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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJVO] human gut metagenome; human gut
HIT:
99 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182806455
OJVO01000271
[OJVO] human gut metagenome; human gut
45
139
+
SeC
TCA
[ENA]
¢þ
>WENV182806476
OJVO01000723
[OJVO] human gut metagenome; human gut
59
134
+
Asn
GTT
[ENA]
¢þ
>WENV182806475
OJVO01000647
[OJVO] human gut metagenome; human gut
73
158
+
Leu
CAG
[ENA]
¢þ
>WENV182806441
OJVO01000209
[OJVO] human gut metagenome; human gut
76
151
+
Met
CAT
[ENA]
¢þ
>WENV182806479
OJVO01000731
[OJVO] human gut metagenome; human gut
132
58
-
Gly
TCC
[ENA]
¢þ
>WENV182806494
OJVO01001418
[OJVO] human gut metagenome; human gut
134
60
-
Asn
GTT
[ENA]
¢þ
>WENV182806426
OJVO01000050
[OJVO] human gut metagenome; human gut
151
59
-
Ser
GCT
[ENA]
¢þ
>WENV182806442
OJVO01000209
[OJVO] human gut metagenome; human gut
170
245
+
Ile2
CAT
[ENA]
¢þ
>WENV182806482
OJVO01000845
[OJVO] human gut metagenome; human gut
172
86
-
Leu
CAG
[ENA]
¢þ
>WENV182806424
OJVO01000047
[OJVO] human gut metagenome; human gut
200
275
+
Lys
TTT
[ENA]
¢þ
>WENV182806423
OJVO01000039
[OJVO] human gut metagenome; human gut
204
130
-
Gln
CTG
[ENA]
¢þ
>WENV182806443
OJVO01000209
[OJVO] human gut metagenome; human gut
278
367
+
Ser
TGA
[ENA]
¢þ
>WENV182806422
OJVO01000039
[OJVO] human gut metagenome; human gut
328
252
-
Met
CAT
[ENA]
¢þ
>WENV182806478
OJVO01000731
[OJVO] human gut metagenome; human gut
332
248
-
Tyr
GTA
[ENA]
¢þ
>WENV182806493
OJVO01001146
[OJVO] human gut metagenome; human gut
366
281
-
Leu
CAA
[ENA]
¢þ
>WENV182806444
OJVO01000209
[OJVO] human gut metagenome; human gut
400
475
+
fMet
CAT
[ENA]
¢þ
>WENV182806425
OJVO01000047
[OJVO] human gut metagenome; human gut
409
484
+
Lys
TTT
[ENA]
¢þ
>WENV182806477
OJVO01000731
[OJVO] human gut metagenome; human gut
418
343
-
Thr
TGT
[ENA]
¢þ
>WENV182806421
OJVO01000039
[OJVO] human gut metagenome; human gut
426
352
-
Gln
TTG
[ENA]
¢þ
>WENV182806492
OJVO01001146
[OJVO] human gut metagenome; human gut
449
379
-
Cys
GCA
[ENA]
¢þ
>WENV182806445
OJVO01000209
[OJVO] human gut metagenome; human gut
513
589
+
Asp
GTC
[ENA]
¢þ
>WENV182806420
OJVO01000039
[OJVO] human gut metagenome; human gut
537
463
-
Gln
TTG
[ENA]
¢þ
>WENV182806491
OJVO01001146
[OJVO] human gut metagenome; human gut
547
474
-
Gln
TTG
[ENA]
¢þ
>WENV182806446
OJVO01000209
[OJVO] human gut metagenome; human gut
591
661
+
Gly
TCC
[ENA]
¢þ
>WENV182806490
OJVO01001146
[OJVO] human gut metagenome; human gut
633
560
-
His
GTG
[ENA]
¢þ
>WENV182806419
OJVO01000039
[OJVO] human gut metagenome; human gut
645
561
-
Leu
TAG
[ENA]
¢þ
>WENV182806447
OJVO01000209
[OJVO] human gut metagenome; human gut
670
745
+
Ile
GAT
[ENA]
¢þ
>WENV182806418
OJVO01000039
[OJVO] human gut metagenome; human gut
730
654
-
Met
CAT
[ENA]
¢þ
>WENV182806489
OJVO01001146
[OJVO] human gut metagenome; human gut
743
670
-
Trp
CCA
[ENA]
¢þ
>WENV182806448
OJVO01000209
[OJVO] human gut metagenome; human gut
754
843
+
Ser
GCT
[ENA]
¢þ
>WENV182806488
OJVO01001146
[OJVO] human gut metagenome; human gut
829
747
-
Tyr
GTA
[ENA]
¢þ
>WENV182806449
OJVO01000209
[OJVO] human gut metagenome; human gut
857
930
+
Glu
TTC
[ENA]
¢þ
>WENV182806487
OJVO01001146
