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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJZX] human gut metagenome; human gut
HIT:
33 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182818643
OJZX01001227
[OJZX] human gut metagenome; human gut
18
105
+
Ser
TGA
[ENA]
¢þ
>WENV182818646
OJZX01001504
[OJZX] human gut metagenome; human gut
92
165
+
Cys
GCA
[ENA]
¢þ
>WENV182818645
OJZX01001362
[OJZX] human gut metagenome; human gut
141
66
-
Thr
TGT
[ENA]
¢þ
>WENV182818649
OJZX01001789
[OJZX] human gut metagenome; human gut
176
252
+
Val
GAC
[ENA]
¢þ
>WENV182818647
OJZX01001504
[OJZX] human gut metagenome; human gut
179
265
+
Leu
TAA
[ENA]
¢þ
>WENV182818650
OJZX01001789
[OJZX] human gut metagenome; human gut
257
333
+
Val
GAC
[ENA]
¢þ
>WENV182818648
OJZX01001713
[OJZX] human gut metagenome; human gut
370
286
-
Tyr
GTA
[ENA]
¢þ
>WENV182818653
OJZX01002216
[OJZX] human gut metagenome; human gut
472
561
+
Ser
CGA
[ENA]
¢þ
>WENV182818629
OJZX01000302
[OJZX] human gut metagenome; human gut
592
667
+
Lys
TTT
[ENA]
¢þ
>WENV182818651
OJZX01001902
[OJZX] human gut metagenome; human gut
684
759
+
Thr
CGT
[ENA]
¢þ
>WENV182818652
OJZX01002030
[OJZX] human gut metagenome; human gut
754
678
-
Pro
GGG
[ENA]
¢þ
>WENV182818637
OJZX01000692
[OJZX] human gut metagenome; human gut
781
856
+
Ile2
CAT
[ENA]
¢þ
>WENV182818634
OJZX01000485
[OJZX] human gut metagenome; human gut
1386
1310
-
Pro
TGG
[ENA]
¢þ
>WENV182818635
OJZX01000541
[OJZX] human gut metagenome; human gut
1426
1350
-
fMet
CAT
[ENA]
¢þ
>WENV182818638
OJZX01000715
[OJZX] human gut metagenome; human gut
1438
1530
+
Ser
GCT
[ENA]
¢þ
>WENV182818644
OJZX01001243
[OJZX] human gut metagenome; human gut
1480
1405
-
Asn
GTT
[ENA]
¢þ
>WENV182818641
OJZX01000953
[OJZX] human gut metagenome; human gut
1514
1430
-
Leu
CAA
[ENA]
¢þ
>WENV182818633
OJZX01000485
[OJZX] human gut metagenome; human gut
1515
1429
-
Leu
CAG
[ENA]
¢þ
>WENV182818639
OJZX01000715
[OJZX] human gut metagenome; human gut
1535
1611
+
Arg
ACG
[ENA]
¢þ
>WENV182818636
OJZX01000684
[OJZX] human gut metagenome; human gut
1591
1665
+
Arg
CCT
[ENA]
¢þ
>WENV182818632
OJZX01000485
[OJZX] human gut metagenome; human gut
1614
1539
-
His
GTG
[ENA]
¢þ
>WENV182818642
OJZX01001086
[OJZX] human gut metagenome; human gut
1692
1618
-
Gly
TCC
[ENA]
¢þ
>WENV182818631
OJZX01000485
[OJZX] human gut metagenome; human gut
1746
1670
-
Arg
CCG
[ENA]
¢þ
>WENV182818640
OJZX01000799
[OJZX] human gut metagenome; human gut
2052
1977
-
Trp
CCA
[ENA]
¢þ
>WENV182818630
OJZX01000393
[OJZX] human gut metagenome; human gut
2097
2021
-
fMet
CAT
[ENA]
¢þ
>WENV182818621
OJZX01000014
[OJZX] human gut metagenome; human gut
2489
2413
-
Pro
CGG
[ENA]
¢þ
>WENV182818626
OJZX01000097
[OJZX] human gut metagenome; human gut
2898
2812
-
Leu
GAG
[ENA]
¢þ
>WENV182818628
OJZX01000119
[OJZX] human gut metagenome; human gut
3371
3296
-
Glu
TTC
[ENA]
¢þ
>WENV182818625
OJZX01000084
[OJZX] human gut metagenome; human gut
3474
3550
+
Asp
GTC
[ENA]
¢þ
>WENV182818627
OJZX01000115
[OJZX] human gut metagenome; human gut
4880
4955
+
Phe
GAA
[ENA]
¢þ
>WENV182818624
OJZX01000060
[OJZX] human gut metagenome; human gut
5510
5604
+
SeC
TCA
[ENA]
¢þ
>WENV182818623
OJZX01000054
[OJZX] human gut metagenome; human gut
6459
6546
+
Ser
GGA
[ENA]
¢þ
>WENV182818622
OJZX01000043
[OJZX] human gut metagenome; human gut
6787
6712
-
Gly
GCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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