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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJYQ] human gut metagenome; human gut
HIT:
139 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182815318
OJYQ01000818
[OJYQ] human gut metagenome; human gut
55
126
+
Gly
CCC
[ENA]
¢þ
>WENV182815357
OJYQ01003266
[OJYQ] human gut metagenome; human gut
59
133
+
Lys
TTT
[ENA]
¢þ
>WENV182815372
OJYQ01003723
[OJYQ] human gut metagenome; human gut
66
139
+
Pro
TGG
[ENA]
¢þ
>WENV182815344
OJYQ01002610
[OJYQ] human gut metagenome; human gut
73
149
+
Arg
TCT
[ENA]
¢þ
>WENV182815328
OJYQ01001499
[OJYQ] human gut metagenome; human gut
83
8
-
Lys
TTT
[ENA]
¢þ
>WENV182815335
OJYQ01001795
[OJYQ] human gut metagenome; human gut
98
23
-
Ala
TGC
[ENA]
¢þ
>WENV182815260
OJYQ01000012
[OJYQ] human gut metagenome; human gut
101
28
-
Gly
CCC
[ENA]
¢þ
>WENV182815310
OJYQ01000511
[OJYQ] human gut metagenome; human gut
108
182
+
Pro
GGG
[ENA]
¢þ
>WENV182815366
OJYQ01003612
[OJYQ] human gut metagenome; human gut
116
30
-
Leu
GAG
[ENA]
¢þ
>WENV182815353
OJYQ01002855
[OJYQ] human gut metagenome; human gut
133
58
-
Ala
TGC
[ENA]
¢þ
>WENV182815370
OJYQ01003613
[OJYQ] human gut metagenome; human gut
139
63
-
Arg
ACG
[ENA]
¢þ
>WENV182815358
OJYQ01003266
[OJYQ] human gut metagenome; human gut
148
231
+
Leu
TAG
[ENA]
¢þ
>WENV182815373
OJYQ01003723
[OJYQ] human gut metagenome; human gut
152
226
+
Ala
TGC
[ENA]
¢þ
>WENV182815345
OJYQ01002610
[OJYQ] human gut metagenome; human gut
155
230
+
Lys
CTT
[ENA]
¢þ
>WENV182815352
OJYQ01002841
[OJYQ] human gut metagenome; human gut
159
85
-
Ile2
CAT
[ENA]
¢þ
>WENV182815371
OJYQ01003691
[OJYQ] human gut metagenome; human gut
165
240
+
Val
TAC
[ENA]
¢þ
>WENV182815304
OJYQ01000168
[OJYQ] human gut metagenome; human gut
174
100
-
Asp
GTC
[ENA]
¢þ
>WENV182815369
OJYQ01003613
[OJYQ] human gut metagenome; human gut
214
141
-
Gly
TCC
[ENA]
¢þ
>WENV182815359
OJYQ01003266
[OJYQ] human gut metagenome; human gut
237
312
+
Thr
TGT
[ENA]
¢þ
>WENV182815346
OJYQ01002610
[OJYQ] human gut metagenome; human gut
238
313
+
His
GTG
[ENA]
¢þ
>WENV182815364
OJYQ01003289
[OJYQ] human gut metagenome; human gut
241
168
-
Glu
TTC
[ENA]
¢þ
>WENV182815337
OJYQ01001842
[OJYQ] human gut metagenome; human gut
244
329
+
Ser
TGA
[ENA]
¢þ
>WENV182815374
OJYQ01003723
[OJYQ] human gut metagenome; human gut
248
323
+
Met
CAT
[ENA]
¢þ
>WENV182815338
OJYQ01001893
[OJYQ] human gut metagenome; human gut
253
174
-
Gln
TTG
[ENA]
¢þ
>WENV182815343
OJYQ01002435
[OJYQ] human gut metagenome; human gut
255
338
+
Leu
TAG
[ENA]
¢þ
>WENV182815326
OJYQ01001438
[OJYQ] human gut metagenome; human gut
306
218
-
Ser
GCT
[ENA]
¢þ
>WENV182815360
OJYQ01003266
[OJYQ] human gut metagenome; human gut
317
388
+
Gly
GCC
[ENA]