[OJVO] human gut metagenome; human gut
906
834
-
Phe
GAA
[ENA]
¢þ
>WENV182806486
OJVO01001146
[OJVO] human gut metagenome; human gut
1027
952
-
Asp
GTC
[ENA]
¢þ
>WENV182806485
OJVO01000920
[OJVO] human gut metagenome; human gut
1317
1246
-
Trp
CCA
[ENA]
¢þ
>WENV182806438
OJVO01000176
[OJVO] human gut metagenome; human gut
1323
1251
-
Thr
CGT
[ENA]
¢þ
>WENV182806459
OJVO01000350
[OJVO] human gut metagenome; human gut
1632
1556
-
Asp
GTC
[ENA]
¢þ
>WENV182806473
OJVO01000524
[OJVO] human gut metagenome; human gut
1730
1655
-
Phe
GAA
[ENA]
¢þ
>WENV182806483
OJVO01000865
[OJVO] human gut metagenome; human gut
1787
1712
-
Thr
CGT
[ENA]
¢þ
>WENV182806453
OJVO01000245
[OJVO] human gut metagenome; human gut
2398
2473
+
Asn
GTT
[ENA]
¢þ
>WENV182806484
OJVO01000899
[OJVO] human gut metagenome; human gut
2459
2383
-
Val
GAC
[ENA]
¢þ
>WENV182806481
OJVO01000831
[OJVO] human gut metagenome; human gut
2607
2696
+
Ser
CGA
[ENA]
¢þ
>WENV182806431
OJVO01000113
[OJVO] human gut metagenome; human gut
2754
2829
+
Ala
GGC
[ENA]
¢þ
>WENV182806432
OJVO01000113
[OJVO] human gut metagenome; human gut
2871
2946
+
Ala
GGC
[ENA]
¢þ
>WENV182806457
OJVO01000301
[OJVO] human gut metagenome; human gut
3369
3293
-
Arg
TCT
[ENA]
¢þ
>WENV182806480
OJVO01000799
[OJVO] human gut metagenome; human gut
3427
3353
-
Lys
CTT
[ENA]
¢þ
>WENV182806474
OJVO01000585
[OJVO] human gut metagenome; human gut
3655
3582
-
Arg
CCG
[ENA]
¢þ
>WENV182806417
OJVO01000035
[OJVO] human gut metagenome; human gut
3963
4038
+
Ile2
CAT
[ENA]
¢þ
>WENV182806472
OJVO01000492
[OJVO] human gut metagenome; human gut
5611
5686
+
Arg
TCT
[ENA]
¢þ
>WENV182806462
OJVO01000409
[OJVO] human gut metagenome; human gut
6284
6208
-
Pro
GGG
[ENA]
¢þ
>WENV182806451
OJVO01000225
[OJVO] human gut metagenome; human gut
6727
6651
-
fMet
CAT
[ENA]
¢þ
>WENV182806470
OJVO01000474
[OJVO] human gut metagenome; human gut
6975
6902
-
Pro
TGG
[ENA]
¢þ
>WENV182806469
OJVO01000474
[OJVO] human gut metagenome; human gut
7138
7065
-
Arg
ACG
[ENA]
¢þ
>WENV182806436
OJVO01000128
[OJVO] human gut metagenome; human gut
7219
7144
-
Gly
GCC
[ENA]
¢þ
>WENV182806468
OJVO01000474
[OJVO] human gut metagenome; human gut
7238
7153
-
Leu
TAA
[ENA]
¢þ
>WENV182806467
OJVO01000474
[OJVO] human gut metagenome; human gut
7325
7254
-
Gly
GCC
[ENA]
¢þ
>WENV182806435
OJVO01000128
[OJVO] human gut metagenome; human gut
7363
7288
-
Gly
GCC
[ENA]
¢þ
>WENV182806471
OJVO01000491
[OJVO] human gut metagenome; human gut
7373
7298
-
Trp
CCA
[ENA]
¢þ
>WENV182806466
OJVO01000474
[OJVO] human gut metagenome; human gut
7405
7330
-
Thr
TGT
[ENA]
¢þ
>WENV182806465
OJVO01000474
[OJVO] human gut metagenome; human gut
7494
7411
-
Leu
TAG
[ENA]
¢þ
>WENV182806434
OJVO01000128
[OJVO] human gut metagenome; human gut
7507
7432
-
Gly
GCC
[ENA]
¢þ
>WENV182806464
OJVO01000474
[OJVO] human gut metagenome; human gut
7583
7509
-
Lys
TTT
[ENA]
¢þ
>WENV182806463
OJVO01000474
[OJVO] human gut metagenome; human gut
7662
7588
-
Val
TAC
[ENA]
¢þ
>WENV182806460
OJVO01000377
[OJVO] human gut metagenome; human gut
8394
8480
+
Leu
GAG
[ENA]
¢þ
>WENV182806461
OJVO01000403
[OJVO] human gut metagenome; human gut
9150
9074
-
Val
GAC
[ENA]
¢þ
>WENV182806433
OJVO01000126
[OJVO] human gut metagenome; human gut
9254
9178
-
Arg
TCT
[ENA]
¢þ
>WENV182806409
OJVO01000013
