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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
|
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HOW TO USE
tRNA gene List
[OJYW] human gut metagenome; human gut
HIT:
34 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182816055
OJYW01000003
[OJYW] human gut metagenome; human gut
102
176
+
Gly
TCC
[ENA]
¢þ
>WENV182816086
OJYW01002938
[OJYW] human gut metagenome; human gut
137
210
+
Gly
CCC
[ENA]
¢þ
>WENV182816082
OJYW01000823
[OJYW] human gut metagenome; human gut
205
281
+
Arg
ACG
[ENA]
¢þ
>WENV182816081
OJYW01000765
[OJYW] human gut metagenome; human gut
270
195
-
Lys
TTT
[ENA]
¢þ
>WENV182816076
OJYW01000695
[OJYW] human gut metagenome; human gut
316
240
-
Val
GAC
[ENA]
¢þ
>WENV182816080
OJYW01000765
[OJYW] human gut metagenome; human gut
349
274
-
Val
TAC
[ENA]
¢þ
>WENV182816087
OJYW01003187
[OJYW] human gut metagenome; human gut
352
441
+
Ser
CGA
[ENA]
¢þ
>WENV182816088
OJYW01003264
[OJYW] human gut metagenome; human gut
363
276
-
Ser
TGA
[ENA]
¢þ
>WENV182816064
OJYW01000173
[OJYW] human gut metagenome; human gut
554
628
+
Asn
GTT
[ENA]
¢þ
>WENV182816065
OJYW01000173
[OJYW] human gut metagenome; human gut
634
710
+
Arg
TCT
[ENA]
¢þ
>WENV182816085
OJYW01002273
[OJYW] human gut metagenome; human gut
674
580
-
SeC
TCA
[ENA]
¢þ
>WENV182816083
OJYW01000982
[OJYW] human gut metagenome; human gut
731
818
+
Ser
GGA
[ENA]
¢þ
>WENV182816069
OJYW01000385
[OJYW] human gut metagenome; human gut
738
814
+
Met
CAT
[ENA]
¢þ
>WENV182816070
OJYW01000385
[OJYW] human gut metagenome; human gut
823
907
+
Leu
TAG
[ENA]
¢þ
>WENV182816075
OJYW01000669
[OJYW] human gut metagenome; human gut
845
921
+
fMet
CAT
[ENA]
¢þ
>WENV182816084
OJYW01001725
[OJYW] human gut metagenome; human gut
850
774
-
Pro
TGG
[ENA]
¢þ
>WENV182816079
OJYW01000744
[OJYW] human gut metagenome; human gut
891
816
-
Asn
GTT
[ENA]
¢þ
>WENV182816073
OJYW01000472
[OJYW] human gut metagenome; human gut
897
822
-
Phe
GAA
[ENA]
¢þ
>WENV182816071
OJYW01000385
[OJYW] human gut metagenome; human gut
931
1005
+
Gln
TTG
[ENA]
¢þ
>WENV182816072
OJYW01000385
[OJYW] human gut metagenome; human gut
1042
1116
+
Gln
CTG
[ENA]
¢þ
>WENV182816062
OJYW01000163
[OJYW] human gut metagenome; human gut
1108
1183
+
Ala
GGC
[ENA]
¢þ
>WENV182816074
OJYW01000506
[OJYW] human gut metagenome; human gut
1212
1296
+
Leu
CAA
[ENA]
¢þ
>WENV182816078
OJYW01000718
[OJYW] human gut metagenome; human gut
1336
1261
-
Trp
CCA
[ENA]
¢þ
>WENV182816059
OJYW01000031
[OJYW] human gut metagenome; human gut
1361
1437
+
Pro
CGG
[ENA]
¢þ
>WENV182816063
OJYW01000165
[OJYW] human gut metagenome; human gut
1376
1451
+
Ile2
CAT
[ENA]
¢þ
>WENV182816077
OJYW01000718
[OJYW] human gut metagenome; human gut
1466
1390
-
Asp
GTC
[ENA]
¢þ
>WENV182816061
OJYW01000058
[OJYW] human gut metagenome; human gut
1640
1726
+
Leu
CAG
[ENA]
¢þ
>WENV182816066
OJYW01000213
[OJYW] human gut metagenome; human gut
1700
1624
-
Arg
TCT
[ENA]
¢þ
>WENV182816060
OJYW01000040
[OJYW] human gut metagenome; human gut
1775
1850
+
Glu
TTC
[ENA]
¢þ
>WENV182816068
OJYW01000366
[OJYW] human gut metagenome; human gut
2107
2183
+
Arg
CCG
[ENA]
¢þ
>WENV182816067
OJYW01000252
[OJYW] human gut metagenome; human gut
2394
2319
-
Gly
GCC
[ENA]
¢þ
>WENV182816058
OJYW01000028
[OJYW] human gut metagenome; human gut
3749
3674
-
Thr
GGT
[ENA]
¢þ
>WENV182816057
OJYW01000028
[OJYW] human gut metagenome; human gut
4029
3945
-
Tyr
GTA
[ENA]
¢þ
>WENV182816056
OJYW01000028
[OJYW] human gut metagenome; human gut
4115
4040
-
Thr
TGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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