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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OJWT] human gut metagenome; human gut
HIT:
29 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182809868
OJWT01001350
[OJWT] human gut metagenome; human gut
122
198
+
Asp
GTC
[ENA]
¢þ
>WENV182809870
OJWT01001628
[OJWT] human gut metagenome; human gut
152
77
-
His
GTG
[ENA]
¢þ
>WENV182809861
OJWT01001027
[OJWT] human gut metagenome; human gut
209
133
-
Val
GAC
[ENA]
¢þ
>WENV182809856
OJWT01000842
[OJWT] human gut metagenome; human gut
218
131
-
Ser
GGA
[ENA]
¢þ
>WENV182809869
OJWT01001628
[OJWT] human gut metagenome; human gut
284
208
-
Arg
CCG
[ENA]
¢þ
>WENV182809853
OJWT01000705
[OJWT] human gut metagenome; human gut
369
294
-
Phe
GAA
[ENA]
¢þ
>WENV182809862
OJWT01001084
[OJWT] human gut metagenome; human gut
379
303
-
Pro
GGG
[ENA]
¢þ
>WENV182809852
OJWT01000673
[OJWT] human gut metagenome; human gut
473
400
-
Gly
CCC
[ENA]
¢þ
>WENV182809857
OJWT01000904
[OJWT] human gut metagenome; human gut
493
418
-
Asn
GTT
[ENA]
¢þ
>WENV182809865
OJWT01001323
[OJWT] human gut metagenome; human gut
549
624
+
Gly
GCC
[ENA]
¢þ
>WENV182809872
OJWT01002760
[OJWT] human gut metagenome; human gut
564
491
-
Arg
CCT
[ENA]
¢þ
>WENV182809855
OJWT01000821
[OJWT] human gut metagenome; human gut
627
702
+
Lys
TTT
[ENA]
¢þ
>WENV182809866
OJWT01001323
[OJWT] human gut metagenome; human gut
663
736
+
Cys
GCA
[ENA]
¢þ
>WENV182809847
OJWT01000145
[OJWT] human gut metagenome; human gut
705
629
-
Pro
CGG
[ENA]
¢þ
>WENV182809867
OJWT01001323
[OJWT] human gut metagenome; human gut
749
835
+
Leu
TAA
[ENA]
¢þ
>WENV182809845
OJWT01000062
[OJWT] human gut metagenome; human gut
886
978
+
Ser
GCT
[ENA]
¢þ
>WENV182809871
OJWT01001930
[OJWT] human gut metagenome; human gut
894
969
+
Ala
GGC
[ENA]
¢þ
>WENV182809846
OJWT01000062
[OJWT] human gut metagenome; human gut
983
1059
+
Arg
ACG
[ENA]
¢þ
>WENV182809860
OJWT01001018
[OJWT] human gut metagenome; human gut
1053
1139
+
Leu
CAG
[ENA]
¢þ
>WENV182809850
OJWT01000370
[OJWT] human gut metagenome; human gut
1077
1161
+
Tyr
GTA
[ENA]
¢þ
>WENV182809863
OJWT01001188
[OJWT] human gut metagenome; human gut
1222
1297
+
Ile2
CAT
[ENA]
¢þ
>WENV182809848
OJWT01000270
[OJWT] human gut metagenome; human gut
1282
1207
-
Thr
CGT
[ENA]
¢þ
>WENV182809864
OJWT01001204
[OJWT] human gut metagenome; human gut
1354
1438
+
Ser
TGA
[ENA]
¢þ
>WENV182809858
OJWT01000971
[OJWT] human gut metagenome; human gut
1435
1510
+
Thr
TGT
[ENA]
¢þ
>WENV182809851
OJWT01000463
[OJWT] human gut metagenome; human gut
1468
1382
-
Leu
GAG
[ENA]
¢þ
>WENV182809854
OJWT01000798
[OJWT] human gut metagenome; human gut
1476
1560
+
Leu
CAA
[ENA]
¢þ
>WENV182809859
OJWT01000971
[OJWT] human gut metagenome; human gut
1519
1603
+
Tyr
GTA
[ENA]
¢þ
>WENV182809849
OJWT01000279
[OJWT] human gut metagenome; human gut
1634
1710
+
fMet
CAT
[ENA]
¢þ
>WENV182809844
OJWT01000055
[OJWT] human gut metagenome; human gut
1806
1880
+
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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