[OJVO] human gut metagenome; human gut
9426
9502
+
Asp
GTC
[ENA]
¢þ
>WENV182806454
OJVO01000270
[OJVO] human gut metagenome; human gut
9998
9924
-
Arg
CCT
[ENA]
¢þ
>WENV182806450
OJVO01000225
[OJVO] human gut metagenome; human gut
10744
10658
-
Leu
GAG
[ENA]
¢þ
>WENV182806458
OJVO01000323
[OJVO] human gut metagenome; human gut
11750
11675
-
Trp
CCA
[ENA]
¢þ
>WENV182806456
OJVO01000272
[OJVO] human gut metagenome; human gut
12462
12534
+
Ala
TGC
[ENA]
¢þ
>WENV182806440
OJVO01000197
[OJVO] human gut metagenome; human gut
13445
13532
+
Ser
TGA
[ENA]
¢þ
>WENV182806452
OJVO01000231
[OJVO] human gut metagenome; human gut
15143
15068
-
Arg
CCT
[ENA]
¢þ
>WENV182806439
OJVO01000181
[OJVO] human gut metagenome; human gut
15624
15696
+
Thr
GGT
[ENA]
¢þ
>WENV182806437
OJVO01000156
[OJVO] human gut metagenome; human gut
17796
17882
+
Leu
GAG
[ENA]
¢þ
>WENV182806406
OJVO01000007
[OJVO] human gut metagenome; human gut
18028
17942
-
Leu
TAA
[ENA]
¢þ
>WENV182806405
OJVO01000007
[OJVO] human gut metagenome; human gut
18115
18042
-
Cys
GCA
[ENA]
¢þ
>WENV182806404
OJVO01000007
[OJVO] human gut metagenome; human gut
18231
18156
-
Gly
GCC
[ENA]
¢þ
>WENV182806411
OJVO01000017
[OJVO] human gut metagenome; human gut
25881
25957
+
Arg
CCG
[ENA]
¢þ
>WENV182806412
OJVO01000017
[OJVO] human gut metagenome; human gut
26013
26088
+
His
GTG
[ENA]
¢þ
>WENV182806413
OJVO01000017
[OJVO] human gut metagenome; human gut
26112
26198
+
Leu
CAG
[ENA]
¢þ
>WENV182806430
OJVO01000094
[OJVO] human gut metagenome; human gut
26115
26041
-
Gln
CTG
[ENA]
¢þ
>WENV182806429
OJVO01000094
[OJVO] human gut metagenome; human gut
26226
26152
-
Gln
CTG
[ENA]
¢þ
>WENV182806414
OJVO01000017
[OJVO] human gut metagenome; human gut
26241
26317
+
Pro
TGG
[ENA]
¢þ
>WENV182806428
OJVO01000085
[OJVO] human gut metagenome; human gut
27831
27757
-
Gln
CTG
[ENA]
¢þ
>WENV182806415
OJVO01000021
[OJVO] human gut metagenome; human gut
29932
30008
+
Arg
TCT
[ENA]
¢þ
>WENV182806407
OJVO01000008
[OJVO] human gut metagenome; human gut
31013
31088
+
Phe
GAA
[ENA]
¢þ
>WENV182806427
OJVO01000074
[OJVO] human gut metagenome; human gut
31741
31655
-
Leu
CAG
[ENA]
¢þ
>WENV182806396
OJVO01000003
[OJVO] human gut metagenome; human gut
31849
31936
+
Ser
GGA
[ENA]
¢þ
>WENV182806416
OJVO01000033
[OJVO] human gut metagenome; human gut
39371
39444
+
Gly
CCC
[ENA]
¢þ
>WENV182806408
OJVO01000009
[OJVO] human gut metagenome; human gut
55696
55770
+
Arg
CCT
[ENA]
¢þ
>WENV182806403
OJVO01000007
[OJVO] human gut metagenome; human gut
66769
66694
-
Thr
TGT
[ENA]
¢þ
>WENV182806410
OJVO01000013
[OJVO] human gut metagenome; human gut
76236
76161
-
Thr
CGT
[ENA]
¢þ
>WENV182806402
OJVO01000007
[OJVO] human gut metagenome; human gut
78796
78707
-
Ser
CGA
[ENA]
¢þ
>WENV182806397
OJVO01000003
[OJVO] human gut metagenome; human gut
79625
79538
-
Ser
TGA
[ENA]
¢þ
>WENV182806398
OJVO01000007
[OJVO] human gut metagenome; human gut
79788
79863
+
Asn
GTT
[ENA]
¢þ
>WENV182806399
OJVO01000007
[OJVO] human gut metagenome; human gut
85029
85104
+
Asn
GTT
[ENA]
¢þ
>WENV182806401
OJVO01000007
[OJVO] human gut metagenome; human gut
94026
93951
-
Asn
GTT
[ENA]
¢þ
>WENV182806400
OJVO01000007
[OJVO] human gut metagenome; human gut
95784
95859
+
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK