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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[OJXE] human gut metagenome; human gut
HIT:
64 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182810771
OJXE01001007
[OJXE] human gut metagenome; human gut
58
133
+
Ala
GGC
[ENA]
¢þ
>WENV182810756
OJXE01000183
[OJXE] human gut metagenome; human gut
79
154
+
Thr
GGT
[ENA]
¢þ
>WENV182810787
OJXE01002582
[OJXE] human gut metagenome; human gut
89
15
-
Lys
TTT
[ENA]
¢þ
>WENV182810786
OJXE01002582
[OJXE] human gut metagenome; human gut
170
95
-
Thr
TGT
[ENA]
¢þ
>WENV182810777
OJXE01001430
[OJXE] human gut metagenome; human gut
216
130
-
Leu
TAA
[ENA]
¢þ
>WENV182810789
OJXE01003449
[OJXE] human gut metagenome; human gut
234
147
-
Ser
TGA
[ENA]
¢þ
>WENV182810785
OJXE01002582
[OJXE] human gut metagenome; human gut
252
177
-
Val
TAC
[ENA]
¢þ
>WENV182810776
OJXE01001430
[OJXE] human gut metagenome; human gut
303
230
-
Cys
GCA
[ENA]
¢þ
>WENV182810782
OJXE01001862
[OJXE] human gut metagenome; human gut
309
215
-
SeC
TCA
[ENA]
¢þ
>WENV182810745
OJXE01000033
[OJXE] human gut metagenome; human gut
311
235
-
Met
CAT
[ENA]
¢þ
>WENV182810727
OJXE01000001
[OJXE] human gut metagenome; human gut
362
437
+
Trp
CCA
[ENA]
¢þ
>WENV182810790
OJXE01003572
[OJXE] human gut metagenome; human gut
373
448
+
Asn
GTT
[ENA]
¢þ
>WENV182810744
OJXE01000033
[OJXE] human gut metagenome; human gut
392
317
-
Thr
GGT
[ENA]
¢þ
>WENV182810775
OJXE01001430
[OJXE] human gut metagenome; human gut
419
344
-
Gly
GCC
[ENA]
¢þ
>WENV182810743
OJXE01000033
[OJXE] human gut metagenome; human gut
499
424
-
fMet
CAT
[ENA]
¢þ
>WENV182810728
OJXE01000001
[OJXE] human gut metagenome; human gut
550
626
+
Arg
ACG
[ENA]
¢þ
>WENV182810788
OJXE01002744
[OJXE] human gut metagenome; human gut
569
485
-
Leu
CAA
[ENA]
¢þ
>WENV182810779
OJXE01001590
[OJXE] human gut metagenome; human gut
570
494
-
Val
GAC
[ENA]
¢þ
>WENV182810742
OJXE01000033
[OJXE] human gut metagenome; human gut
589
505
-
Tyr
GTA
[ENA]
¢þ
>WENV182810783
OJXE01002382
[OJXE] human gut metagenome; human gut
609
685
+
Ile
GAT
[ENA]
¢þ
>WENV182810758
OJXE01000344
[OJXE] human gut metagenome; human gut
651
741
+
Ser
GCT
[ENA]
¢þ
>WENV182810741
OJXE01000033
[OJXE] human gut metagenome; human gut
675
600
-
Thr
TGT
[ENA]
¢þ
>WENV182810784
OJXE01002382
[OJXE] human gut metagenome; human gut
696
771
+
Ala
TGC
[ENA]
¢þ
>WENV182810778
OJXE01001584
[OJXE] human gut metagenome; human gut
705
791
+
Leu
CAG
[ENA]
¢þ
>WENV182810765
OJXE01000636
[OJXE] human gut metagenome; human gut
718
643
-
Ile2
CAT
[ENA]
¢þ
>WENV182810781
OJXE01001692
[OJXE] human gut metagenome; human gut
811
895
+
Tyr
GTA
[ENA]
¢þ
>WENV182810774
OJXE01001254
[OJXE] human gut metagenome; human gut
913
838
-
Asn
GTT
[ENA]
¢þ
>WENV182810770
OJXE01000940
[OJXE] human gut metagenome; human gut
972
1047
+
Phe
GAA
[ENA]
¢þ
>WENV182810773
OJXE01001227
[OJXE] human gut metagenome; human gut
999
926
-
Gly
CCC
[ENA]
¢þ
>WENV182810764
OJXE01000576
[OJXE] human gut metagenome; human gut
1017
1106
+
Ser
CGA
[ENA]
¢þ
>WENV182810749
OJXE01000049
[OJXE] human gut metagenome; human gut
1023
947
-
Arg
TCT
[ENA]
¢þ
>WENV182810780
OJXE01001663
[OJXE] human gut metagenome; human gut
1042
968
-
Arg
CCT
[ENA]
¢þ
>WENV182810767
OJXE01000727
[OJXE] human gut metagenome; human gut
1064
1140
+
Met
CAT
[ENA]
¢þ
>WENV182810761
OJXE01000422
[OJXE] human gut metagenome; human gut
1092
1168
+
Pro
GGG
[ENA]
¢þ
>WENV182810759
OJXE01000345
[OJXE] human gut metagenome; human gut
1157
1233
+
Asp
GTC
[ENA]
¢þ
>WENV182810768
OJXE01000727
[OJXE] human gut metagenome; human gut
1188
1262
+
Gln
CTG
[ENA]
¢þ
>WENV182810748
OJXE01000049
[OJXE] human gut metagenome; human gut
1202
1129
-
Gly
TCC
[ENA]
¢þ
>WENV182810762
OJXE01000533
[OJXE] human gut metagenome; human gut
1263
1187
-
Arg
CCT
[ENA]
¢þ
>WENV182810747
OJXE01000049
[OJXE] human gut metagenome; human gut
1289
1213
-
Pro
TGG
[ENA]
¢þ
>WENV182810772
OJXE01001165
[OJXE] human gut metagenome; human gut
1342
1429
+
Ser
GGA
[ENA]
¢þ
>WENV182810766
OJXE01000697
[OJXE] human gut metagenome; human gut
1477
1391
-
Leu
GAG
[ENA]
¢þ
>WENV182810769
OJXE01000773
[OJXE] human gut metagenome; human gut
2029
1954
-
Lys
TTT
[ENA]
¢þ
>WENV182810763
OJXE01000572
[OJXE] human gut metagenome; human gut
2095
2022
-
Gly
CCC
[ENA]
¢þ
>WENV182810757
OJXE01000337
[OJXE] human gut metagenome; human gut
2176
2100
-
Pro
CGG
[ENA]
¢þ
>WENV182810755
OJXE01000140
[OJXE] human gut metagenome; human gut
2638
2713
+
Gly
GCC
[ENA]
¢þ
>WENV182810760
OJXE01000370
[OJXE] human gut metagenome; human gut
2828
2743
-
Leu
GAG
[ENA]
¢þ
>WENV182810737
OJXE01000025
[OJXE] human gut metagenome; human gut
3996
4084
+
Ser
TGA
[ENA]
¢þ
>WENV182810754
OJXE01000108
[OJXE] human gut metagenome; human gut
5430
5355
-
Lys
CTT
[ENA]
¢þ
>WENV182810736
OJXE01000007
[OJXE] human gut metagenome; human gut
7077
6987
-
Ser
GGA
[ENA]
¢þ
>WENV182810740
OJXE01000030
[OJXE] human gut metagenome; human gut
8860
8950
+
Ser
CGA
[ENA]
¢þ
>WENV182810753
OJXE01000064
[OJXE] human gut metagenome; human gut
10075
10001
-
Arg
CCG
[ENA]
¢þ
>WENV182810750
OJXE01000057
[OJXE] human gut metagenome; human gut
11148
11223
+
His
GTG
[ENA]
¢þ
>WENV182810751
OJXE01000057
[OJXE] human gut metagenome; human gut
11248
11322
+
Gln
TTG
[ENA]
¢þ
>WENV182810752
OJXE01000057
[OJXE] human gut metagenome; human gut
11327
11402
+
Lys
TTT
[ENA]
¢þ
>WENV182810738
OJXE01000027
[OJXE] human gut metagenome; human gut
12235
12309
+
Ile2
CAT
[ENA]
¢þ
>WENV182810746
OJXE01000047
[OJXE] human gut metagenome; human gut
13612
13695
+
Leu
CAA
[ENA]
¢þ
>WENV182810729
OJXE01000001
[OJXE] human gut metagenome; human gut
15350
15439
+
Ser
TGA
[ENA]
¢þ
>WENV182810739
OJXE01000028
[OJXE] human gut metagenome; human gut
17009
16925
-
Leu
TAG
[ENA]
¢þ
>WENV182810730
OJXE01000002
[OJXE] human gut metagenome; human gut
18526
18601
+
Asp
GTC
[ENA]
¢þ
>WENV182810731
OJXE01000002
[OJXE] human gut metagenome; human gut
18607
18682
+
Phe
GAA
[ENA]
¢þ
>WENV182810732
OJXE01000002
[OJXE] human gut metagenome; human gut
18690
18764
+
Gly
GCC
[ENA]
¢þ
>WENV182810733
OJXE01000002
[OJXE] human gut metagenome; human gut
18774
18848
+
Cys
GCA
[ENA]
¢þ
>WENV182810734
OJXE01000002
[OJXE] human gut metagenome; human gut
18863
18951
+
Leu
TAA
[ENA]
¢þ
>WENV182810735
OJXE01000007
[OJXE] human gut metagenome; human gut
32433
32508
+
Asp
GTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK