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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OJVZ] human gut metagenome; human gut
HIT:
47 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182807789
OJVZ01001651
[OJVZ] human gut metagenome; human gut
20
93
+
Glu
CTC
[ENA]
¢þ
>WENV182807805
OJVZ01005512
[OJVZ] human gut metagenome; human gut
81
168
+
Ser
CGA
[ENA]
¢þ
>WENV182807809
OJVZ01006204
[OJVZ] human gut metagenome; human gut
101
26
-
Pro
TGG
[ENA]
¢þ
>WENV182807798
OJVZ01002897
[OJVZ] human gut metagenome; human gut
122
46
-
Arg
CCG
[ENA]
¢þ
>WENV182807785
OJVZ01000882
[OJVZ] human gut metagenome; human gut
125
51
-
Lys
CTT
[ENA]
¢þ
>WENV182807799
OJVZ01004052
[OJVZ] human gut metagenome; human gut
156
81
-
Ile
GAT
[ENA]
¢þ
>WENV182807795
OJVZ01002628
[OJVZ] human gut metagenome; human gut
174
100
-
Arg
CCG
[ENA]
¢þ
>WENV182807812
OJVZ01006600
[OJVZ] human gut metagenome; human gut
192
265
+
Gly
GCC
[ENA]
¢þ
>WENV182807779
OJVZ01000115
[OJVZ] human gut metagenome; human gut
224
311
+
Leu
GAG
[ENA]
¢þ
>WENV182807803
OJVZ01004615
[OJVZ] human gut metagenome; human gut
234
138
-
SeC
TCA
[ENA]
¢þ
>WENV182807791
OJVZ01002182
[OJVZ] human gut metagenome; human gut
238
163
-
Asn
GTT
[ENA]
¢þ
>WENV182807793
OJVZ01002239
[OJVZ] human gut metagenome; human gut
250
174
-
Asp
GTC
[ENA]
¢þ
>WENV182807813
OJVZ01006600
[OJVZ] human gut metagenome; human gut
297
368
+
Cys
GCA
[ENA]
¢þ
>WENV182807786
OJVZ01001156
[OJVZ] human gut metagenome; human gut
318
394
+
Pro
TGG
[ENA]
¢þ
>WENV182807807
OJVZ01005974
[OJVZ] human gut metagenome; human gut
319
246
-
His
GTG
[ENA]
¢þ
>WENV182807810
OJVZ01006235
[OJVZ] human gut metagenome; human gut
320
395
+
Val
TAC
[ENA]
¢þ
>WENV182807804
OJVZ01005112
[OJVZ] human gut metagenome; human gut
327
402
+
Ile2
CAT
[ENA]
¢þ
>WENV182807801
OJVZ01004235
[OJVZ] human gut metagenome; human gut
366
279
-
Ser
GGA
[ENA]
¢þ
>WENV182807788
OJVZ01001443
[OJVZ] human gut metagenome; human gut
366
293
-
Trp
CCA
[ENA]
¢þ
>WENV182807814
OJVZ01006600
[OJVZ] human gut metagenome; human gut
369
443
+
Val
GAC
[ENA]
¢þ
>WENV182807802
OJVZ01004520
[OJVZ] human gut metagenome; human gut
398
323
-
Thr
CGT
[ENA]
¢þ
>WENV182807811
OJVZ01006235
[OJVZ] human gut metagenome; human gut
400
475
+
Lys
TTT
[ENA]
¢þ
>WENV182807787
OJVZ01001156
[OJVZ] human gut metagenome; human gut
405
478
+
Gly
TCC
[ENA]
¢þ
>WENV182807808
OJVZ01006103
[OJVZ] human gut metagenome; human gut
445
520
+
Arg
TCT
[ENA]
¢þ
>WENV182807806
OJVZ01005974
[OJVZ] human gut metagenome; human gut
463
378
-
Leu
CAA
[ENA]
¢þ
>WENV182807800
OJVZ01004109
[OJVZ] human gut metagenome; human gut
501
588
+
Ser
GGA
[ENA]
¢þ
>WENV182807797
OJVZ01002887
[OJVZ] human gut metagenome; human gut
589
677
+
Ser
TGA
[ENA]
¢þ
>WENV182807796
OJVZ01002716
[OJVZ] human gut metagenome; human gut
607
533
-
His
GTG
[ENA]
¢þ
>WENV182807792
OJVZ01002214
[OJVZ] human gut metagenome; human gut
647
571
-
Arg
TCT
[ENA]
¢þ
>WENV182807794
OJVZ01002271
[OJVZ] human gut metagenome; human gut
682
592
-
Ser
CGA
[ENA]
¢þ
>WENV182807790
OJVZ01001992
[OJVZ] human gut metagenome; human gut
871
796
-
Ala
CGC
[ENA]
¢þ
>WENV182807778
OJVZ01000025
[OJVZ] human gut metagenome; human gut
1230
1305
+
Thr
GGT
[ENA]
¢þ
>WENV182807784
OJVZ01000275
[OJVZ] human gut metagenome; human gut
1246
1171
-
Lys
TTT
[ENA]
¢þ
>WENV182807783
OJVZ01000275
[OJVZ] human gut metagenome; human gut
1325
1250
-
Asn
GTT
[ENA]
¢þ
>WENV182807782
OJVZ01000275
[OJVZ] human gut metagenome; human gut
1407
1333
-
Gly
GCC
[ENA]
¢þ
>WENV182807781
OJVZ01000275
[OJVZ] human gut metagenome; human gut
1486
1411
-
Val
TAC
[ENA]
¢þ
>WENV182807780
OJVZ01000275
[OJVZ] human gut metagenome; human gut
1564
1490
-
Glu
TTC
[ENA]
¢þ
>WENV182807777
OJVZ01000009
[OJVZ] human gut metagenome; human gut
2212
2137
-
Glu
TTC
[ENA]
¢þ
>WENV182807768
OJVZ01000002
[OJVZ] human gut metagenome; human gut
4501
4575
+
Val
TAC
[ENA]
¢þ
>WENV182807769
OJVZ01000002
[OJVZ] human gut metagenome; human gut
4577
4651
+
Lys
TTT
[ENA]
¢þ
>WENV182807770
OJVZ01000002
[OJVZ] human gut metagenome; human gut
4659
4742
+
Leu
TAG
[ENA]
¢þ
>WENV182807771
OJVZ01000002
[OJVZ] human gut metagenome; human gut
4759
4834
+
Thr
TGT
[ENA]
¢þ
>WENV182807772
OJVZ01000002
[OJVZ] human gut metagenome; human gut
4837
4908
+
Gly
GCC
[ENA]
¢þ
>WENV182807773
OJVZ01000002
[OJVZ] human gut metagenome; human gut
4931
5016
+
Leu
TAA
[ENA]
¢þ
>WENV182807774
OJVZ01000002
[OJVZ] human gut metagenome; human gut
5030
5103
+
Arg
ACG
[ENA]
¢þ
>WENV182807775
OJVZ01000002
[OJVZ] human gut metagenome; human gut
5106
5181
+
Pro
TGG
[ENA]
¢þ
>WENV182807776
OJVZ01000002
[OJVZ] human gut metagenome; human gut
5195
5269
+
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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