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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJWM] human gut metagenome; human gut
HIT:
111 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182809060
OJWM01000237
[OJWM] human gut metagenome; human gut
52
139
+
Ser
GGA
[ENA]
¢þ
>WENV182809094
OJWM01002415
[OJWM] human gut metagenome; human gut
74
148
+
Arg
CCG
[ENA]
¢þ
>WENV182809092
OJWM01002178
[OJWM] human gut metagenome; human gut
74
149
+
Thr
TGT
[ENA]
¢þ
>WENV182809069
OJWM01000342
[OJWM] human gut metagenome; human gut
101
176
+
Trp
CCA
[ENA]
¢þ
>WENV182809041
OJWM01000093
[OJWM] human gut metagenome; human gut
105
181
+
Asp
GTC
[ENA]
¢þ
>WENV182809097
OJWM01002504
[OJWM] human gut metagenome; human gut
132
60
-
Asp
GTC
[ENA]
¢þ
>WENV182809093
OJWM01002320
[OJWM] human gut metagenome; human gut
186
113
-
Gly
TCC
[ENA]
¢þ
>WENV182809096
OJWM01002504
[OJWM] human gut metagenome; human gut
220
147
-
fMet
CAT
[ENA]
¢þ
>WENV182809037
OJWM01000080
[OJWM] human gut metagenome; human gut
223
298
+
Ile2
CAT
[ENA]
¢þ
>WENV182809070
OJWM01000354
[OJWM] human gut metagenome; human gut
229
305
+
Arg
CCG
[ENA]
¢þ
>WENV182809098
OJWM01003421
[OJWM] human gut metagenome; human gut
253
328
+
Lys
TTT
[ENA]
¢þ
>WENV182809084
OJWM01000767
[OJWM] human gut metagenome; human gut
256
185
-
Trp
CCA
[ENA]
¢þ
>WENV182809089
OJWM01001274
[OJWM] human gut metagenome; human gut
259
186
-
Lys
CTT
[ENA]
¢þ
>WENV182809099
OJWM01003589
[OJWM] human gut metagenome; human gut
276
194
-
Tyr
GTA
[ENA]
¢þ
>WENV182809095
OJWM01002504
[OJWM] human gut metagenome; human gut
324
232
-
Ser
TGA
[ENA]
¢þ
>WENV182809071
OJWM01000354
[OJWM] human gut metagenome; human gut
373
448
+
His
GTG
[ENA]
¢þ
>WENV182809038
OJWM01000080
[OJWM] human gut metagenome; human gut
377
452
+
Thr
TGT
[ENA]
¢þ
>WENV182809039
OJWM01000080
[OJWM] human gut metagenome; human gut
454
530
+
Arg
CCG
[ENA]
¢þ
>WENV182809072
OJWM01000354
[OJWM] human gut metagenome; human gut
469
555
+
Leu
CAG
[ENA]
¢þ
>WENV182809091
OJWM01002138
[OJWM] human gut metagenome; human gut
510
436
-
Lys
CTT
[ENA]
¢þ
>WENV182809087
OJWM01001112
[OJWM] human gut metagenome; human gut
528
601
+
Thr
GGT
[ENA]
¢þ
>WENV182809040
OJWM01000080
[OJWM] human gut metagenome; human gut
532
606
+
Gly
TCC
[ENA]
¢þ
>WENV182809090
OJWM01002116
[OJWM] human gut metagenome; human gut
580
654
+
Asn
GTT
[ENA]
¢þ
>WENV182809086
OJWM01001106
[OJWM] human gut metagenome; human gut
590
515
-
Arg
TCT
[ENA]
¢þ
>WENV182809073
OJWM01000354
[OJWM] human gut metagenome; human gut
600
676
+
Pro
TGG
[ENA]
¢þ
>WENV182809085
OJWM01001076
[OJWM] human gut metagenome; human gut
617
702
+
Leu
CAA
[ENA]
¢þ
>WENV182809088
OJWM01001112
[OJWM] human gut metagenome; human gut
662
735
+
Met
CAT