¢þ
>WENV182815347
OJYQ01002610
[OJYQ] human gut metagenome; human gut
319
393
+
Gln
TTG
[ENA]
¢þ
>WENV182815303
OJYQ01000168
[OJYQ] human gut metagenome; human gut
320
247
-
Glu
TTC
[ENA]
¢þ
>WENV182815368
OJYQ01003613
[OJYQ] human gut metagenome; human gut
337
253
-
Tyr
GTA
[ENA]
¢þ
>WENV182815375
OJYQ01003723
[OJYQ] human gut metagenome; human gut
342
417
+
Ile2
CAT
[ENA]
¢þ
>WENV182815341
OJYQ01002194
[OJYQ] human gut metagenome; human gut
351
277
-
Pro
TGG
[ENA]
¢þ
>WENV182815348
OJYQ01002610
[OJYQ] human gut metagenome; human gut
397
472
+
Lys
TTT
[ENA]
¢þ
>WENV182815361
OJYQ01003266
[OJYQ] human gut metagenome; human gut
404
489
+
Leu
TAA
[ENA]
¢þ
>WENV182815355
OJYQ01003191
[OJYQ] human gut metagenome; human gut
408
481
+
Glu
TTC
[ENA]
¢þ
>WENV182815356
OJYQ01003228
[OJYQ] human gut metagenome; human gut
433
507
+
Val
CAC
[ENA]
¢þ
>WENV182815244
OJYQ01000004
[OJYQ] human gut metagenome; human gut
437
362
-
Lys
TTT
[ENA]
¢þ
>WENV182815365
OJYQ01003370
[OJYQ] human gut metagenome; human gut
454
379
-
Thr
TGT
[ENA]
¢þ
>WENV182815331
OJYQ01001756
[OJYQ] human gut metagenome; human gut
459
534
+
Val
TAC
[ENA]
¢þ
>WENV182815363
OJYQ01003276
[OJYQ] human gut metagenome; human gut
477
553
+
Ile
GAT
[ENA]
¢þ
>WENV182815349
OJYQ01002610
[OJYQ] human gut metagenome; human gut
477
560
+
Leu
TAG
[ENA]
¢þ
>WENV182815315
OJYQ01000642
[OJYQ] human gut metagenome; human gut
489
562
+
Trp
CCA
[ENA]
¢þ
>WENV182815354
OJYQ01003175
[OJYQ] human gut metagenome; human gut
503
575
+
Asn
GTT
[ENA]
¢þ
>WENV182815362
OJYQ01003266
[OJYQ] human gut metagenome; human gut
504
577
+
Arg
ACG
[ENA]
¢þ
>WENV182815334
OJYQ01001763
[OJYQ] human gut metagenome; human gut
508
434
-
Arg
CCT
[ENA]
¢þ
>WENV182815367
OJYQ01003613
[OJYQ] human gut metagenome; human gut
520
446
-
Phe
GAA
[ENA]
¢þ
>WENV182815325
OJYQ01001341
[OJYQ] human gut metagenome; human gut
532
447
-
Ser
GGA
[ENA]
¢þ
>WENV182815351
OJYQ01002678
[OJYQ] human gut metagenome; human gut
549
621
+
Ala
TGC
[ENA]
¢þ
>WENV182815350
OJYQ01002610
[OJYQ] human gut metagenome; human gut
564
638
+
Gly
GCC
[ENA]
¢þ
>WENV182815316
OJYQ01000664
[OJYQ] human gut metagenome; human gut
571
496
-
Arg
TCT
[ENA]
¢þ
>WENV182815332
OJYQ01001756
[OJYQ] human gut metagenome; human gut
603
694
+
Ile
TAT
[ENA]
¢þ
>WENV182815336
OJYQ01001800
[OJYQ] human gut metagenome; human gut
611
682
+
Gly
TCC
[ENA]
¢þ
>WENV182815269
OJYQ01000028
[OJYQ] human gut metagenome; human gut
645
572
-
Lys
CTT
[ENA]
¢þ
>WENV182815324
OJYQ01001323
[OJYQ] human gut metagenome; human gut
648
721
+
Gly
TCC
[ENA]
¢þ
>WENV182815340
OJYQ01002149
[OJYQ] human gut metagenome; human gut
706
790
+
Leu
CAG
[ENA]
¢þ
>WENV182815333
OJYQ01001756
[OJYQ] human gut metagenome; human gut
711
794
+
Leu
TAA
[ENA]
¢þ
>WENV182815339
OJYQ01002023
[OJYQ] human gut metagenome; human gut
716
791
+
Ala
CGC
[ENA]
¢þ
>WENV182815330
OJYQ01001736
[OJYQ] human gut metagenome; human gut
811
736
-
Ala
TGC
[ENA]
¢þ
>WENV182815342
OJYQ01002265
[OJYQ] human gut metagenome; human gut
814
731
-
Leu
CAG
[ENA]
¢þ
>WENV182815329
OJYQ01001527
[OJYQ] human gut metagenome; human gut
838
910
+
Gln
TTG
[ENA]
¢þ
>WENV182815314
OJYQ01000619
[OJYQ] human gut metagenome; human gut
872
799
-
Thr
CGT
[ENA]
¢þ
>WENV182815317
OJYQ01000694
[OJYQ] human gut metagenome; human gut
912
836
-
Pro
CGG
[ENA]
¢þ
>WENV182815321
OJYQ01001022
[OJYQ] human gut metagenome; human gut
1017
943
-
Lys
TTT
[ENA]
¢þ
>WENV182815327
OJYQ01001466
[OJYQ] human gut metagenome; human gut
1032
959
-
Gly
CCC
[ENA]
¢þ
>WENV182815322
OJYQ01001152
[OJYQ] human gut metagenome; human gut
1077
1150
+
Arg
CCT
[ENA]
¢þ
>WENV182815319
OJYQ01000836
[OJYQ] human gut metagenome; human gut
1124
1197
+
Arg
CCG
[ENA]
¢þ
>WENV182815307
OJYQ01000252
[OJYQ] human gut metagenome; human gut
1138
1213
+
Arg
CCG
[ENA]
¢þ
>WENV182815323
OJYQ01001251
[OJYQ] human gut metagenome; human gut
1193
1117
-
Lys
CTT
[ENA]
¢þ
>WENV182815320
OJYQ01000850
[OJYQ] human gut metagenome; human gut
1600
1526
-
Leu
TAA
[ENA]
¢þ
>WENV182815311
OJYQ01000534
[OJYQ] human gut metagenome; human gut
1604
1685
+
Tyr
GTA
[ENA]
¢þ
>WENV182815308
OJYQ01000269
[OJYQ] human gut metagenome; human gut
1699
1774
+
Thr
TGT
[ENA]
¢þ
>WENV182815306
OJYQ01000202
[OJYQ] human gut metagenome; human gut
1811
1738
-
Arg
ACG
[ENA]
¢þ
>WENV182815312
OJYQ01000534
[OJYQ] human gut metagenome; human gut
1890
1963
+
Thr
GGT
[ENA]
¢þ
>WENV182815313
OJYQ01000534
[OJYQ] human gut metagenome; human gut
2026
2100
+
Met
CAT
[ENA]
¢þ
>WENV182815305
OJYQ01000202
[OJYQ] human gut metagenome; human gut
2110
2020
-
Ser
GCT
[ENA]
¢þ
>WENV182815309
OJYQ01000325
[OJYQ] human gut metagenome; human gut
2385
2302
-
Leu
TAG
[ENA]
¢þ
>WENV182815300
OJYQ01000133
[OJYQ] human gut metagenome; human gut
4144
4217
+
Arg
CCG
[ENA]
¢þ
>WENV182815271
OJYQ01000043
[OJYQ] human gut metagenome; human gut
4428
4339
-
Ser
CGA
[ENA]
¢þ
>WENV182815302
OJYQ01000148
[OJYQ] human gut metagenome; human gut
7375
7302
-
Glu
TTC
[ENA]
¢þ
>WENV182815301
OJYQ01000148
[OJYQ] human gut metagenome; human gut
7478
7389
-
Ser
GCT
[ENA]
¢þ
>WENV182815257
OJYQ01000010
[OJYQ] human gut metagenome; human gut
7524
7449
-
Met
CAT
[ENA]
¢þ
>WENV182815256
OJYQ01000010
[OJYQ] human gut metagenome; human gut
7630
7557
-
Thr
GGT
[ENA]
¢þ
>WENV182815255
OJYQ01000010
[OJYQ] human gut metagenome; human gut
7828
7746
-
Tyr
GTA
[ENA]
¢þ
>WENV182815284
OJYQ01000085
[OJYQ] human gut metagenome; human gut
9143
9225
+
Tyr
GTA
[ENA]
¢þ
>WENV182815285
OJYQ01000085
