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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OJZV] human gut metagenome; human gut
HIT:
39 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182818539
OJZV01001462
[OJZV] human gut metagenome; human gut
8
94
+
Leu
GAG
[ENA]
¢þ
>WENV182818533
OJZV01000797
[OJZV] human gut metagenome; human gut
12
88
+
Val
GAC
[ENA]
¢þ
>WENV182818534
OJZV01000797
[OJZV] human gut metagenome; human gut
93
169
+
Val
GAC
[ENA]
¢þ
>WENV182818536
OJZV01001103
[OJZV] human gut metagenome; human gut
120
47
-
Gly
CCC
[ENA]
¢þ
>WENV182818537
OJZV01001261
[OJZV] human gut metagenome; human gut
123
49
-
Arg
CCT
[ENA]
¢þ
>WENV182818505
OJZV01000018
[OJZV] human gut metagenome; human gut
140
65
-
Ile2
CAT
[ENA]
¢þ
>WENV182818529
OJZV01000635
[OJZV] human gut metagenome; human gut
151
57
-
SeC
TCA
[ENA]
¢þ
>WENV182818518
OJZV01000284
[OJZV] human gut metagenome; human gut
354
278
-
fMet
CAT
[ENA]
¢þ
>WENV182818508
OJZV01000148
[OJZV] human gut metagenome; human gut
409
334
-
Thr
CGT
[ENA]
¢þ
>WENV182818540
OJZV01001550
[OJZV] human gut metagenome; human gut
417
492
+
Thr
TGT
[ENA]
¢þ
>WENV182818541
OJZV01001550
[OJZV] human gut metagenome; human gut
501
585
+
Tyr
GTA
[ENA]
¢þ
>WENV182818538
OJZV01001373
[OJZV] human gut metagenome; human gut
719
644
-
Trp
CCA
[ENA]
¢þ
>WENV182818535
OJZV01000993
[OJZV] human gut metagenome; human gut
774
850
+
Arg
TCT
[ENA]
¢þ
>WENV182818522
OJZV01000398
[OJZV] human gut metagenome; human gut
1018
1093
+
Gly
GCC
[ENA]
¢þ
>WENV182818512
OJZV01000228
[OJZV] human gut metagenome; human gut
1041
966
-
Lys
TTT
[ENA]
¢þ
>WENV182818513
OJZV01000230
[OJZV] human gut metagenome; human gut
1092
1017
-
Glu
TTC
[ENA]
¢þ
>WENV182818511
OJZV01000228
[OJZV] human gut metagenome; human gut
1121
1046
-
Val
TAC
[ENA]
¢þ
>WENV182818523
OJZV01000398
[OJZV] human gut metagenome; human gut
1147
1220
+
Cys
GCA
[ENA]
¢þ
>WENV182818531
OJZV01000637
[OJZV] human gut metagenome; human gut
1196
1121
-
Asn
GTT
[ENA]
¢þ
>WENV182818514
OJZV01000255
[OJZV] human gut metagenome; human gut
1217
1293
+
Arg
CCG
[ENA]
¢þ
>WENV182818527
OJZV01000588
[OJZV] human gut metagenome; human gut
1260
1352
+
Ser
GCT
[ENA]
¢þ
>WENV182818515
OJZV01000255
[OJZV] human gut metagenome; human gut
1352
1427
+
His
GTG
[ENA]
¢þ
>WENV182818528
OJZV01000588
[OJZV] human gut metagenome; human gut
1356
1432
+
Arg
ACG
[ENA]
¢þ
>WENV182818516
OJZV01000255
[OJZV] human gut metagenome; human gut
1448
1534
+
Leu
CAG
[ENA]
¢þ
>WENV182818521
OJZV01000311
[OJZV] human gut metagenome; human gut
1525
1449
-
Asp
GTC
[ENA]
¢þ
>WENV182818525
OJZV01000507
[OJZV] human gut metagenome; human gut
1538
1454
-
Tyr
GTA
[ENA]
¢þ
>WENV182818517
OJZV01000255
[OJZV] human gut metagenome; human gut
1577
1653
+
Pro
TGG
[ENA]
¢þ
>WENV182818532
OJZV01000649
[OJZV] human gut metagenome; human gut
1725
1809
+
Leu
CAA
[ENA]
¢þ
>WENV182818520
OJZV01000293
[OJZV] human gut metagenome; human gut
1726
1813
+
Ser
GGA
[ENA]
¢þ
>WENV182818524
OJZV01000415
[OJZV] human gut metagenome; human gut
1776
1851
+
Gly
GCC
[ENA]
¢þ
>WENV182818530
OJZV01000637
[OJZV] human gut metagenome; human gut
2188
2277
+
Ser
CGA
[ENA]
¢þ
>WENV182818507
OJZV01000079
[OJZV] human gut metagenome; human gut
2367
2291
-
Pro
GGG
[ENA]
¢þ
>WENV182818526
OJZV01000527
[OJZV] human gut metagenome; human gut
2867
2780
-
Ser
TGA
[ENA]
¢þ
>WENV182818503
OJZV01000012
[OJZV] human gut metagenome; human gut
3451
3527
+
Met
CAT
[ENA]
¢þ
>WENV182818506
OJZV01000061
[OJZV] human gut metagenome; human gut
3463
3539
+
Pro
CGG
[ENA]
¢þ
>WENV182818504
OJZV01000012
[OJZV] human gut metagenome; human gut
3576
3650
+
Gln
CTG
[ENA]
¢þ
>WENV182818510
OJZV01000228
[OJZV] human gut metagenome; human gut
3820
3895
+
Ala
GGC
[ENA]
¢þ
>WENV182818519
OJZV01000289
[OJZV] human gut metagenome; human gut
4060
4136
+
Arg
TCT
[ENA]
¢þ
>WENV182818509
OJZV01000161
[OJZV] human gut metagenome; human gut
5863
5938
+
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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