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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OJWO] human gut metagenome; human gut
HIT:
144 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182809293
OJWO01001384
[OJWO] human gut metagenome; human gut
1
77
+
Arg
TCT
[ENA]
¢þ
>WENV182809309
OJWO01002232
[OJWO] human gut metagenome; human gut
64
153
+
Ser
TGA
[ENA]
¢þ
>WENV182809225
OJWO01000070
[OJWO] human gut metagenome; human gut
67
141
+
Val
TAC
[ENA]
¢þ
>WENV182809321
OJWO01002609
[OJWO] human gut metagenome; human gut
72
161
+
Ser
GGA
[ENA]
¢þ
>WENV182809314
OJWO01002331
[OJWO] human gut metagenome; human gut
76
151
+
Met
CAT
[ENA]
¢þ
>WENV182809294
OJWO01001384
[OJWO] human gut metagenome; human gut
82
157
+
His
GTG
[ENA]
¢þ
>WENV182809288
OJWO01001181
[OJWO] human gut metagenome; human gut
137
61
-
Met
CAT
[ENA]
¢þ
>WENV182809226
OJWO01000070
[OJWO] human gut metagenome; human gut
146
220
+
Lys
TTT
[ENA]
¢þ
>WENV182809269
OJWO01000310
[OJWO] human gut metagenome; human gut
149
76
-
Arg
ACG
[ENA]
¢þ
>WENV182809212
OJWO01000043
[OJWO] human gut metagenome; human gut
150
58
-
Ser
GCT
[ENA]
¢þ
>WENV182809256
OJWO01000255
[OJWO] human gut metagenome; human gut
154
68
-
Leu
GAG
[ENA]
¢þ
>WENV182809295
OJWO01001384
[OJWO] human gut metagenome; human gut
163
237
+
Gln
TTG
[ENA]
¢þ
>WENV182809310
OJWO01002232
[OJWO] human gut metagenome; human gut
163
238
+
fMet
CAT
[ENA]
¢þ
>WENV182809254
OJWO01000205
[OJWO] human gut metagenome; human gut
166
91
-
Lys
TTT
[ENA]
¢þ
>WENV182809315
OJWO01002331
[OJWO] human gut metagenome; human gut
170
245
+
Ile2
CAT
[ENA]
¢þ
>WENV182809324
OJWO01002973
[OJWO] human gut metagenome; human gut
208
282
+
Trp
CCA
[ENA]
¢þ
>WENV182809287
OJWO01001181
[OJWO] human gut metagenome; human gut
219
144
-
fMet
CAT
[ENA]
¢þ
>WENV182809227
OJWO01000070
[OJWO] human gut metagenome; human gut
235
318
+
Leu
TAG
[ENA]
¢þ
>WENV182809282
OJWO01000986
[OJWO] human gut metagenome; human gut
237
312
+
Lys
CTT
[ENA]
¢þ
>WENV182809311
OJWO01002232
[OJWO] human gut metagenome; human gut
240
312
+
Phe
GAA
[ENA]
¢þ
>WENV182809296
OJWO01001384
[OJWO] human gut metagenome; human gut
241
316
+
Lys
TTT
[ENA]
¢þ
>WENV182809268
OJWO01000310
[OJWO] human gut metagenome; human gut
245
161
-
Leu
TAA
[ENA]
¢þ
>WENV182809316
OJWO01002331
[OJWO] human gut metagenome; human gut
278
367
+
Ser
TGA
[ENA]
¢þ
>WENV182809307
OJWO01001490
[OJWO] human gut metagenome; human gut
287
216
-
Trp
CCA
[ENA]
¢þ
>WENV182809297
OJWO01001384
[OJWO] human gut metagenome; human gut
322
405
+
Leu
TAG
[ENA]
¢þ
>WENV182809228
OJWO01000070
[OJWO] human gut metagenome; human gut
324
399
+
Thr
TGT
[ENA]
¢þ
>WENV182809312
OJWO01002232
[OJWO] human gut metagenome; human gut
324
404
+
Tyr
GTA
[ENA]
¢þ
>WENV182809267
OJWO01000310
[OJWO] human gut metagenome; human gut
325
254
-
Gly
GCC
[ENA]
¢þ
>WENV182809286
OJWO01001181
[OJWO] human gut metagenome; human gut
327
239
-
Leu
TAA
[ENA]
¢þ
>WENV182809270
OJWO01000514
[OJWO] human gut metagenome; human gut
376
294
-
Leu
CAA
[ENA]
¢þ
>WENV182809317
OJWO01002331
[OJWO] human gut metagenome; human gut
400
475
+
fMet
CAT
[ENA]
¢þ
>WENV182809229
OJWO01000070
[OJWO] human gut metagenome; human gut
404
475
+
Gly
GCC
[ENA]
¢þ
>WENV182809298
OJWO01001384
[OJWO] human gut metagenome; human gut
409
483
+
Gly
GCC
[ENA]
¢þ
>WENV182809313
OJWO01002232
[OJWO] human gut metagenome; human gut
409
483
+
Gln
TTG
[ENA]
¢þ
>WENV182809266
OJWO01000310
[OJWO] human gut metagenome; human gut
432
358
-
Thr
TGT
[ENA]
¢þ
>WENV182809299
OJWO01001384
[OJWO] human gut metagenome; human gut
490
563
+
Gly
TCC
[ENA]
¢þ
>WENV182809230
OJWO01000070
[OJWO] human gut metagenome; human gut
491
576
+
Leu
TAA
[ENA]
¢þ
>WENV182809325
OJWO01003399
[OJWO] human gut metagenome; human gut
496
421
-
Arg
TCT
[ENA]
¢þ
>WENV182809308
OJWO01002171
[OJWO] human gut metagenome; human gut
499
425
-
Glu
CTC
[ENA]
¢þ
>WENV182809318
OJWO01002331
[OJWO] human gut metagenome; human gut
512
587
+
Asp
GTC
[ENA]
¢þ
>WENV182809265
OJWO01000310
[OJWO] human gut metagenome; human gut
524
441
-
Leu
TAG
[ENA]
¢þ
>WENV182809300
OJWO01001384
[OJWO] human gut metagenome; human gut
574
650
+
Arg
TCT
[ENA]
¢þ
>WENV182809231
OJWO01000070
[OJWO] human gut metagenome; human gut
591
664
+
Arg
ACG
[ENA]
¢þ
>WENV182809319
OJWO01002331
[OJWO] human gut metagenome; human gut
591
668
+
Phe
GAA
[ENA]
¢þ
>WENV182809322
OJWO01002770
[OJWO] human gut metagenome; human gut
594
502
-
Ser
GCT
[ENA]
¢þ
>WENV182809264
OJWO01000310
[OJWO] human gut metagenome; human gut
605
533
-
Lys
TTT
[ENA]
¢þ
>WENV182809285
OJWO01001161
[OJWO] human gut metagenome; human gut
636
560
-
Ile
GAT
[ENA]
¢þ
>WENV182809301
OJWO01001384
[OJWO] human gut metagenome; human gut
654
729
+
Pro
TGG
[ENA]
¢þ
>WENV182809232
OJWO01000070
[OJWO] human gut metagenome; human gut
676
749
+
Pro
TGG
[ENA]
¢þ
>WENV182809323
OJWO01002780
[OJWO] human gut metagenome; human gut
677
602
-
Phe
GAA
[ENA]
¢þ
>WENV182809320
OJWO01002331
[OJWO] human gut metagenome; human gut
679
749
+
Gly
TCC
[ENA]
¢þ
>WENV182809263
OJWO01000310
[OJWO] human gut metagenome; human gut
680
608
-
Asp
GTC
[ENA]
¢þ
>WENV182809279
OJWO01000700
[OJWO] human gut metagenome; human gut
689
763
+
Asn
GTT
[ENA]
¢þ
>WENV182809302
OJWO01001384
[OJWO] human gut metagenome; human gut
744
818
+
Gly
GCC
[ENA]
¢þ
>WENV182809262
OJWO01000310
[OJWO] human gut metagenome; human gut
755
683
-
Val
TAC
[ENA]
¢þ
>WENV182809280
OJWO01000700
[OJWO] human gut metagenome; human gut
769
857
+
Leu
TAA
[ENA]
¢þ
>WENV182809303
OJWO01001384
[OJWO] human gut metagenome; human gut
825
898
+
Gly
TCC
[ENA]
¢þ
>WENV182809281
OJWO01000700
[OJWO] human gut metagenome; human gut
869
945
+
Ile2
CAT
[ENA]
¢þ
>WENV182809292
OJWO01001341
[OJWO] human gut metagenome; human gut
876
951
+
fMet
CAT
[ENA]
¢þ
>WENV182809304
OJWO01001384
[OJWO] human gut metagenome; human gut
905
978
+
Gly
TCC
[ENA]
¢þ
>WENV182809291
OJWO01001259
[OJWO] human gut metagenome; human gut
931
857
-
Arg
CCT
[ENA]
¢þ
>WENV182809305
OJWO01001384
[OJWO] human gut metagenome; human gut
985
1058
+
Gly
TCC
[ENA]
¢þ
>WENV182809290
OJWO01001203
[OJWO] human gut metagenome; human gut
1065
975
-
Ser
GCT
[ENA]
¢þ
>WENV182809306
OJWO01001384
[OJWO] human gut metagenome; human gut
1069
1145
+
Arg
TCT
[ENA]
¢þ
>WENV182809289
OJWO01001203
[OJWO] human gut metagenome; human gut
1181
1091
-
Ser
TGA
[ENA]
¢þ
>WENV182809284
OJWO01001012
[OJWO] human gut metagenome; human gut
1387
1312
-
fMet
CAT
[ENA]
¢þ
>WENV182809283
OJWO01001012
[OJWO] human gut metagenome; human gut
1495
1407
-
Leu
TAA
[ENA]
¢þ
>WENV182809278
OJWO01000607
[OJWO] human gut metagenome; human gut
1851
1767
-
Tyr
GTA
[ENA]
¢þ
>WENV182809277
OJWO01000607
[OJWO] human gut metagenome; human gut
1929
1855
-
Thr
TGT
[ENA]
¢þ
>WENV182809276
OJWO01000607
[OJWO] human gut metagenome; human gut
2033
1958
-
Val
TAC
[ENA]
¢þ
>WENV182809275
OJWO01000607
[OJWO] human gut metagenome; human gut
2125
2041
-
Tyr
GTA
[ENA]
¢þ
>WENV182809273
OJWO01000568
[OJWO] human gut metagenome; human gut
2154
2229
+
Thr
GGT
[ENA]
¢þ
>WENV182809271
OJWO01000529
[OJWO] human gut metagenome; human gut
2199
2273
+
Asn
GTT
[ENA]
¢þ
>WENV182809274
OJWO01000607
[OJWO] human gut metagenome; human gut
2203
2129
-
Thr
TGT
[ENA]
¢þ
>WENV182809272
OJWO01000529
[OJWO] human gut metagenome; human gut
2298
2372
+
Asn
GTT
[ENA]
¢þ
>WENV182809245
OJWO01000184
[OJWO] human gut metagenome; human gut
2468
2395
-
Lys
CTT
[ENA]
¢þ
>WENV182809236
OJWO01000122
[OJWO] human gut metagenome; human gut
3004
3090
+
Leu
CAG
[ENA]
¢þ
>WENV182809237
OJWO01000122
[OJWO] human gut metagenome; human gut
3119
3205
+
Leu
CAG
[ENA]
¢þ
>WENV182809238
OJWO01000122
[OJWO] human gut metagenome; human gut
3240
3326
+
Leu
CAG
[ENA]
¢þ
>WENV182809246
OJWO01000186
[OJWO] human gut metagenome; human gut
3423
3347
-
Asp
GTC
[ENA]
¢þ
>WENV182809257
OJWO01000308
[OJWO] human gut metagenome; human gut
3508
3583
+
Thr
TGT
[ENA]
¢þ
>WENV182809258
OJWO01000308
[OJWO] human gut metagenome; human gut
3592
3676
+
Tyr
GTA
[ENA]
¢þ
>WENV182809259
OJWO01000308
[OJWO] human gut metagenome; human gut
3793
3867
+
Gly
TCC
[ENA]
¢þ
>WENV182809260
OJWO01000308
[OJWO] human gut metagenome; human gut
3874
3949
+
Thr
GGT
[ENA]
¢þ
>WENV182809192
OJWO01000021
[OJWO] human gut metagenome; human gut
4044
3969
-
Arg
TCT
[ENA]
¢þ
>WENV182809261
OJWO01000310
[OJWO] human gut metagenome; human gut
4078
4004
-
Ala
TGC
[ENA]
¢þ
>WENV182809201
OJWO01000026
[OJWO] human gut metagenome; human gut
4604
4528
-
fMet
CAT
[ENA]
¢þ
>WENV182809199
OJWO01000025
[OJWO] human gut metagenome; human gut
6505
6418
-
Ser
GGA
[ENA]
¢þ
>WENV182809224
OJWO01000067
[OJWO] human gut metagenome; human gut
6668
6594
-
Gln
CTG
[ENA]
¢þ
>WENV182809223
OJWO01000067
[OJWO] human gut metagenome; human gut
6780
6706
-
Gln
CTG
[ENA]
¢þ
>WENV182809222
OJWO01000067
[OJWO] human gut metagenome; human gut
6905
6829
-
Met
CAT
[ENA]
¢þ
>WENV182809221
OJWO01000067
[OJWO] human gut metagenome; human gut
6995
6921
-
Gln
TTG
[ENA]
¢þ
>WENV182809205
OJWO01000028
[OJWO] human gut metagenome; human gut
7022
7106
+
Tyr
GTA
[ENA]
¢þ
>WENV182809220
OJWO01000067
[OJWO] human gut metagenome; human gut
7104
7030
-
Gln
TTG
[ENA]
¢þ
>WENV182809206
OJWO01000028
[OJWO] human gut metagenome; human gut
7140
7224
+
Tyr
GTA
[ENA]
¢þ
>WENV182809219
OJWO01000067
[OJWO] human gut metagenome; human gut
7212
7128
-
Leu
TAG
[ENA]
¢þ
>WENV182809218
OJWO01000067
[OJWO] human gut metagenome; human gut
7299
7223
-
Met
CAT
[ENA]
¢þ
>WENV182809255
OJWO01000218
[OJWO] human gut metagenome; human gut
7794
7707
-
Ser
TGA
[ENA]
¢þ
>WENV182809200
OJWO01000026
[OJWO] human gut metagenome; human gut
8471
8385
-
Leu
GAG
[ENA]
¢þ
>WENV182809216
OJWO01000055
[OJWO] human gut metagenome; human gut
8700
8624
-
Arg
TCT
[ENA]
¢þ
>WENV182809202
OJWO01000027
[OJWO] human gut metagenome; human gut
8714
8788
+
Arg
CCT
[ENA]
¢þ
>WENV182809248
OJWO01000188
[OJWO] human gut metagenome; human gut
8725
8807
+
Tyr
GTA
[ENA]
¢þ
>WENV182809215
OJWO01000055
[OJWO] human gut metagenome; human gut
8790
8714
-
Arg
TCG
[ENA]
¢þ
>WENV182809249
OJWO01000188
[OJWO] human gut metagenome; human gut
8811
8884
+
Trp
CCA
[ENA]
¢þ
>WENV182809214
OJWO01000055
[OJWO] human gut metagenome; human gut
8873
8798
-
Ile2
CAT
[ENA]
¢þ
>WENV182809250
OJWO01000188
[OJWO] human gut metagenome; human gut
8921
8994
+
His
GTG
[ENA]
¢þ
>WENV182809251
OJWO01000188
[OJWO] human gut metagenome; human gut
9007
9080
+
Gln
TTG
[ENA]
¢þ
>WENV182809252
OJWO01000188
[OJWO] human gut metagenome; human gut
9105
9175
+
Cys
GCA
[ENA]
¢þ
>WENV182809253
OJWO01000188
[OJWO] human gut metagenome; human gut
9188
9273
+
Leu
CAA
[ENA]
¢þ
>WENV182809247
OJWO01000187
[OJWO] human gut metagenome; human gut
9280
9355
+
Thr
CGT
[ENA]
¢þ
>WENV182809244
OJWO01000182
[OJWO] human gut metagenome; human gut
11759
11684
-
Trp
CCA
[ENA]
¢þ
>WENV182809196
OJWO01000022
[OJWO] human gut metagenome; human gut
12309
12220
-
Ser
CGA
[ENA]
¢þ
>WENV182809234
OJWO01000110
[OJWO] human gut metagenome; human gut
12316
12227
-
Ser
CGA
[ENA]
¢þ
>WENV182809193
OJWO01000022
[OJWO] human gut metagenome; human gut
13301
13376
+
Asn
GTT
[ENA]
¢þ
>WENV182809233
OJWO01000083
[OJWO] human gut metagenome; human gut
14289
14213
-
fMet
CAT
[ENA]
¢þ
>WENV182809239
OJWO01000126
[OJWO] human gut metagenome; human gut
15719
15791
+
Thr
GGT
[ENA]
¢þ
>WENV182809243
OJWO01000131
[OJWO] human gut metagenome; human gut
17856
17780
-
Pro
TGG
[ENA]
¢þ
>WENV182809242
OJWO01000131
[OJWO] human gut metagenome; human gut
17985
17899
-
Leu
CAG
[ENA]
¢þ
>WENV182809241
OJWO01000131
[OJWO] human gut metagenome; human gut
18081
18006
-
His
GTG
[ENA]
¢þ
>WENV182809240
OJWO01000131
[OJWO] human gut metagenome; human gut
18216
18140
-
Arg
CCG
[ENA]
¢þ
>WENV182809235
OJWO01000121
[OJWO] human gut metagenome; human gut
18956
19031
+
Phe
GAA
[ENA]
¢þ
>WENV182809217
OJWO01000064
[OJWO] human gut metagenome; human gut
28921
28996
+
Phe
GAA
[ENA]
¢þ
>WENV182809213
OJWO01000045
[OJWO] human gut metagenome; human gut
30161
30234
+
Arg
CCG
[ENA]
¢þ
>WENV182809211
OJWO01000039
[OJWO] human gut metagenome; human gut
35983
36056
+
Gly
CCC
[ENA]
¢þ
>WENV182809198
OJWO01000024
[OJWO] human gut metagenome; human gut
38091
38015
-
Val
GAC
[ENA]
¢þ
>WENV182809197
OJWO01000024
[OJWO] human gut metagenome; human gut
38172
38096
-
Val
GAC
[ENA]
¢þ
>WENV182809183
OJWO01000003
[OJWO] human gut metagenome; human gut
39092
39186
+
SeC
TCA
[ENA]
¢þ
>WENV182809208
OJWO01000030
[OJWO] human gut metagenome; human gut
41589
41513
-
Pro
CGG
[ENA]
¢þ
>WENV182809190
OJWO01000019
[OJWO] human gut metagenome; human gut
51270
51183
-
Ser
GGA
[ENA]
¢þ
>WENV182809191
OJWO01000021
[OJWO] human gut metagenome; human gut
53381
53456
+
Arg
CCT
[ENA]
¢þ
>WENV182809195
OJWO01000022
[OJWO] human gut metagenome; human gut
55675
55600
-
Asn
GTT
[ENA]
¢þ
>WENV182809194
OJWO01000022
[OJWO] human gut metagenome; human gut
57424
57499
+
Asn
GTT
[ENA]
¢þ
>WENV182809185
OJWO01000012
[OJWO] human gut metagenome; human gut
57526
57451
-
Ile2
CAT
[ENA]
¢þ
>WENV182809210
OJWO01000031
[OJWO] human gut metagenome; human gut
58168
58092
-
Arg
ACG
[ENA]
¢þ
>WENV182809209
OJWO01000031
[OJWO] human gut metagenome; human gut
58307
58231
-
Arg
ACG
[ENA]
¢þ
>WENV182809207
OJWO01000029
[OJWO] human gut metagenome; human gut
59434
59518
+
Leu
CAA
[ENA]
¢þ
>WENV182809204
OJWO01000027
[OJWO] human gut metagenome; human gut
61139
61064
-
Ala
GGC
[ENA]
¢þ
>WENV182809203
OJWO01000027
[OJWO] human gut metagenome; human gut
61254
61179
-
Ala
GGC
[ENA]
¢þ
>WENV182809186
OJWO01000014
[OJWO] human gut metagenome; human gut
63084
63159
+
Gly
GCC
[ENA]
¢þ
>WENV182809187
OJWO01000014
[OJWO] human gut metagenome; human gut
63213
63286
+
Cys
GCA
[ENA]
¢þ
>WENV182809188
OJWO01000014
[OJWO] human gut metagenome; human gut
63299
63385
+
Leu
TAA
[ENA]
¢þ
>WENV182809189
OJWO01000018
[OJWO] human gut metagenome; human gut
77752
77824
+
Thr
CGT
[ENA]
¢þ
>WENV182809184
OJWO01000005
[OJWO] human gut metagenome; human gut
111096
111172
+
Arg
TCT
[ENA]
¢þ
>WENV182809182
OJWO01000001
[OJWO] human gut metagenome; human gut
114645
114569
-
Pro
GGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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