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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OJWJ] human gut metagenome; human gut
HIT:
86 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182808877
OJWJ01000994
[OJWJ] human gut metagenome; human gut
1
90
+
Ser
TGA
[ENA]
¢þ
>WENV182808868
OJWJ01000615
[OJWJ] human gut metagenome; human gut
64
139
+
Asp
GTC
[ENA]
¢þ
>WENV182808823
OJWJ01000012
[OJWJ] human gut metagenome; human gut
105
181
+
Asp
GTC
[ENA]
¢þ
>WENV182808878
OJWJ01000994
[OJWJ] human gut metagenome; human gut
123
198
+
fMet
CAT
[ENA]
¢þ
>WENV182808869
OJWJ01000615
[OJWJ] human gut metagenome; human gut
185
257
+
Phe
GAA
[ENA]
¢þ
>WENV182808879
OJWJ01000994
[OJWJ] human gut metagenome; human gut
246
322
+
Asp
GTC
[ENA]
¢þ
>WENV182808832
OJWJ01000014
[OJWJ] human gut metagenome; human gut
258
183
-
Lys
TTT
[ENA]
¢þ
>WENV182808870
OJWJ01000615
[OJWJ] human gut metagenome; human gut
262
344
+
Tyr
GTA
[ENA]
¢þ
>WENV182808884
OJWJ01001236
[OJWJ] human gut metagenome; human gut
317
245
-
Thr
CGT
[ENA]
¢þ
>WENV182808880
OJWJ01000994
[OJWJ] human gut metagenome; human gut
324
394
+
Gly
TCC
[ENA]
¢þ
>WENV182808871
OJWJ01000615
[OJWJ] human gut metagenome; human gut
348
421
+
Trp
CCA
[ENA]
¢þ
>WENV182808885
OJWJ01001393
[OJWJ] human gut metagenome; human gut
352
279
-
Arg
CCG
[ENA]
¢þ
>WENV182808864
OJWJ01000062
[OJWJ] human gut metagenome; human gut
370
295
-
Thr
GGT
[ENA]
¢þ
>WENV182808881
OJWJ01000994
[OJWJ] human gut metagenome; human gut
403
478
+
Ile
GAT
[ENA]
¢þ
>WENV182808863
OJWJ01000062
[OJWJ] human gut metagenome; human gut
450
376
-
Gly
TCC
[ENA]
¢þ
>WENV182808872
OJWJ01000615
[OJWJ] human gut metagenome; human gut
458
531
+
His
GTG
[ENA]
¢þ
>WENV182808882
OJWJ01000994
[OJWJ] human gut metagenome; human gut
487
576
+
Ser
GCT
[ENA]
¢þ
>WENV182808873
OJWJ01000615
[OJWJ] human gut metagenome; human gut
544
617
+
Gln
TTG
[ENA]
¢þ
>WENV182808883
OJWJ01000994
[OJWJ] human gut metagenome; human gut
590
663
+
Glu
TTC
[ENA]
¢þ
>WENV182808874
OJWJ01000615
[OJWJ] human gut metagenome; human gut
642
712
+
Cys
GCA
[ENA]
¢þ
>WENV182808862
OJWJ01000062
[OJWJ] human gut metagenome; human gut
654
570
-
Tyr
GTA
[ENA]
¢þ
>WENV182808865
OJWJ01000250
[OJWJ] human gut metagenome; human gut
662
590
-
Thr
GGT
[ENA]
¢þ
>WENV182808876
OJWJ01000626
[OJWJ] human gut metagenome; human gut
713
788
+
Arg
TCT
[ENA]
¢þ
>WENV182808875
OJWJ01000615
[OJWJ] human gut metagenome; human gut
725
810
+
Leu
CAA
[ENA]
¢þ
>WENV182808861
OJWJ01000062
[OJWJ] human gut metagenome; human gut
740
665
-
Thr
TGT
[ENA]
¢þ
>WENV182808867
OJWJ01000563
[OJWJ] human gut metagenome; human gut
858
783
-
Ala
TGC
[ENA]
¢þ
>WENV182808866
OJWJ01000563
[OJWJ] human gut metagenome; human gut
1044
968
-
Ile
GAT
[ENA]
¢þ
>WENV182808849
OJWJ01000033
[OJWJ] human gut metagenome; human gut
2458
2531
+
Ile2
CAT
[ENA]
¢þ
>WENV182808833
OJWJ01000016
