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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OJXQ] human gut metagenome; human gut
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182812166
OJXQ01000496
[OJXQ] human gut metagenome; human gut
24
96
+
Arg
CCG
[ENA]
¢þ
>WENV182812194
OJXQ01004006
[OJXQ] human gut metagenome; human gut
75
164
+
Ser
TGA
[ENA]
¢þ
>WENV182812154
OJXQ01000128
[OJXQ] human gut metagenome; human gut
81
155
+
Asp
GTC
[ENA]
¢þ
>WENV182812169
OJXQ01000520
[OJXQ] human gut metagenome; human gut
83
8
-
Lys
CTT
[ENA]
¢þ
>WENV182812193
OJXQ01003322
[OJXQ] human gut metagenome; human gut
98
23
-
Ala
TGC
[ENA]
¢þ
>WENV182812172
OJXQ01000711
[OJXQ] human gut metagenome; human gut
112
198
+
Leu
GAG
[ENA]
¢þ
>WENV182812155
OJXQ01000128
[OJXQ] human gut metagenome; human gut
174
247
+
Phe
GAA
[ENA]
¢þ
>WENV182812189
OJXQ01003177
[OJXQ] human gut metagenome; human gut
186
113
-
Trp
CCA
[ENA]
¢þ
>WENV182812195
OJXQ01004006
[OJXQ] human gut metagenome; human gut
197
272
+
fMet
CAT
[ENA]
¢þ
>WENV182812182
OJXQ01002752
[OJXQ] human gut metagenome; human gut
214
288
+
Arg
CCG
[ENA]
¢þ
>WENV182812161
OJXQ01000378
[OJXQ] human gut metagenome; human gut
230
148
-
Tyr
GTA
[ENA]
¢þ
>WENV182812192
OJXQ01003322
[OJXQ] human gut metagenome; human gut
230
154
-
Ile
GAT
[ENA]
¢þ
>WENV182812175
OJXQ01001135
[OJXQ] human gut metagenome; human gut
299
371
+
Val
CAC
[ENA]
¢þ
>WENV182812196
OJXQ01004006
[OJXQ] human gut metagenome; human gut
320
396
+
Asp
GTC
[ENA]
¢þ
>WENV182812188
OJXQ01003177
[OJXQ] human gut metagenome; human gut
398
325
-
Met
CAT
[ENA]
¢þ
>WENV182812197
OJXQ01004006
[OJXQ] human gut metagenome; human gut
398
468
+
Gly
TCC
[ENA]
¢þ
>WENV182812183
OJXQ01002764
[OJXQ] human gut metagenome; human gut
407
480
+
Lys
TTT
[ENA]
¢þ
>WENV182812186
OJXQ01003165
[OJXQ] human gut metagenome; human gut
432
506
+
Gly
TCC
[ENA]
¢þ
>WENV182812198
OJXQ01004006
[OJXQ] human gut metagenome; human gut
477
552
+
Ile
GAT
[ENA]
¢þ
>WENV182812199
OJXQ01004877
[OJXQ] human gut metagenome; human gut
502
427
-
Arg
CCT
[ENA]
¢þ
>WENV182812187
OJXQ01003177
[OJXQ] human gut metagenome; human gut
512
437
-
Thr
GGT
[ENA]
¢þ
>WENV182812171
OJXQ01000553
[OJXQ] human gut metagenome; human gut
561
485
-
fMet
CAT
[ENA]
¢þ
>WENV182812191
OJXQ01003239
[OJXQ] human gut metagenome; human gut
611
526
-
Leu
CAA
[ENA]
¢þ
>WENV182812190
OJXQ01003239
[OJXQ] human gut metagenome; human gut
694
624
-
Cys
GCA
[ENA]
¢þ
>WENV182812157
OJXQ01000228
[OJXQ] human gut metagenome; human gut
695
621
-
Leu
CAA
[ENA]
¢þ
>WENV182812185
OJXQ01002780
[OJXQ] human gut metagenome; human gut
707
617
-
Ser
GCT
[ENA]
¢þ
>WENV182812153
OJXQ01000074
[OJXQ] human gut metagenome; human gut
753
678
-
Ala
TGC
[ENA]
¢þ
>WENV182812184
OJXQ01002780
[OJXQ] human gut metagenome; human gut
784
710
-
Asn
GTT
[ENA]
¢þ
>WENV182812181
OJXQ01002548
[OJXQ] human gut metagenome; human gut
808
737
-
Arg
CCG
[ENA]
¢þ
>WENV182812173
OJXQ01000847
[OJXQ] human gut metagenome; human gut
809
883
+
Arg
TCT
[ENA]
¢þ
>WENV182812152
OJXQ01000074
[OJXQ] human gut metagenome; human gut
840
766
-
Pro
TGG
[ENA]
¢þ
>WENV182812178
OJXQ01001321
[OJXQ] human gut metagenome; human gut
867
940
+
Gly
CCC
[ENA]
¢þ
>WENV182812167
OJXQ01000504
[OJXQ] human gut metagenome; human gut
930
1003
+
Thr
TGT
[ENA]
¢þ
>WENV182812151
OJXQ01000074
[OJXQ] human gut metagenome; human gut
1003
930
-
Arg
ACG
[ENA]
¢þ
>WENV182812174
OJXQ01000980
[OJXQ] human gut metagenome; human gut
1026
951
-
Thr
CGT
[ENA]
¢þ
>WENV182812180
OJXQ01001699
[OJXQ] human gut metagenome; human gut
1093
1166
+
Asn
GTT
[ENA]
¢þ
>WENV182812150
OJXQ01000074
[OJXQ] human gut metagenome; human gut
1103
1018
-
Leu
TAA
[ENA]
¢þ
>WENV182812156
OJXQ01000176
[OJXQ] human gut metagenome; human gut
1112
1188
+
Leu
TAA
[ENA]
¢þ
>WENV182812179
OJXQ01001540
[OJXQ] human gut metagenome; human gut
1170
1244
+
Pro
GGG
[ENA]
¢þ
>WENV182812149
OJXQ01000074
[OJXQ] human gut metagenome; human gut
1190
1119
-
Gly
GCC
[ENA]
¢þ
>WENV182812177
OJXQ01001251
[OJXQ] human gut metagenome; human gut
1233
1151
-
Leu
CAA
[ENA]
¢þ
>WENV182812148
OJXQ01000074
[OJXQ] human gut metagenome; human gut
1270
1195
-
Thr
TGT
[ENA]
¢þ
>WENV182812147
OJXQ01000074
[OJXQ] human gut metagenome; human gut
1359
1276
-
Leu
TAG
[ENA]
¢þ
>WENV182812146
OJXQ01000074
[OJXQ] human gut metagenome; human gut
1448
1374
-
Lys
TTT
[ENA]
¢þ
>WENV182812176
OJXQ01001164
[OJXQ] human gut metagenome; human gut
1492
1565
+
Arg
ACG
[ENA]
¢þ
>WENV182812162
OJXQ01000467
[OJXQ] human gut metagenome; human gut
1503
1574
+
Glu
TTC
[ENA]
¢þ
>WENV182812145
OJXQ01000074
[OJXQ] human gut metagenome; human gut
1527
1453
-
Val
TAC
[ENA]
¢þ
>WENV182812163
OJXQ01000467
[OJXQ] human gut metagenome; human gut
1581
1656
+
Val
TAC
[ENA]
¢þ
>WENV182812164
OJXQ01000467
[OJXQ] human gut metagenome; human gut
1663
1738
+
Thr
TGT
[ENA]
¢þ
>WENV182812165
OJXQ01000467
[OJXQ] human gut metagenome; human gut
1745
1818
+
Lys
TTT
[ENA]
¢þ
>WENV182812170
OJXQ01000537
[OJXQ] human gut metagenome; human gut
1832
1744
-
Ser
GGA
[ENA]
¢þ
>WENV182812160
OJXQ01000308
[OJXQ] human gut metagenome; human gut
2457
2545
+
Ser
GCT
[ENA]
¢þ
>WENV182812168
OJXQ01000520
[OJXQ] human gut metagenome; human gut
2624
2549
-
His
GTG
[ENA]
¢þ
>WENV182812159
OJXQ01000252
[OJXQ] human gut metagenome; human gut
3034
2960
-
Pro
CGG
[ENA]
¢þ
>WENV182812158
OJXQ01000231
[OJXQ] human gut metagenome; human gut
3367
3442
+
Val
TAC
[ENA]
¢þ
>WENV182812144
OJXQ01000055
[OJXQ] human gut metagenome; human gut
3593
3667
+
Ile2
CAT
[ENA]
¢þ
>WENV182812140
OJXQ01000017
[OJXQ] human gut metagenome; human gut
5165
5092
-
Ala
TGC
[ENA]
¢þ
>WENV182812139
OJXQ01000017
[OJXQ] human gut metagenome; human gut
5251
5175
-
Ile
GAT
[ENA]
¢þ
>WENV182812141
OJXQ01000024
[OJXQ] human gut metagenome; human gut
5393
5480
+
Leu
CAG
[ENA]
¢þ
>WENV182812138
OJXQ01000007
[OJXQ] human gut metagenome; human gut
6067
6159
+
Ser
TGA
[ENA]
¢þ
>WENV182812143
OJXQ01000034
[OJXQ] human gut metagenome; human gut
6350
6278
-
Asp
GTC
[ENA]
¢þ
>WENV182812142
OJXQ01000034
[OJXQ] human gut metagenome; human gut
6440
6365
-
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK