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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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|
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HOW TO USE
tRNA gene List
[OJZT] human gut metagenome; human gut
HIT:
36 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182818441
OJZT01003631
[OJZT] human gut metagenome; human gut
63
147
+
Tyr
GTA
[ENA]
¢þ
>WENV182818431
OJZT01001075
[OJZT] human gut metagenome; human gut
70
146
+
Met
CAT
[ENA]
¢þ
>WENV182818432
OJZT01001075
[OJZT] human gut metagenome; human gut
156
240
+
Leu
TAG
[ENA]
¢þ
>WENV182818437
OJZT01001945
[OJZT] human gut metagenome; human gut
187
111
-
Val
GAC
[ENA]
¢þ
>WENV182818440
OJZT01002519
[OJZT] human gut metagenome; human gut
219
308
+
Ser
CGA
[ENA]
¢þ
>WENV182818433
OJZT01001075
[OJZT] human gut metagenome; human gut
264
338
+
Gln
TTG
[ENA]
¢þ
>WENV182818439
OJZT01002400
[OJZT] human gut metagenome; human gut
307
391
+
Leu
CAA
[ENA]
¢þ
>WENV182818442
OJZT01004086
[OJZT] human gut metagenome; human gut
324
251
-
Gly
CCC
[ENA]
¢þ
>WENV182818434
OJZT01001075
[OJZT] human gut metagenome; human gut
373
447
+
Gln
CTG
[ENA]
¢þ
>WENV182818435
OJZT01001196
[OJZT] human gut metagenome; human gut
538
464
-
Arg
CCT
[ENA]
¢þ
>WENV182818425
OJZT01000530
[OJZT] human gut metagenome; human gut
567
491
-
fMet
CAT
[ENA]
¢þ
>WENV182818411
OJZT01000046
[OJZT] human gut metagenome; human gut
639
715
+
Asp
GTC
[ENA]
¢þ
>WENV182818410
OJZT01000032
[OJZT] human gut metagenome; human gut
657
563
-
SeC
TCA
[ENA]
¢þ
>WENV182818412
OJZT01000046
[OJZT] human gut metagenome; human gut
724
799
+
Trp
CCA
[ENA]
¢þ
>WENV182818436
OJZT01001631
[OJZT] human gut metagenome; human gut
740
665
-
Ala
GGC
[ENA]
¢þ
>WENV182818426
OJZT01000702
[OJZT] human gut metagenome; human gut
841
916
+
Val
TAC
[ENA]
¢þ
>WENV182818438
OJZT01001973
[OJZT] human gut metagenome; human gut
869
793
-
Arg
TCT
[ENA]
¢þ
>WENV182818428
OJZT01000927
[OJZT] human gut metagenome; human gut
871
963
+
Ser
GCT
[ENA]
¢þ
>WENV182818427
OJZT01000702
[OJZT] human gut metagenome; human gut
920
995
+
Lys
TTT
[ENA]
¢þ
>WENV182818429
OJZT01000927
[OJZT] human gut metagenome; human gut
967
1043
+
Arg
ACG
[ENA]
¢þ
>WENV182818430
OJZT01001052
[OJZT] human gut metagenome; human gut
1111
1024
-
Ser
GGA
[ENA]
¢þ
>WENV182818424
OJZT01000404
[OJZT] human gut metagenome; human gut
1115
1040
-
Asn
GTT
[ENA]
¢þ
>WENV182818416
OJZT01000053
[OJZT] human gut metagenome; human gut
1509
1434
-
Phe
GAA
[ENA]
¢þ
>WENV182818421
OJZT01000230
[OJZT] human gut metagenome; human gut
1528
1603
+
Gly
GCC
[ENA]
¢þ
>WENV182818422
OJZT01000230
[OJZT] human gut metagenome; human gut
1644
1717
+
Cys
GCA
[ENA]
¢þ
>WENV182818423
OJZT01000230
[OJZT] human gut metagenome; human gut
1731
1817
+
Leu
TAA
[ENA]
¢þ
>WENV182818407
OJZT01000023
[OJZT] human gut metagenome; human gut
1944
2020
+
Pro
CGG
[ENA]
¢þ
>WENV182818420
OJZT01000209
[OJZT] human gut metagenome; human gut
2033
2119
+
Leu
GAG
[ENA]
¢þ
>WENV182818409
OJZT01000031
[OJZT] human gut metagenome; human gut
2220
2145
-
Glu
TTC
[ENA]
¢þ
>WENV182818415
OJZT01000052
[OJZT] human gut metagenome; human gut
2429
2343
-
Leu
CAG
[ENA]
¢þ
>WENV182818414
OJZT01000052
[OJZT] human gut metagenome; human gut
2525
2450
-
His
GTG
[ENA]
¢þ
>WENV182818419
OJZT01000106
[OJZT] human gut metagenome; human gut
2628
2553
-
Thr
GGT
[ENA]
¢þ
>WENV182818413
OJZT01000052
[OJZT] human gut metagenome; human gut
2660
2584
-
Arg
CCG
[ENA]
¢þ
>WENV182818418
OJZT01000106
[OJZT] human gut metagenome; human gut
2709
2635
-
Gly
TCC
[ENA]
¢þ
>WENV182818417
OJZT01000106
[OJZT] human gut metagenome; human gut
2788
2713
-
Thr
TGT
[ENA]
¢þ
>WENV182818408
OJZT01000025
[OJZT] human gut metagenome; human gut
4459
4384
-
Ile2
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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