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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OJVN] human gut metagenome; human gut
HIT:
46 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182806368
OJVN01001994
[OJVN] human gut metagenome; human gut
66
150
+
Leu
TAG
[ENA]
¢þ
>WENV182806395
OJVN01005964
[OJVN] human gut metagenome; human gut
72
146
+
Asn
GTT
[ENA]
¢þ
>WENV182806381
OJVN01003584
[OJVN] human gut metagenome; human gut
124
48
-
Pro
GGG
[ENA]
¢þ
>WENV182806357
OJVN01000749
[OJVN] human gut metagenome; human gut
128
36
-
Ser
GCT
[ENA]
¢þ
>WENV182806385
OJVN01004023
[OJVN] human gut metagenome; human gut
168
95
-
Gly
CCC
[ENA]
¢þ
>WENV182806369
OJVN01001994
[OJVN] human gut metagenome; human gut
174
248
+
Gln
TTG
[ENA]
¢þ
>WENV182806386
OJVN01004192
[OJVN] human gut metagenome; human gut
203
131
-
Cys
GCA
[ENA]
¢þ
>WENV182806361
OJVN01001318
[OJVN] human gut metagenome; human gut
217
292
+
Asn
GTT
[ENA]
¢þ
>WENV182806384
OJVN01003963
[OJVN] human gut metagenome; human gut
228
301
+
Trp
CCA
[ENA]
¢þ
>WENV182806370
OJVN01001994
[OJVN] human gut metagenome; human gut
264
340
+
Met
CAT
[ENA]
¢þ
>WENV182806372
OJVN01002104
[OJVN] human gut metagenome; human gut
323
399
+
Pro
CGG
[ENA]
¢þ
>WENV182806387
OJVN01004389
[OJVN] human gut metagenome; human gut
351
425
+
Ala
GGC
[ENA]
¢þ
>WENV182806394
OJVN01005845
[OJVN] human gut metagenome; human gut
355
429
+
Thr
TGT
[ENA]
¢þ
>WENV182806392
OJVN01004956
[OJVN] human gut metagenome; human gut
381
308
-
Gly
CCC
[ENA]
¢þ
>WENV182806379
OJVN01003400
[OJVN] human gut metagenome; human gut
381
468
+
Ser
GCT
[ENA]
¢þ
>WENV182806362
OJVN01001747
[OJVN] human gut metagenome; human gut
383
309
-
His
GTG
[ENA]
¢þ
>WENV182806371
OJVN01001994
[OJVN] human gut metagenome; human gut
389
463
+
Gln
CTG
[ENA]
¢þ
>WENV182806390
OJVN01004727
[OJVN] human gut metagenome; human gut
465
538
+
Phe
GAA
[ENA]
¢þ
>WENV182806389
OJVN01004514
[OJVN] human gut metagenome; human gut
528
442
-
Leu
TAA
[ENA]
¢þ
>WENV182806363
OJVN01001923
[OJVN] human gut metagenome; human gut
533
608
+
Ile2
CAT
[ENA]
¢þ
>WENV182806393
OJVN01005467
[OJVN] human gut metagenome; human gut
538
454
-
Leu
TAA
[ENA]
¢þ
>WENV182806377
OJVN01002609
[OJVN] human gut metagenome; human gut
539
615
+
Arg
TCT
[ENA]
¢þ
>WENV182806383
OJVN01003923
[OJVN] human gut metagenome; human gut
541
468
-
Lys
TTT
[ENA]
¢þ
>WENV182806380
OJVN01003400
[OJVN] human gut metagenome; human gut
546
618
+
Glu
CTC
[ENA]
¢þ
>WENV182806391
OJVN01004727
[OJVN] human gut metagenome; human gut
550
623
+
Pro
CGG
[ENA]
¢þ
>WENV182806388
OJVN01004514
[OJVN] human gut metagenome; human gut
614
541
-
Cys
GCA
[ENA]
¢þ
>WENV182806382
OJVN01003818
[OJVN] human gut metagenome; human gut
678
765
+
Ser
GGA
[ENA]
¢þ
>WENV182806364
OJVN01001923
[OJVN] human gut metagenome; human gut
689
764
+
Thr
TGT
[ENA]
¢þ
>WENV182806360
OJVN01001230
[OJVN] human gut metagenome; human gut
746
830
+
Leu
CAA
[ENA]
¢þ
>WENV182806365
OJVN01001923
[OJVN] human gut metagenome; human gut
773
857
+
Tyr
GTA
[ENA]
¢þ
>WENV182806375
OJVN01002324
[OJVN] human gut metagenome; human gut
795
722
-
Gly
GCC
[ENA]
¢þ
>WENV182806376
OJVN01002591
[OJVN] human gut metagenome; human gut
839
765
-
Asp
GTC
[ENA]
¢þ
>WENV182806378
OJVN01003029
[OJVN] human gut metagenome; human gut
865
790
-
Trp
CCA
[ENA]
¢þ
>WENV182806374
OJVN01002324
[OJVN] human gut metagenome; human gut
901
817
-
Leu
GAG
[ENA]
¢þ
>WENV182806366
OJVN01001923
[OJVN] human gut metagenome; human gut
974
1048
+
Gly
TCC
[ENA]
¢þ
>WENV182806373
OJVN01002324
[OJVN] human gut metagenome; human gut
1020
938
-
Leu
CAG
[ENA]
¢þ
>WENV182806367
OJVN01001923
[OJVN] human gut metagenome; human gut
1055
1130
+
Thr
GGT
[ENA]
¢þ
>WENV182806354
OJVN01000258
[OJVN] human gut metagenome; human gut
1349
1273
-
Pro
TGG
[ENA]
¢þ
>WENV182806359
OJVN01001018
[OJVN] human gut metagenome; human gut
1417
1342
-
Phe
GAA
[ENA]
¢þ
>WENV182806353
OJVN01000258
[OJVN] human gut metagenome; human gut
1478
1392
-
Leu
CAG
[ENA]
¢þ
>WENV182806352
OJVN01000077
[OJVN] human gut metagenome; human gut
1774
1849
+
Glu
TTC
[ENA]
¢þ
>WENV182806358
OJVN01000786
[OJVN] human gut metagenome; human gut
1794
1718
-
Asp
GTC
[ENA]
¢þ
>WENV182806356
OJVN01000720
[OJVN] human gut metagenome; human gut
1843
1930
+
Ser
TGA
[ENA]
¢þ
>WENV182806355
OJVN01000259
[OJVN] human gut metagenome; human gut
2245
2170
-
Lys
TTT
[ENA]
¢þ
>WENV182806351
OJVN01000016
[OJVN] human gut metagenome; human gut
3724
3650
-
Ala
TGC
[ENA]
¢þ
>WENV182806350
OJVN01000016
[OJVN] human gut metagenome; human gut
3829
3753
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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