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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OJXF] human gut metagenome; human gut
HIT:
79 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182810853
OJXF01002096
[OJXF] human gut metagenome; human gut
3
90
+
Ser
TGA
[ENA]
¢þ
>WENV182810869
OJXF01004120
[OJXF] human gut metagenome; human gut
73
-1
-
Asp
GTC
[ENA]
¢þ
>WENV182810849
OJXF01001398
[OJXF] human gut metagenome; human gut
154
79
-
Ala
TGC
[ENA]
¢þ
>WENV182810868
OJXF01004120
[OJXF] human gut metagenome; human gut
156
81
-
Val
TAC
[ENA]
¢þ
>WENV182810857
OJXF01003143
[OJXF] human gut metagenome; human gut
193
117
-
Arg
ACG
[ENA]
¢þ
>WENV182810867
OJXF01004120
[OJXF] human gut metagenome; human gut
239
165
-
Glu
TTC
[ENA]
¢þ
>WENV182810848
OJXF01001398
[OJXF] human gut metagenome; human gut
241
165
-
Ile
GAT
[ENA]
¢þ
>WENV182810862
OJXF01003588
[OJXF] human gut metagenome; human gut
282
207
-
Thr
GGT
[ENA]
¢þ
>WENV182810856
OJXF01003143
[OJXF] human gut metagenome; human gut
289
197
-
Ser
GCT
[ENA]
¢þ
>WENV182810866
OJXF01004120
[OJXF] human gut metagenome; human gut
320
246
-
Thr
TGT
[ENA]
¢þ
>WENV182810847
OJXF01001398
[OJXF] human gut metagenome; human gut
324
248
-
Pro
TGG
[ENA]
¢þ
>WENV182810861
OJXF01003588
[OJXF] human gut metagenome; human gut
363
289
-
Gly
TCC
[ENA]
¢þ
>WENV182810865
OJXF01004120
[OJXF] human gut metagenome; human gut
407
331
-
Asp
GTC
[ENA]
¢þ
>WENV182810864
OJXF01004120
[OJXF] human gut metagenome; human gut
488
413
-
Val
TAC
[ENA]
¢þ
>WENV182810860
OJXF01003588
[OJXF] human gut metagenome; human gut
564
480
-
Tyr
GTA
[ENA]
¢þ
>WENV182810858
OJXF01003448
[OJXF] human gut metagenome; human gut
603
677
+
Arg
CCG
[ENA]
¢þ
>WENV182810859
OJXF01003588
[OJXF] human gut metagenome; human gut
648
573
-
Thr
TGT
[ENA]
¢þ
>WENV182810863
OJXF01003602
[OJXF] human gut metagenome; human gut
664
577
-
Ser
GGA
[ENA]
¢þ
>WENV182810852
OJXF01002067
[OJXF] human gut metagenome; human gut
680
755
+
Thr
CGT
[ENA]
¢þ
>WENV182810855
OJXF01002488
[OJXF] human gut metagenome; human gut
682
596
-
Leu
GAG
[ENA]
¢þ
>WENV182810842
OJXF01001251
[OJXF] human gut metagenome; human gut
837
762
-
Ala
GGC
[ENA]
¢þ
>WENV182810846
OJXF01001386
[OJXF] human gut metagenome; human gut
1062
972
-
Ser
CGA
[ENA]
¢þ
>WENV182810829
OJXF01000158
[OJXF] human gut metagenome; human gut
1076
1000
-
fMet
CAT
[ENA]
¢þ
>WENV182810854
OJXF01002178
[OJXF] human gut metagenome; human gut
1158
1234
+
Arg
CCT
[ENA]
¢þ
>WENV182810841
OJXF01000932
[OJXF] human gut metagenome; human gut
1217
1141
-
Asp
GTC
[ENA]
¢þ
>WENV182810839
OJXF01000560
[OJXF] human gut metagenome; human gut
1311
1387
+
Pro
GGG
[ENA]
¢þ
>WENV182810832
OJXF01000234
[OJXF] human gut metagenome; human gut
1441
1365
-
Pro
CGG
[ENA]
¢þ
>WENV182810851
OJXF01001712
[OJXF] human gut metagenome; human gut
1649
1724
+
Ile2
CAT
[ENA]
¢þ
>WENV182810844
OJXF01001271
[OJXF] human gut metagenome; human gut
1736
1660
-
Val
GAC
[ENA]
¢þ
>WENV182810810
OJXF01000036
[OJXF] human gut metagenome; human gut
1761
1834
+
Gly
CCC
[ENA]
¢þ
>WENV182810843
OJXF01001271
[OJXF] human gut metagenome; human gut
1817
1741
-
Val
GAC
[ENA]
¢þ
>WENV182810850
OJXF01001560
[OJXF] human gut metagenome; human gut
1979
1895
-
Tyr
GTA
[ENA]
¢þ
>WENV182810845
OJXF01001274
[OJXF] human gut metagenome; human gut
2314
2224
-
Ser
GCT
[ENA]
¢þ
>WENV182810838
OJXF01000489
[OJXF] human gut metagenome; human gut
3076
3001
-
Asn
GTT
[ENA]
¢þ
>WENV182810840
OJXF01000778
[OJXF] human gut metagenome; human gut
3407
3332
-
Trp
CCA
[ENA]
¢þ
>WENV182810826
OJXF01000124
[OJXF] human gut metagenome; human gut
3522
3436
-
Leu
GAG
[ENA]
¢þ
>WENV182810827
OJXF01000135
[OJXF] human gut metagenome; human gut
3696
3772
+
Pro
GGG
[ENA]
¢þ
>WENV182810805
OJXF01000026
[OJXF] human gut metagenome; human gut
4438
4349
-
Ser
CGA
[ENA]
¢þ
>WENV182810836
OJXF01000368
[OJXF] human gut metagenome; human gut
4916
4991
+
Thr
TGT
[ENA]
¢þ
>WENV182810837
OJXF01000454
[OJXF] human gut metagenome; human gut
5101
5175
+
Val
TAC
[ENA]
¢þ
>WENV182810803
OJXF01000021
[OJXF] human gut metagenome; human gut
5124
5048
-
Val
GAC
[ENA]
¢þ
>WENV182810830
OJXF01000162
[OJXF] human gut metagenome; human gut
5138
5214
+
Arg
TCT
[ENA]
¢þ
>WENV182810802
OJXF01000021
[OJXF] human gut metagenome; human gut
5205
5129
-
Val
GAC
[ENA]
¢þ
>WENV182810804
OJXF01000026
[OJXF] human gut metagenome; human gut
5430
5505
+
Asn
GTT
[ENA]
¢þ
>WENV182810835
OJXF01000309
[OJXF] human gut metagenome; human gut
6178
6103
-
Lys
TTT
[ENA]
¢þ
>WENV182810834
OJXF01000309
[OJXF] human gut metagenome; human gut
6257
6183
-
Gln
TTG
[ENA]
¢þ
>WENV182810833
OJXF01000309
[OJXF] human gut metagenome; human gut
6357
6282
-
His
GTG
[ENA]
¢þ
>WENV182810798
OJXF01000010
[OJXF] human gut metagenome; human gut
7874
7800
-
Gln
CTG
[ENA]
¢þ
>WENV182810797
OJXF01000010
[OJXF] human gut metagenome; human gut
7986
7912
-
Gln
CTG
[ENA]
¢þ
>WENV182810796
OJXF01000010
[OJXF] human gut metagenome; human gut
8111
8035
-
Met
CAT
[ENA]
¢þ
>WENV182810795
OJXF01000010
[OJXF] human gut metagenome; human gut
8201
8127
-
Gln
TTG
[ENA]
¢þ
>WENV182810831
OJXF01000165
[OJXF] human gut metagenome; human gut
8202
8278
+
Asp
GTC
[ENA]
¢þ
>WENV182810794
OJXF01000010
[OJXF] human gut metagenome; human gut
8310
8236
-
Gln
TTG
[ENA]
¢þ
>WENV182810793
OJXF01000010
[OJXF] human gut metagenome; human gut
8418
8334
-
Leu
TAG
[ENA]
¢þ
>WENV182810792
OJXF01000010
[OJXF] human gut metagenome; human gut
8505
8429
-
Met
CAT
[ENA]
¢þ
>WENV182810825
OJXF01000110
[OJXF] human gut metagenome; human gut
8507
8431
-
Pro
CGG
[ENA]
¢þ
>WENV182810821
OJXF01000082
[OJXF] human gut metagenome; human gut
8562
8636
+
Arg
CCT
[ENA]
¢þ
>WENV182810828
OJXF01000138
[OJXF] human gut metagenome; human gut
10005
10081
+
Arg
TCT
[ENA]
¢þ
>WENV182810822
OJXF01000089
[OJXF] human gut metagenome; human gut
10408
10333
-
Phe
GAA
[ENA]
¢þ
>WENV182810823
OJXF01000094
[OJXF] human gut metagenome; human gut
11073
10998
-
Ile2
CAT
[ENA]
¢þ
>WENV182810813
OJXF01000037
[OJXF] human gut metagenome; human gut
12342
12256
-
Leu
TAA
[ENA]
¢þ
>WENV182810812
OJXF01000037
[OJXF] human gut metagenome; human gut
12428
12355
-
Cys
GCA
[ENA]
¢þ
>WENV182810811
OJXF01000037
[OJXF] human gut metagenome; human gut
12557
12482
-
Gly
GCC
[ENA]
¢þ
>WENV182810819
OJXF01000071
[OJXF] human gut metagenome; human gut
13225
13301
+
Arg
TCT
[ENA]
¢þ
>WENV182810818
OJXF01000061
[OJXF] human gut metagenome; human gut
13615
13531
-
Leu
CAA
[ENA]
¢þ
>WENV182810817
OJXF01000046
[OJXF] human gut metagenome; human gut
15150
15075
-
Phe
GAA
[ENA]
¢þ
>WENV182810816
OJXF01000043
[OJXF] human gut metagenome; human gut
15889
15814
-
Asn
GTT
[ENA]
¢þ
>WENV182810824
OJXF01000097
[OJXF] human gut metagenome; human gut
17301
17226
-
Trp
CCA
[ENA]
¢þ
>WENV182810814
OJXF01000043
[OJXF] human gut metagenome; human gut
17638
17713
+
Asn
GTT
[ENA]
¢þ
>WENV182810820
OJXF01000076
[OJXF] human gut metagenome; human gut
19123
19198
+
Thr
CGT
[ENA]
¢þ
>WENV182810815
OJXF01000043
[OJXF] human gut metagenome; human gut
20047
20122
+
Asn
GTT
[ENA]
¢þ
>WENV182810809
OJXF01000029
[OJXF] human gut metagenome; human gut
26045
25969
-
Pro
TGG
[ENA]
¢þ
>WENV182810808
OJXF01000029
[OJXF] human gut metagenome; human gut
26174
26088
-
Leu
CAG
[ENA]
¢þ
>WENV182810807
OJXF01000029
[OJXF] human gut metagenome; human gut
26270
26195
-
His
GTG
[ENA]
¢þ
>WENV182810806
OJXF01000029
[OJXF] human gut metagenome; human gut
26405
26329
-
Arg
CCG
[ENA]
¢þ
>WENV182810791
OJXF01000008
[OJXF] human gut metagenome; human gut
35187
35093
-
SeC
TCA
[ENA]
¢þ
>WENV182810801
OJXF01000020
[OJXF] human gut metagenome; human gut
40265
40190
-
Ala
GGC
[ENA]
¢þ
>WENV182810799
OJXF01000020
[OJXF] human gut metagenome; human gut
42964
43039
+
Val
TAC
[ENA]
¢þ
>WENV182810800
OJXF01000020
[OJXF] human gut metagenome; human gut
43086
43161
+
Val
TAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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