[ENA]
¢þ
>WENV182809083
OJWM01000755
[OJWM] human gut metagenome; human gut
744
661
-
Leu
CAG
[ENA]
¢þ
>WENV182809075
OJWM01000371
[OJWM] human gut metagenome; human gut
886
962
+
Met
CAT
[ENA]
¢þ
>WENV182809076
OJWM01000371
[OJWM] human gut metagenome; human gut
971
1055
+
Leu
TAG
[ENA]
¢þ
>WENV182809077
OJWM01000371
[OJWM] human gut metagenome; human gut
1079
1153
+
Gln
TTG
[ENA]
¢þ
>WENV182809078
OJWM01000371
[OJWM] human gut metagenome; human gut
1186
1260
+
Gln
TTG
[ENA]
¢þ
>WENV182809079
OJWM01000371
[OJWM] human gut metagenome; human gut
1278
1354
+
Met
CAT
[ENA]
¢þ
>WENV182809080
OJWM01000371
[OJWM] human gut metagenome; human gut
1396
1470
+
Gln
CTG
[ENA]
¢þ
>WENV182809082
OJWM01000423
[OJWM] human gut metagenome; human gut
1464
1540
+
Arg
TCT
[ENA]
¢þ
>WENV182809081
OJWM01000371
[OJWM] human gut metagenome; human gut
1505
1579
+
Gln
CTG
[ENA]
¢þ
>WENV182809074
OJWM01000370
[OJWM] human gut metagenome; human gut
1759
1835
+
Pro
GGG
[ENA]
¢þ
>WENV182808992
OJWM01000011
[OJWM] human gut metagenome; human gut
2118
2192
+
Val
TAC
[ENA]
¢þ
>WENV182808993
OJWM01000011
[OJWM] human gut metagenome; human gut
2197
2271
+
Lys
TTT
[ENA]
¢þ
>WENV182809028
OJWM01000048
[OJWM] human gut metagenome; human gut
2236
2150
-
Leu
GAG
[ENA]
¢þ
>WENV182808994
OJWM01000011
[OJWM] human gut metagenome; human gut
2286
2369
+
Leu
TAG
[ENA]
¢þ
>WENV182809068
OJWM01000319
[OJWM] human gut metagenome; human gut
2327
2244
-
Leu
CAA
[ENA]
¢þ
>WENV182808995
OJWM01000011
[OJWM] human gut metagenome; human gut
2375
2450
+
Thr
TGT
[ENA]
¢þ
>WENV182808996
OJWM01000011
[OJWM] human gut metagenome; human gut
2455
2526
+
Gly
GCC
[ENA]
¢þ
>WENV182808997
OJWM01000011
[OJWM] human gut metagenome; human gut
2542
2627
+
Leu
TAA
[ENA]
¢þ
>WENV182808998
OJWM01000011
[OJWM] human gut metagenome; human gut
2642
2715
+
Arg
ACG
[ENA]
¢þ
>WENV182808999
OJWM01000011
[OJWM] human gut metagenome; human gut
2727
2800
+
Pro
TGG
[ENA]
¢þ
>WENV182809000
OJWM01000011
[OJWM] human gut metagenome; human gut
2813
2887
+
Ala
TGC
[ENA]
¢þ
>WENV182809001
OJWM01000011
[OJWM] human gut metagenome; human gut
2908
2983
+
Met
CAT
[ENA]
¢þ
>WENV182809067
OJWM01000307
[OJWM] human gut metagenome; human gut
2943
2871
-
Arg
CCT
[ENA]
¢þ
>WENV182809002
OJWM01000011
[OJWM] human gut metagenome; human gut
3002
3077
+
Ile2
CAT
[ENA]
¢þ
>WENV182809003
OJWM01000011
[OJWM] human gut metagenome; human gut
3110
3199
+
Ser
TGA
[ENA]
¢þ
>WENV182809004
OJWM01000011
[OJWM] human gut metagenome; human gut
3232
3307
+
fMet
CAT
[ENA]
¢þ
>WENV182809061
OJWM01000237
[OJWM] human gut metagenome; human gut
3280
3367
+
Ser
GGA
[ENA]
¢þ
>WENV182809005
OJWM01000011
[OJWM] human gut metagenome; human gut
3344
3419
+
Asp
GTC
[ENA]
¢þ
>WENV182809006
OJWM01000011
[OJWM] human gut metagenome; human gut
3423
3500
+
Phe
GAA
[ENA]
¢þ
>WENV182809062
OJWM01000240
[OJWM] human gut metagenome; human gut
3493
3417
-
Pro
TGG
[ENA]
¢þ
>WENV182809007
OJWM01000011
[OJWM] human gut metagenome; human gut
3511
3581
+
Gly
TCC
[ENA]
¢þ
>WENV182809008
OJWM01000011
[OJWM] human gut metagenome; human gut
3595
3668
+
Ile
GAT
[ENA]
¢þ
>WENV182809009
OJWM01000011
[OJWM] human gut metagenome; human gut
3678
3767
+
Ser
GCT
[ENA]
¢þ
>WENV182809010
OJWM01000011
[OJWM] human gut metagenome; human gut
3781
3854
+
Glu
TTC
[ENA]
¢þ
>WENV182809066
OJWM01000264
[OJWM] human gut metagenome; human gut
4043
4116
+
Arg
CCG
[ENA]
¢þ
>WENV182809026
OJWM01000042
[OJWM] human gut metagenome; human gut
4450
4361
-
Ser
CGA
[ENA]
¢þ
>WENV182809057
OJWM01000148
[OJWM] human gut metagenome; human gut
4901
4826
-
Asn
GTT
[ENA]
¢þ
>WENV182809046
OJWM01000132
[OJWM] human gut metagenome; human gut
5451
5526
+
Asn
GTT
[ENA]
¢þ
>WENV182809065
OJWM01000246
[OJWM] human gut metagenome; human gut
5571
5496
-
Ala
GGC
[ENA]
¢þ
>WENV182809064
OJWM01000246
[OJWM] human gut metagenome; human gut
5688
5613
-
Ala
GGC
[ENA]
¢þ
>WENV182809056
OJWM01000148
[OJWM] human gut metagenome; human gut
6650
6725
+
Asn
GTT
[ENA]
¢þ
>WENV182809058
OJWM01000151
[OJWM] human gut metagenome; human gut
6870
6795
-
Ile2
CAT
[ENA]
¢þ
>WENV182808991
OJWM01000007
[OJWM] human gut metagenome; human gut
7396
7490
+
SeC
TCA
[ENA]
¢þ
>WENV182809043
OJWM01000122
[OJWM] human gut metagenome; human gut
7677
7750
+
Gly
CCC
[ENA]
¢þ
>WENV182809047
OJWM01000132
[OJWM] human gut metagenome; human gut
7911
7986
+
Asn
GTT
[ENA]
¢þ
>WENV182809063
OJWM01000246
[OJWM] human gut metagenome; human gut
8382
8457
+
Val
TAC
[ENA]
¢þ
>WENV182809059
OJWM01000204
[OJWM] human gut metagenome; human gut
9129
9056
-
Thr
CGT
[ENA]
¢þ
>WENV182809042
OJWM01000093
[OJWM] human gut metagenome; human gut
9540
9616
+
Asp
GTC
[ENA]
¢þ
>WENV182809019
OJWM01000028
[OJWM] human gut metagenome; human gut
10033
10119
+
Leu
GAG
[ENA]
¢þ
>WENV182809020
OJWM01000028
[OJWM] human gut metagenome; human gut
11941
12017
+
fMet
CAT
[ENA]
¢þ
>WENV182809027
OJWM01000047
[OJWM] human gut metagenome; human gut
12603
12527
-
Arg
TCT
[ENA]
¢þ
>WENV182809018
OJWM01000026
[OJWM] human gut metagenome; human gut
15915
15828
-
Ser
TGA
[ENA]
¢þ
>WENV182809044
OJWM01000131
[OJWM] human gut metagenome; human gut
16281
16357
+
Val
GAC
[ENA]
¢þ
>WENV182809045
OJWM01000131
[OJWM] human gut metagenome; human gut
16362
16438
+
Val
GAC
[ENA]
¢þ
>WENV182809055
OJWM01000137
[OJWM] human gut metagenome; human gut
16722
16637
-
Leu
CAA
[ENA]
¢þ
>WENV182809054
OJWM01000137
[OJWM] human gut metagenome; human gut
16805
16735
-
Cys
GCA
[ENA]
¢þ
>WENV182809053
OJWM01000137
[OJWM] human gut metagenome; human gut
16903
16830
-
Gln
TTG
[ENA]
¢þ
>WENV182809052
OJWM01000137
[OJWM] human gut metagenome; human gut
16989
16916
-
His
GTG
[ENA]
¢þ
>WENV182809051
OJWM01000137
[OJWM] human gut metagenome; human gut
17099
17026
-
Trp
CCA
[ENA]
¢þ
>WENV182809050
OJWM01000137
[OJWM] human gut metagenome; human gut
17185
17103
-
Tyr
GTA
[ENA]
¢þ
>WENV182809049
OJWM01000137
[OJWM] human gut metagenome; human gut
17262
17190
-
Phe
GAA
[ENA]
¢þ
>WENV182809048
OJWM01000137
[OJWM] human gut metagenome; human gut
17383
17308
-
Asp
GTC
[ENA]
¢þ
>WENV182809036
OJWM01000070
[OJWM] human gut metagenome; human gut
22097
22021
-
Arg
ACG
[ENA]
¢þ
>WENV182809035
OJWM01000070
[OJWM] human gut metagenome; human gut
22238
22162
-
Arg
ACG
[ENA]
¢þ
>WENV182809017
OJWM01000026
[OJWM] human gut metagenome; human gut
22350
22263
-
Ser
TGA
[ENA]
¢þ
>WENV182809034
OJWM01000070
[OJWM] human gut metagenome; human gut
22379
22303
-
Arg
ACG
[ENA]
¢þ
>WENV182809033
OJWM01000070
[OJWM] human gut metagenome; human gut
22520
22444
-
Arg
ACG
[ENA]
¢þ
>WENV182809032
OJWM01000070
[OJWM] human gut metagenome; human gut
22617
22525
-
Ser
GCT
[ENA]
¢þ
>WENV182809015
OJWM01000019
[OJWM] human gut metagenome; human gut
24726
24650
-
Arg
TCT
[ENA]
¢þ
>WENV182809012
OJWM01000013
[OJWM] human gut metagenome; human gut
25752
25677
-
Arg
TCT
[ENA]
¢þ
>WENV182809011
OJWM01000013
[OJWM] human gut metagenome; human gut
25830
25756
-
Asn
GTT
[ENA]
¢þ
>WENV182809021
OJWM01000029
[OJWM] human gut metagenome; human gut
26071
26147
+
fMet
CAT
[ENA]
¢þ
>WENV182809029
OJWM01000055
[OJWM] human gut metagenome; human gut
29531
29617
+
Leu
CAG
[ENA]
¢þ
>WENV182809030
OJWM01000055
[OJWM] human gut metagenome; human gut
29646
29731
+
Leu
CAG
[ENA]
¢þ
>WENV182809031
OJWM01000055
[OJWM] human gut metagenome; human gut
29764
29850
+
Leu
CAG
[ENA]
¢þ
>WENV182808990
OJWM01000005
[OJWM] human gut metagenome; human gut
36879
36804
-
Arg
CCT
[ENA]
¢þ
>WENV182809024
OJWM01000030
[OJWM] human gut metagenome; human gut
37891
37805
-
Leu
TAA
[ENA]
¢þ
>WENV182809023
OJWM01000030
[OJWM] human gut metagenome; human gut
37976
37903
-
Cys
GCA
[ENA]
¢þ
>WENV182809016
OJWM01000024
[OJWM] human gut metagenome; human gut
38054
38138
+
Tyr
GTA
[ENA]
¢þ
>WENV182809022
OJWM01000030
[OJWM] human gut metagenome; human gut
38103
38028
-
Gly
GCC
[ENA]
¢þ
>WENV182809025
OJWM01000042
[OJWM] human gut metagenome; human gut
38685
38610
-
Asn
GTT
[ENA]
¢þ
>WENV182809014
OJWM01000018
[OJWM] human gut metagenome; human gut
43924
43996
+
Thr
GGT
[ENA]
¢þ
>WENV182809013
OJWM01000015
[OJWM] human gut metagenome; human gut
56526
56598
+
Thr
CGT
[ENA]
¢þ
>WENV182808989
OJWM01000005
[OJWM] human gut metagenome; human gut
86218
86293
+
Arg
TCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK