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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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|
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HOW TO USE
tRNA gene List
[OJYL] human gut metagenome; human gut
HIT:
46 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182814648
OJYL01000633
[OJYL] human gut metagenome; human gut
20
95
+
Trp
CCA
[ENA]
¢þ
>WENV182814638
OJYL01000432
[OJYL] human gut metagenome; human gut
133
49
-
Tyr
GTA
[ENA]
¢þ
>WENV182814631
OJYL01000301
[OJYL] human gut metagenome; human gut
151
76
-
His
GTG
[ENA]
¢þ
>WENV182814637
OJYL01000432
[OJYL] human gut metagenome; human gut
217
142
-
Thr
TGT
[ENA]
¢þ
>WENV182814652
OJYL01001043
[OJYL] human gut metagenome; human gut
258
334
+
Asp
GTC
[ENA]
¢þ
>WENV182814630
OJYL01000301
[OJYL] human gut metagenome; human gut
295
219
-
Arg
CCG
[ENA]
¢þ
>WENV182814662
OJYL01001887
[OJYL] human gut metagenome; human gut
410
335
-
Val
TAC
[ENA]
¢þ
>WENV182814661
OJYL01001887
[OJYL] human gut metagenome; human gut
488
414
-
Glu
TTC
[ENA]
¢þ
>WENV182814656
OJYL01001270
[OJYL] human gut metagenome; human gut
543
469
-
Ala
TGC
[ENA]
¢þ
>WENV182814658
OJYL01001804
[OJYL] human gut metagenome; human gut
553
478
-
Asn
GTT
[ENA]
¢þ
>WENV182814660
OJYL01001887
[OJYL] human gut metagenome; human gut
573
498
-
Asn
GTT
[ENA]
¢þ
>WENV182814625
OJYL01000223
[OJYL] human gut metagenome; human gut
608
532
-
fMet
CAT
[ENA]
¢þ
>WENV182814657
OJYL01001273
[OJYL] human gut metagenome; human gut
670
594
-
Arg
TCT
[ENA]
¢þ
>WENV182814659
OJYL01001887
[OJYL] human gut metagenome; human gut
670
595
-
Asp
GTC
[ENA]
¢þ
>WENV182814653
OJYL01001129
[OJYL] human gut metagenome; human gut
700
613
-
Ser
TGA
[ENA]
¢þ
>WENV182814618
OJYL01000072
[OJYL] human gut metagenome; human gut
718
643
-
Ile2
CAT
[ENA]
¢þ
>WENV182814649
OJYL01000783
[OJYL] human gut metagenome; human gut
767
692
-
Arg
TCT
[ENA]
¢þ
>WENV182814627
OJYL01000243
[OJYL] human gut metagenome; human gut
833
909
+
Pro
GGG
[ENA]
¢þ
>WENV182814645
OJYL01000534
[OJYL] human gut metagenome; human gut
1194
1119
-
Lys
TTT
[ENA]
¢þ
>WENV182814639
OJYL01000454
[OJYL] human gut metagenome; human gut
1228
1312
+
Leu
CAA
[ENA]
¢þ
>WENV182814628
OJYL01000248
[OJYL] human gut metagenome; human gut
1260
1336
+
Val
GAC
[ENA]
¢þ
>WENV182814644
OJYL01000534
[OJYL] human gut metagenome; human gut
1274
1199
-
Val
TAC
[ENA]
¢þ
>WENV182814655
OJYL01001196
[OJYL] human gut metagenome; human gut
1326
1250
-
Asp
GTC
[ENA]
¢þ
>WENV182814629
OJYL01000248
[OJYL] human gut metagenome; human gut
1341
1417
+
Val
GAC
[ENA]
¢þ
>WENV182814654
OJYL01001155
[OJYL] human gut metagenome; human gut
1371
1463
+
Ser
GCT
[ENA]
¢þ
>WENV182814643
OJYL01000534
[OJYL] human gut metagenome; human gut
1391
1316
-
Val
TAC
[ENA]
¢þ
>WENV182814634
OJYL01000339
[OJYL] human gut metagenome; human gut
1511
1424
-
Ser
GGA
[ENA]
¢þ
>WENV182814623
OJYL01000164
[OJYL] human gut metagenome; human gut
1575
1489
-
Leu
TAA
[ENA]
¢þ
>WENV182814622
OJYL01000164
[OJYL] human gut metagenome; human gut
1660
1587
-
Cys
GCA
[ENA]
¢þ
>WENV182814621
OJYL01000164
[OJYL] human gut metagenome; human gut
1787
1712
-
Gly
GCC
[ENA]
¢þ
>WENV182814651
OJYL01000869
[OJYL] human gut metagenome; human gut
1796
1882
+
Leu
GAG
[ENA]
¢þ
>WENV182814650
OJYL01000851
[OJYL] human gut metagenome; human gut
1799
1883
+
Tyr
GTA
[ENA]
¢þ
>WENV182814633
OJYL01000317
[OJYL] human gut metagenome; human gut
1849
1774
-
Lys
TTT
[ENA]
¢þ
>WENV182814647
OJYL01000593
[OJYL] human gut metagenome; human gut
1924
1999
+
Asn
GTT
[ENA]
¢þ
>WENV182814632
OJYL01000317
[OJYL] human gut metagenome; human gut
1956
1881
-
Lys
TTT
[ENA]
¢þ
>WENV182814642
OJYL01000525
[OJYL] human gut metagenome; human gut
2213
2127
-
Leu
CAG
[ENA]
¢þ
>WENV182814635
OJYL01000369
[OJYL] human gut metagenome; human gut
2231
2156
-
Phe
GAA
[ENA]
¢þ
>WENV182814641
OJYL01000525
[OJYL] human gut metagenome; human gut
2331
2246
-
Leu
CAG
[ENA]
¢þ
>WENV182814626
OJYL01000240
[OJYL] human gut metagenome; human gut
2436
2509
+
Thr
CGT
[ENA]
¢þ
>WENV182814640
OJYL01000525
[OJYL] human gut metagenome; human gut
2446
2360
-
Leu
CAG
[ENA]
¢þ
>WENV182814646
OJYL01000551
[OJYL] human gut metagenome; human gut
2558
2483
-
Ala
GGC
[ENA]
¢þ
>WENV182814636
OJYL01000425
[OJYL] human gut metagenome; human gut
3009
2933
-
Arg
ACG
[ENA]
¢þ
>WENV182814624
OJYL01000174
[OJYL] human gut metagenome; human gut
3751
3823
+
Arg
CCT
[ENA]
¢þ
>WENV182814620
OJYL01000137
[OJYL] human gut metagenome; human gut
3863
3936
+
Gly
CCC
[ENA]
¢þ
>WENV182814617
OJYL01000062
[OJYL] human gut metagenome; human gut
4846
4922
+
Pro
TGG
[ENA]
¢þ
>WENV182814619
OJYL01000106
[OJYL] human gut metagenome; human gut
5193
5099
-
SeC
TCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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