[OJYQ] human gut metagenome; human gut
9234
9307
+
Gln
TTG
[ENA]
¢þ
>WENV182815286
OJYQ01000097
[OJYQ] human gut metagenome; human gut
9288
9369
+
Leu
TAG
[ENA]
¢þ
>WENV182815299
OJYQ01000128
[OJYQ] human gut metagenome; human gut
9522
9609
+
Leu
CAG
[ENA]
¢þ
>WENV182815240
OJYQ01000003
[OJYQ] human gut metagenome; human gut
9780
9705
-
Ala
GGC
[ENA]
¢þ
>WENV182815298
OJYQ01000116
[OJYQ] human gut metagenome; human gut
10533
10448
-
Leu
CAA
[ENA]
¢þ
>WENV182815297
OJYQ01000116
[OJYQ] human gut metagenome; human gut
10616
10546
-
Cys
GCA
[ENA]
¢þ
>WENV182815296
OJYQ01000116
[OJYQ] human gut metagenome; human gut
10714
10641
-
Gln
TTG
[ENA]
¢þ
>WENV182815295
OJYQ01000116
[OJYQ] human gut metagenome; human gut
10800
10727
-
His
GTG
[ENA]
¢þ
>WENV182815294
OJYQ01000116
[OJYQ] human gut metagenome; human gut
10910
10837
-
Trp
CCA
[ENA]
¢þ
>WENV182815293
OJYQ01000116
[OJYQ] human gut metagenome; human gut
10996
10914
-
Tyr
GTA
[ENA]
¢þ
>WENV182815292
OJYQ01000116
[OJYQ] human gut metagenome; human gut
11073
11001
-
Phe
GAA
[ENA]
¢þ
>WENV182815291
OJYQ01000116
[OJYQ] human gut metagenome; human gut
11194
11119
-
Asp
GTC
[ENA]
¢þ
>WENV182815290
OJYQ01000116
[OJYQ] human gut metagenome; human gut
11278
11204
-
Val
TAC
[ENA]
¢þ
>WENV182815289
OJYQ01000116
[OJYQ] human gut metagenome; human gut
11377
11304
-
Glu
TTC
[ENA]
¢þ
>WENV182815288
OJYQ01000116
[OJYQ] human gut metagenome; human gut
11483
11393
-
Ser
GGA
[ENA]
¢þ
>WENV182815287
OJYQ01000110
[OJYQ] human gut metagenome; human gut
12322
12249
-
Pro
TGG
[ENA]
¢þ
>WENV182815276
OJYQ01000062
[OJYQ] human gut metagenome; human gut
13940
13863
-
His
GTG
[ENA]
¢þ
>WENV182815262
OJYQ01000015
[OJYQ] human gut metagenome; human gut
15455
15528
+
Arg
ACG
[ENA]
¢þ
>WENV182815252
OJYQ01000007
[OJYQ] human gut metagenome; human gut
17913
17827
-
Leu
GAG
[ENA]
¢þ
>WENV182815282
OJYQ01000076
[OJYQ] human gut metagenome; human gut
18384
18471
+
Ser
TGA
[ENA]
¢þ
>WENV182815283
OJYQ01000076
[OJYQ] human gut metagenome; human gut
18621
18710
+
Ser
GCT
[ENA]
¢þ
>WENV182815268
OJYQ01000028
[OJYQ] human gut metagenome; human gut
19805
19732
-
Arg
TCT
[ENA]
¢þ
>WENV182815281
OJYQ01000071
[OJYQ] human gut metagenome; human gut
20145
20218
+
Lys
CTT
[ENA]
¢þ
>WENV182815277
OJYQ01000063
[OJYQ] human gut metagenome; human gut
21587
21513
-
Leu
TAA
[ENA]
¢þ
>WENV182815265
OJYQ01000019
[OJYQ] human gut metagenome; human gut
21793
21718
-
Arg
CCT
[ENA]
¢þ
>WENV182815259
OJYQ01000012
[OJYQ] human gut metagenome; human gut
23191
23106
-
Ser
GGA
[ENA]
¢þ
>WENV182815278
OJYQ01000064
[OJYQ] human gut metagenome; human gut
23222
23294
+
Gln
CTG
[ENA]
¢þ
>WENV182815279
OJYQ01000064
[OJYQ] human gut metagenome; human gut
23328
23401
+
Glu
CTC
[ENA]
¢þ
>WENV182815280
OJYQ01000064
[OJYQ] human gut metagenome; human gut
23424
23497
+
Glu
CTC
[ENA]
¢þ
>WENV182815275
OJYQ01000050
[OJYQ] human gut metagenome; human gut
30039
30111
+
Thr
GGT
[ENA]
¢þ
>WENV182815249
OJYQ01000006
[OJYQ] human gut metagenome; human gut
32236
32161
-
Ile2
CAT
[ENA]
¢þ
>WENV182815248
OJYQ01000006
[OJYQ] human gut metagenome; human gut
32953
32881
-
Asn
GTT
[ENA]
¢þ
>WENV182815274
OJYQ01000047
[OJYQ] human gut metagenome; human gut
33077
33003
-
Val
CAC
[ENA]
¢þ
>WENV182815273
OJYQ01000047
[OJYQ] human gut metagenome; human gut
33149
33078
-
Cys
GCA
[ENA]
¢þ
>WENV182815272
OJYQ01000047
[OJYQ] human gut metagenome; human gut
33238
33165
-
Gly
GCC
[ENA]
¢þ
>WENV182815261
OJYQ01000014
[OJYQ] human gut metagenome; human gut
34797
34723
-
fMet
CAT
[ENA]
¢þ
>WENV182815270
OJYQ01000043
[OJYQ] human gut metagenome; human gut
36043
35968
-
Asn
GTT
[ENA]
¢þ
>WENV182815251
OJYQ01000007
[OJYQ] human gut metagenome; human gut
40211
40137
-
Leu
CAA
[ENA]
¢þ
>WENV182815243
OJYQ01000004
[OJYQ] human gut metagenome; human gut
40733
40658
-
Ala
CGC
[ENA]
¢þ
>WENV182815267
OJYQ01000025
[OJYQ] human gut metagenome; human gut
51487
51573
+
Leu
GAG
[ENA]
¢þ
>WENV182815263
OJYQ01000018
[OJYQ] human gut metagenome; human gut
51640
51569
-
Gln
TTG
[ENA]
¢þ
>WENV182815254
OJYQ01000009
[OJYQ] human gut metagenome; human gut
56229
56155
-
Thr
CGT
[ENA]
¢þ
>WENV182815266
OJYQ01000021
[OJYQ] human gut metagenome; human gut
56563
56635
+
Thr
CGT
[ENA]
¢þ
>WENV182815239
OJYQ01000002
[OJYQ] human gut metagenome; human gut
61596
61671
+
Val
TAC
[ENA]
¢þ
>WENV182815264
OJYQ01000019
[OJYQ] human gut metagenome; human gut
71134
71209
+
Arg
TCT
[ENA]
¢þ
>WENV182815253
OJYQ01000009
[OJYQ] human gut metagenome; human gut
74497
74409
-
Ser
CGA
[ENA]
¢þ
>WENV182815258
OJYQ01000012
[OJYQ] human gut metagenome; human gut
89413
89489
+
Pro
CGG
[ENA]
¢þ
>WENV182815250
OJYQ01000007
[OJYQ] human gut metagenome; human gut
96980
97054
+
Pro
GGG
[ENA]
¢þ
>WENV182815245
OJYQ01000005
[OJYQ] human gut metagenome; human gut
103373
103446
+
Arg
CCG
[ENA]
¢þ
>WENV182815241
OJYQ01000004
[OJYQ] human gut metagenome; human gut
106261
106336
+
Thr
TGT
[ENA]
¢þ
>WENV182815247
OJYQ01000006
[OJYQ] human gut metagenome; human gut
120942
120866
-
Pro
TGG
[ENA]
¢þ
>WENV182815246
OJYQ01000006
[OJYQ] human gut metagenome; human gut
121113
121186
+
Gly
TCC
[ENA]
¢þ
>WENV182815237
OJYQ01000001
[OJYQ] human gut metagenome; human gut
126975
127049
+
Ile
GAT
[ENA]
¢þ
>WENV182815238
OJYQ01000001
[OJYQ] human gut metagenome; human gut
127313
127388
+
Ala
TGC
[ENA]
¢þ
>WENV182815242
OJYQ01000004
[OJYQ] human gut metagenome; human gut
141780
141853
+
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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