WENV182805863
OJVJ01000037
[OJVJ] human gut metagenome; human gut
43287
43212
-
Pro
GGG
[ENA]
¢þ
>WENV182805854
OJVJ01000033
[OJVJ] human gut metagenome; human gut
49135
49060
-
Asn
GTT
[ENA]
¢þ
>WENV182805853
OJVJ01000033
[OJVJ] human gut metagenome; human gut
51544
51469
-
Asn
GTT
[ENA]
¢þ
>WENV182805852
OJVJ01000033
[OJVJ] human gut metagenome; human gut
53293
53368
+
Asn
GTT
[ENA]
¢þ
>WENV182805872
OJVJ01000056
[OJVJ] human gut metagenome; human gut
58074
57998
-
Arg
ACG
[ENA]
¢þ
>WENV182805864
OJVJ01000041
[OJVJ] human gut metagenome; human gut
59901
59977
+
Pro
CGG
[ENA]
¢þ
>WENV182805826
OJVJ01000014
[OJVJ] human gut metagenome; human gut
60614
60699
+
Ser
TGA
[ENA]
¢þ
>WENV182805866
OJVJ01000042
[OJVJ] human gut metagenome; human gut
60694
60619
-
Val
TAC
[ENA]
¢þ
>WENV182805865
OJVJ01000042
[OJVJ] human gut metagenome; human gut
60798
60723
-
Val
TAC
[ENA]
¢þ
>WENV182805836
OJVJ01000023
[OJVJ] human gut metagenome; human gut
62138
62050
-
Ser
GGA
[ENA]
¢þ
>WENV182805823
OJVJ01000011
[OJVJ] human gut metagenome; human gut
63887
63814
-
Trp
CCA
[ENA]
¢þ
>WENV182805822
OJVJ01000011
[OJVJ] human gut metagenome; human gut
65247
65175
-
Thr
GGT
[ENA]
¢þ
>WENV182805821
OJVJ01000011
[OJVJ] human gut metagenome; human gut
65444
65361
-
Tyr
GTA
[ENA]
¢þ
>WENV182805820
OJVJ01000011
[OJVJ] human gut metagenome; human gut
65592
65518
-
Thr
TGT
[ENA]
¢þ
>WENV182805870
OJVJ01000046
[OJVJ] human gut metagenome; human gut
74086
74157
+
Gln
TTG
[ENA]
¢þ
>WENV182805861
OJVJ01000035
[OJVJ] human gut metagenome; human gut
77966
77890
-
Pro
TGG
[ENA]
¢þ
>WENV182805860
OJVJ01000035
[OJVJ] human gut metagenome; human gut
78095
78009
-
Leu
CAG
[ENA]
¢þ
>WENV182805859
OJVJ01000035
[OJVJ] human gut metagenome; human gut
78191
78116
-
His
GTG
[ENA]
¢þ
>WENV182805858
OJVJ01000035
[OJVJ] human gut metagenome; human gut
78326
78250
-
Arg
CCG
[ENA]
¢þ
>WENV182805795
OJVJ01000002
[OJVJ] human gut metagenome; human gut
78542
78617
+
Gly
GCC
[ENA]
¢þ
>WENV182805796
OJVJ01000002
[OJVJ] human gut metagenome; human gut
78671
78744
+
Cys
GCA
[ENA]
¢þ
>WENV182805797
OJVJ01000002
[OJVJ] human gut metagenome; human gut
78757
78843
+
Leu
TAA
[ENA]
¢þ
>WENV182805824
OJVJ01000013
[OJVJ] human gut metagenome; human gut
86594
86681
+
Ser
TGA
[ENA]
¢þ
>WENV182805862
OJVJ01000037
[OJVJ] human gut metagenome; human gut
87899
87970
+
Gln
CTG
[ENA]
¢þ
>WENV182805837
OJVJ01000024
[OJVJ] human gut metagenome; human gut
97022
97096
+
Asp
GTC
[ENA]
¢þ
>WENV182805794
OJVJ01000001
[OJVJ] human gut metagenome; human gut
97781
97699
-
Leu
TAG
[ENA]
¢þ
>WENV182805844
OJVJ01000026
[OJVJ] human gut metagenome; human gut
100571
100497
-
Gln
CTG
[ENA]
¢þ
>WENV182805843
OJVJ01000026
[OJVJ] human gut metagenome; human gut
100683
100609
-
Gln
CTG
[ENA]
¢þ
>WENV182805842
OJVJ01000026
[OJVJ] human gut metagenome; human gut
100808
100732
-
Met
CAT
[ENA]
¢þ
>WENV182805841
OJVJ01000026
[OJVJ] human gut metagenome; human gut
100898
100824
-
Gln
TTG
[ENA]
¢þ
>WENV182805840
OJVJ01000026
[OJVJ] human gut metagenome; human gut
101007
100933
-
Gln
TTG
[ENA]
¢þ
>WENV182805839
OJVJ01000026
[OJVJ] human gut metagenome; human gut
101115
101031
-
Leu
TAG
[ENA]
¢þ
>WENV182805838
OJVJ01000026
[OJVJ] human gut metagenome; human gut
101202
101126
-
Met
CAT
[ENA]
¢þ
>WENV182805845
OJVJ01000027
[OJVJ] human gut metagenome; human gut
108993
109066
+
Gly
CCC
[ENA]
¢þ
>WENV182805831
OJVJ01000020
[OJVJ] human gut metagenome; human gut
109022
109108
+
Leu
CAG
[ENA]
¢þ
>WENV182805832
OJVJ01000020
[OJVJ] human gut metagenome; human gut
109137
109223
+
Leu
CAG
[ENA]
¢þ
>WENV182805833
OJVJ01000020
[OJVJ] human gut metagenome; human gut
109258
109344
+
Leu
CAG
[ENA]
¢þ
>WENV182805857
OJVJ01000035
[OJVJ] human gut metagenome; human gut
112870
112795
-
Trp
CCA
[ENA]
¢þ
>WENV182805848
OJVJ01000029
[OJVJ] human gut metagenome; human gut
118072
117997
-
Gly
GCC
[ENA]
¢þ
>WENV182805847
OJVJ01000029
[OJVJ] human gut metagenome; human gut
118184
118109
-
Gly
GCC
[ENA]
¢þ
>WENV182805846
OJVJ01000029
[OJVJ] human gut metagenome; human gut
118296
118221
-
Gly
GCC
[ENA]
¢þ
>WENV182805830
OJVJ01000018
[OJVJ] human gut metagenome; human gut
119141
119047
-
SeC
TCA
[ENA]
¢þ
>WENV182805805
OJVJ01000005
[OJVJ] human gut metagenome; human gut
121258
121334
+
fMet
CAT
[ENA]
¢þ
>WENV182805818
OJVJ01000010
[OJVJ] human gut metagenome; human gut
129250
129323
+
Trp
CCA
[ENA]
¢þ
>WENV182805815
OJVJ01000009
[OJVJ] human gut metagenome; human gut
131792
131876
+
Tyr
GTA
[ENA]
¢þ
>WENV182805816
OJVJ01000009
[OJVJ] human gut metagenome; human gut
131910
131994
+
Tyr
GTA
[ENA]
¢þ
>WENV182805827
OJVJ01000014
[OJVJ] human gut metagenome; human gut
132411
132496
+
Ser
TGA
[ENA]
¢þ
>WENV182805803
OJVJ01000004
[OJVJ] human gut metagenome; human gut
139288
139362
+
His
GTG
[ENA]
¢þ
>WENV182805800
OJVJ01000003
[OJVJ] human gut metagenome; human gut
141863
141938
+
Ile2
CAT
[ENA]
¢þ
>WENV182805814
OJVJ01000008
[OJVJ] human gut metagenome; human gut
158315
158243
-
Glu
TTC
[ENA]
¢þ
>WENV182805835
OJVJ01000022
[OJVJ] human gut metagenome; human gut
158685
158759
+
Thr
TGT
[ENA]
¢þ
>WENV182805828
OJVJ01000014
[OJVJ] human gut metagenome; human gut
167401
167473
+
Cys
GCA
[ENA]
¢þ
>WENV182805834
OJVJ01000021
[OJVJ] human gut metagenome; human gut
167915
167991
+
Arg
TCT
[ENA]
¢þ
>WENV182805813
OJVJ01000007
[OJVJ] human gut metagenome; human gut
170462
170389
-
Lys
TTT
[ENA]
¢þ
>WENV182805825
OJVJ01000013
[OJVJ] human gut metagenome; human gut
181955
182042
+
Ser
GGA
[ENA]
¢þ
>WENV182805806
OJVJ01000005
[OJVJ] human gut metagenome; human gut
193737
193664
-
Gly
CCC
[ENA]
¢þ
>WENV182805819
OJVJ01000011
[OJVJ] human gut metagenome; human gut
193961
193877
-
Leu
CAA
[ENA]
¢þ
>WENV182805804
OJVJ01000004
[OJVJ] human gut metagenome; human gut
197890
197964
+
Ala
GGC
[ENA]
¢þ
>WENV182805810
OJVJ01000006
[OJVJ] human gut metagenome; human gut
205373
205447
+
Arg
CCT
[ENA]
¢þ
>WENV182805788
OJVJ01000001
[OJVJ] human gut metagenome; human gut
215051
215124
+
Gly
GCC
[ENA]
¢þ
>WENV182805789
OJVJ01000001
[OJVJ] human gut metagenome; human gut
215138
215222
+
Leu
TAA
[ENA]
¢þ
>WENV182805793
OJVJ01000001
[OJVJ] human gut metagenome; human gut
226923
226850
-
Pro
CGG
[ENA]
¢þ
>WENV182805792
OJVJ01000001
[OJVJ] human gut metagenome; human gut
227008
226935
-
Phe
GAA
[ENA]
¢þ
>WENV182805802
OJVJ01000003
[OJVJ] human gut metagenome; human gut
237589
237513
-
fMet
CAT
[ENA]
¢þ
>WENV182805801
OJVJ01000003
[OJVJ] human gut metagenome; human gut
241456
241370
-
Leu
GAG
[ENA]
¢þ
>WENV182805812
OJVJ01000006
[OJVJ] human gut metagenome; human gut
257792
257717
-
Ala
GGC
[ENA]
¢þ
>WENV182805811
OJVJ01000006
[OJVJ] human gut metagenome; human gut
257907
257832
-
Ala
GGC
[ENA]
¢þ
>WENV182805799
OJVJ01000002
[OJVJ] human gut metagenome; human gut
316667
316591
-
Val
GAC
[ENA]
¢þ
>WENV182805798
OJVJ01000002
[OJVJ] human gut metagenome; human gut
316748
316672
-
Val
GAC
[ENA]
¢þ
>WENV182805791
OJVJ01000001
[OJVJ] human gut metagenome; human gut
319217
319143
-
Met
CAT
[ENA]
¢þ
>WENV182805790
OJVJ01000001
[OJVJ] human gut metagenome; human gut
394648
394575
-
Lys
TTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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