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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OJZJ] human gut metagenome; human gut
HIT:
55 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182817200
OJZJ01001828
[OJZJ] human gut metagenome; human gut
30
105
+
Thr
TGT
[ENA]
¢þ
>WENV182817223
OJZJ01004359
[OJZJ] human gut metagenome; human gut
74
1
-
Glu
TTC
[ENA]
¢þ
>WENV182817215
OJZJ01003455
[OJZJ] human gut metagenome; human gut
102
175
+
Cys
GCA
[ENA]
¢þ
>WENV182817211
OJZJ01002902
[OJZJ] human gut metagenome; human gut
108
184
+
Val
GAC
[ENA]
¢þ
>WENV182817201
OJZJ01001828
[OJZJ] human gut metagenome; human gut
110
181
+
Gly
GCC
[ENA]
¢þ
>WENV182817226
OJZJ01005074
[OJZJ] human gut metagenome; human gut
127
52
-
Val
TAC
[ENA]
¢þ
>WENV182817222
OJZJ01004359
[OJZJ] human gut metagenome; human gut
161
88
-
Ile
GAT
[ENA]
¢þ
>WENV182817216
OJZJ01003455
[OJZJ] human gut metagenome; human gut
187
273
+
Leu
TAA
[ENA]
¢þ
>WENV182817212
OJZJ01002902
[OJZJ] human gut metagenome; human gut
189
265
+
Val
GAC
[ENA]
¢þ
>WENV182817217
OJZJ01003651
[OJZJ] human gut metagenome; human gut
197
126
-
Trp
CCA
[ENA]
¢þ
>WENV182817202
OJZJ01001828
[OJZJ] human gut metagenome; human gut
197
282
+
Leu
TAA
[ENA]
¢þ
>WENV182817205
OJZJ01001867
[OJZJ] human gut metagenome; human gut
223
137
-
Leu
GAG
[ENA]
¢þ
>WENV182817221
OJZJ01004359
[OJZJ] human gut metagenome; human gut
245
175
-
Gly
TCC
[ENA]
¢þ
>WENV182817203
OJZJ01001828
[OJZJ] human gut metagenome; human gut
297
370
+
Arg
ACG
[ENA]
¢þ
>WENV182817220
OJZJ01004359
[OJZJ] human gut metagenome; human gut
323
247
-
Asp
GTC
[ENA]
¢þ
>WENV182817208
OJZJ01002121
[OJZJ] human gut metagenome; human gut
326
401
+
Arg
TCT
[ENA]
¢þ
>WENV182817177
OJZJ01000156
[OJZJ] human gut metagenome; human gut
330
247
-
Leu
CAA
[ENA]
¢þ
>WENV182817198
OJZJ01001190
[OJZJ] human gut metagenome; human gut
335
422
+
Ser
TGA
[ENA]
¢þ
>WENV182817213
OJZJ01003131
[OJZJ] human gut metagenome; human gut
340
264
-
Arg
TCT
[ENA]
¢þ
>WENV182817224
OJZJ01005059
[OJZJ] human gut metagenome; human gut
350
424
+
Asn
GTT
[ENA]
¢þ
>WENV182817204
OJZJ01001828
[OJZJ] human gut metagenome; human gut
382
455
+
Pro
TGG
[ENA]
¢þ
>WENV182817192
OJZJ01000716
[OJZJ] human gut metagenome; human gut
392
467
+
Phe
GAA
[ENA]
¢þ
>WENV182817227
OJZJ01005158
[OJZJ] human gut metagenome; human gut
415
501
+
Leu
GAG
[ENA]
¢þ
>WENV182817225
OJZJ01005059
[OJZJ] human gut metagenome; human gut
428
503
+
Arg
TCT
[ENA]
¢þ
>WENV182817207
OJZJ01002085
[OJZJ] human gut metagenome; human gut
431
337
-
SeC
TCA
[ENA]
¢þ
>WENV182817219
OJZJ01004359
[OJZJ] human gut metagenome; human gut
436
361
-
fMet
CAT
[ENA]
¢þ
>WENV182817209
OJZJ01002153
[OJZJ] human gut metagenome; human gut
525
598
+
Gly
CCC
[ENA]
¢þ
>WENV182817214
OJZJ01003407
[OJZJ] human gut metagenome; human gut
532
607
+
Thr
CGT
[ENA]
¢þ
>WENV182817218
OJZJ01004359
[OJZJ] human gut metagenome; human gut
558
469
-
Ser
TGA
[ENA]
¢þ
>WENV182817210
OJZJ01002586
[OJZJ] human gut metagenome; human gut
670
745
+
Ala
TGC
[ENA]
¢þ
>WENV182817199
OJZJ01001774
[OJZJ] human gut metagenome; human gut
681
765
+
Tyr
GTA
[ENA]
¢þ
>WENV182817206
OJZJ01001881
[OJZJ] human gut metagenome; human gut
735
810
+
Ile2
CAT
[ENA]
¢þ
>WENV182817196
OJZJ01001090
[OJZJ] human gut metagenome; human gut
749
673
-
Pro
TGG
[ENA]
¢þ
>WENV182817186
OJZJ01000356
[OJZJ] human gut metagenome; human gut
777
690
-
Ser
GGA
[ENA]
¢þ
>WENV182817195
OJZJ01000743
[OJZJ] human gut metagenome; human gut
782
696
-
Leu
CAG
[ENA]
¢þ
>WENV182817187
OJZJ01000443
[OJZJ] human gut metagenome; human gut
854
779
-
Gly
GCC
[ENA]
¢þ
>WENV182817176
OJZJ01000120
[OJZJ] human gut metagenome; human gut
861
936
+
Glu
TTC
[ENA]
¢þ
>WENV182817194
OJZJ01000743
[OJZJ] human gut metagenome; human gut
880
805
-
His
GTG
[ENA]
¢þ
>WENV182817197
OJZJ01001112
[OJZJ] human gut metagenome; human gut
941
865
-
Pro
GGG
[ENA]
¢þ
>WENV182817188
OJZJ01000557
[OJZJ] human gut metagenome; human gut
957
1033
+
Asp
GTC
[ENA]
¢þ
>WENV182817193
OJZJ01000743
[OJZJ] human gut metagenome; human gut
1021
945
-
Arg
CCG
[ENA]
¢þ
>WENV182817191
OJZJ01000637
[OJZJ] human gut metagenome; human gut
1073
1149
+
fMet
CAT
[ENA]
¢þ
>WENV182817190
OJZJ01000625
[OJZJ] human gut metagenome; human gut
1318
1243
-
Lys
TTT
[ENA]
¢þ
>WENV182817189
OJZJ01000625
[OJZJ] human gut metagenome; human gut
1398
1323
-
Val
TAC
[ENA]
¢þ
>WENV182817174
OJZJ01000097
[OJZJ] human gut metagenome; human gut
1882
1806
-
Arg
ACG
[ENA]
¢þ
>WENV182817175
OJZJ01000099
[OJZJ] human gut metagenome; human gut
1890
1815
-
Asn
GTT
[ENA]
¢þ
>WENV182817173
OJZJ01000097
[OJZJ] human gut metagenome; human gut
1979
1887
-
Ser
GCT
[ENA]
¢þ
>WENV182817183
OJZJ01000244
[OJZJ] human gut metagenome; human gut
2107
2183
+
Met
CAT
[ENA]
¢þ
>WENV182817178
OJZJ01000191
[OJZJ] human gut metagenome; human gut
2118
2192
+
Val
TAC
[ENA]
¢þ
>WENV182817184
OJZJ01000244
[OJZJ] human gut metagenome; human gut
2192
2276
+
Leu
TAG
[ENA]
¢þ
>WENV182817179
OJZJ01000191
[OJZJ] human gut metagenome; human gut
2202
2277
+
Asp
GTC
[ENA]
¢þ
>WENV182817185
OJZJ01000244
[OJZJ] human gut metagenome; human gut
2300
2374
+
Gln
TTG
[ENA]
¢þ
>WENV182817180
OJZJ01000191
[OJZJ] human gut metagenome; human gut
2323
2395
+
Phe
GAA
[ENA]
¢þ
>WENV182817181
OJZJ01000191
[OJZJ] human gut metagenome; human gut
2400
2482
+
Tyr
GTA
[ENA]
¢þ
>WENV182817182
OJZJ01000191
[OJZJ] human gut metagenome; human gut
2490
2563
+
Gln
TTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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