[OJWJ] human gut metagenome; human gut
2764
2839
+
Ala
GGC
[ENA]
¢þ
>WENV182808810
OJWJ01000001
[OJWJ] human gut metagenome; human gut
5354
5279
-
Asn
GTT
[ENA]
¢þ
>WENV182808850
OJWJ01000046
[OJWJ] human gut metagenome; human gut
5386
5460
+
Val
TAC
[ENA]
¢þ
>WENV182808851
OJWJ01000046
[OJWJ] human gut metagenome; human gut
5465
5539
+
Lys
TTT
[ENA]
¢þ
>WENV182808852
OJWJ01000046
[OJWJ] human gut metagenome; human gut
5554
5637
+
Leu
TAG
[ENA]
¢þ
>WENV182808853
OJWJ01000046
[OJWJ] human gut metagenome; human gut
5643
5718
+
Thr
TGT
[ENA]
¢þ
>WENV182808854
OJWJ01000046
[OJWJ] human gut metagenome; human gut
5723
5794
+
Gly
GCC
[ENA]
¢þ
>WENV182808855
OJWJ01000046
[OJWJ] human gut metagenome; human gut
5810
5895
+
Leu
TAA
[ENA]
¢þ
>WENV182808856
OJWJ01000046
[OJWJ] human gut metagenome; human gut
5910
5983
+
Arg
ACG
[ENA]
¢þ
>WENV182808857
OJWJ01000046
[OJWJ] human gut metagenome; human gut
5995
6068
+
Pro
TGG
[ENA]
¢þ
>WENV182808858
OJWJ01000046
[OJWJ] human gut metagenome; human gut
6081
6155
+
Ala
TGC
[ENA]
¢þ
>WENV182808859
OJWJ01000046
[OJWJ] human gut metagenome; human gut
6176
6251
+
Met
CAT
[ENA]
¢þ
>WENV182808860
OJWJ01000046
[OJWJ] human gut metagenome; human gut
6270
6345
+
Ile2
CAT
[ENA]
¢þ
>WENV182808836
OJWJ01000020
[OJWJ] human gut metagenome; human gut
19038
19125
+
Ser
TGA
[ENA]
¢þ
>WENV182808824
OJWJ01000012
[OJWJ] human gut metagenome; human gut
19626
19702
+
Asp
GTC
[ENA]
¢þ
>WENV182808834
OJWJ01000016
[OJWJ] human gut metagenome; human gut
22336
22263
-
Arg
CCT
[ENA]
¢þ
>WENV182808809
OJWJ01000001
[OJWJ] human gut metagenome; human gut
29274
29199
-
Asn
GTT
[ENA]
¢þ
>WENV182808800
OJWJ01000001
[OJWJ] human gut metagenome; human gut
31050
31125
+
Asn
GTT
[ENA]
¢þ
>WENV182808848
OJWJ01000031
[OJWJ] human gut metagenome; human gut
41009
41085
+
Pro
GGG
[ENA]
¢þ
>WENV182808835
OJWJ01000018
[OJWJ] human gut metagenome; human gut
48497
48403
-
SeC
TCA
[ENA]
¢þ
>WENV182808808
OJWJ01000001
[OJWJ] human gut metagenome; human gut
49213
49138
-
Asn
GTT
[ENA]
¢þ
>WENV182808801
OJWJ01000001
[OJWJ] human gut metagenome; human gut
50205
50294
+
Ser
CGA
[ENA]
¢þ
>WENV182808840
OJWJ01000023
[OJWJ] human gut metagenome; human gut
52217
52303
+
Leu
GAG
[ENA]
¢þ
>WENV182808847
OJWJ01000026
[OJWJ] human gut metagenome; human gut
54048
53972
-
Pro
TGG
[ENA]
¢þ
>WENV182808841
OJWJ01000023
[OJWJ] human gut metagenome; human gut
54109
54185
+
fMet
CAT
[ENA]
¢þ
>WENV182808846
OJWJ01000026
[OJWJ] human gut metagenome; human gut
54180
54094
-
Leu
CAG
[ENA]
¢þ
>WENV182808845
OJWJ01000026
[OJWJ] human gut metagenome; human gut
54278
54203
-
His
GTG
[ENA]
¢þ
>WENV182808844
OJWJ01000026
[OJWJ] human gut metagenome; human gut
54410
54334
-
Arg
CCG
[ENA]
¢þ
>WENV182808815
OJWJ01000002
[OJWJ] human gut metagenome; human gut
58464
58380
-
Leu
CAA
[ENA]
¢þ
>WENV182808822
OJWJ01000007
[OJWJ] human gut metagenome; human gut
58479
58404
-
Ile2
CAT
[ENA]
¢þ
>WENV182808820
OJWJ01000005
[OJWJ] human gut metagenome; human gut
65418
65342
-
Arg
TCT
[ENA]
¢þ
>WENV182808825
OJWJ01000012
[OJWJ] human gut metagenome; human gut
79415
79340
-
Thr
CGT
[ENA]
¢þ
>WENV182808839
OJWJ01000021
[OJWJ] human gut metagenome; human gut
84196
84123
-
Gly
CCC
[ENA]
¢þ
>WENV182808802
OJWJ01000001
[OJWJ] human gut metagenome; human gut
88341
88416
+
Gly
GCC
[ENA]
¢þ
>WENV182808803
OJWJ01000001
[OJWJ] human gut metagenome; human gut
88455
88528
+
Cys
GCA
[ENA]
¢þ
>WENV182808804
OJWJ01000001
[OJWJ] human gut metagenome; human gut
88542
88628
+
Leu
TAA
[ENA]
¢þ
>WENV182808842
OJWJ01000024
[OJWJ] human gut metagenome; human gut
92469
92393
-
Pro
CGG
[ENA]
¢þ
>WENV182808827
OJWJ01000014
[OJWJ] human gut metagenome; human gut
93647
93723
+
Met
CAT
[ENA]
¢þ
>WENV182808828
OJWJ01000014
[OJWJ] human gut metagenome; human gut
93732
93816
+
Leu
TAG
[ENA]
¢þ
>WENV182808829
OJWJ01000014
[OJWJ] human gut metagenome; human gut
93854
93928
+
Gln
TTG
[ENA]
¢þ
>WENV182808830
OJWJ01000014
[OJWJ] human gut metagenome; human gut
93950
94026
+
Met
CAT
[ENA]
¢þ
>WENV182808831
OJWJ01000014
[OJWJ] human gut metagenome; human gut
94071
94145
+
Gln
CTG
[ENA]
¢þ
>WENV182808843
OJWJ01000026
[OJWJ] human gut metagenome; human gut
99783
99708
-
Trp
CCA
[ENA]
¢þ
>WENV182808838
OJWJ01000020
[OJWJ] human gut metagenome; human gut
115104
115017
-
Ser
GGA
[ENA]
¢þ
>WENV182808819
OJWJ01000004
[OJWJ] human gut metagenome; human gut
117559
117483
-
fMet
CAT
[ENA]
¢þ
>WENV182808837
OJWJ01000020
[OJWJ] human gut metagenome; human gut
118077
117990
-
Ser
GGA
[ENA]
¢þ
>WENV182808826
OJWJ01000013
[OJWJ] human gut metagenome; human gut
129543
129457
-
Leu
CAG
[ENA]
¢þ
>WENV182808821
OJWJ01000007
[OJWJ] human gut metagenome; human gut
180136
180061
-
Phe
GAA
[ENA]
¢þ
>WENV182808814
OJWJ01000002
[OJWJ] human gut metagenome; human gut
201273
201198
-
Gly
GCC
[ENA]
¢þ
>WENV182808813
OJWJ01000002
[OJWJ] human gut metagenome; human gut
201493
201418
-
Gly
GCC
[ENA]
¢þ
>WENV182808812
OJWJ01000002
[OJWJ] human gut metagenome; human gut
201713
201638
-
Gly
GCC
[ENA]
¢þ
>WENV182808811
OJWJ01000002
[OJWJ] human gut metagenome; human gut
240811
240886
+
Phe
GAA
[ENA]
¢þ
>WENV182808816
OJWJ01000004
[OJWJ] human gut metagenome; human gut
290896
290988
+
Ser
GCT
[ENA]
¢þ
>WENV182808817
OJWJ01000004
[OJWJ] human gut metagenome; human gut
290993
291069
+
Arg
ACG
[ENA]
¢þ
>WENV182808818
OJWJ01000004
[OJWJ] human gut metagenome; human gut
291262
291338
+
Arg
ACG
[ENA]
¢þ
>WENV182808807
OJWJ01000001
[OJWJ] human gut metagenome; human gut
303448
303364
-
Tyr
GTA
[ENA]
¢þ
>WENV182808806
OJWJ01000001
[OJWJ] human gut metagenome; human gut
473251
473175
-
Val
GAC
[ENA]
¢þ
>WENV182808805
OJWJ01000001
[OJWJ] human gut metagenome; human gut
473332
473256
-
Val
GAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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