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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[OKAF] human gut metagenome; human gut
HIT:
145 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182819615
OKAF01000003
[OKAF] human gut metagenome; human gut
64
153
+
Ser
GCT
[ENA]
¢þ
>WENV182819727
OKAF01004682
[OKAF] human gut metagenome; human gut
66
137
+
Gln
TTG
[ENA]
¢þ
>WENV182819730
OKAF01004706
[OKAF] human gut metagenome; human gut
70
160
+
Ser
GCT
[ENA]
¢þ
>WENV182819750
OKAF01005922
[OKAF] human gut metagenome; human gut
75
2
-
Arg
ACG
[ENA]
¢þ
>WENV182819712
OKAF01002391
[OKAF] human gut metagenome; human gut
105
181
+
Asp
GTC
[ENA]
¢þ
>WENV182819753
OKAF01006140
[OKAF] human gut metagenome; human gut
118
42
-
Met
CAT
[ENA]
¢þ
>WENV182819738
OKAF01005394
[OKAF] human gut metagenome; human gut
122
213
+
Ser
GGA
[ENA]
¢þ
>WENV182819737
OKAF01005339
[OKAF] human gut metagenome; human gut
126
51
-
Thr
TGT
[ENA]
¢þ
>WENV182819666
OKAF01000436
[OKAF] human gut metagenome; human gut
140
66
-
Glu
TTC
[ENA]
¢þ
>WENV182819728
OKAF01004682
[OKAF] human gut metagenome; human gut
143
216
+
Cys
GCA
[ENA]
¢þ
>WENV182819664
OKAF01000427
[OKAF] human gut metagenome; human gut
148
75
-
fMet
CAT
[ENA]
¢þ
>WENV182819743
OKAF01005843
[OKAF] human gut metagenome; human gut
153
62
-
Ser
TGA
[ENA]
¢þ
>WENV182819758
OKAF01006648
[OKAF] human gut metagenome; human gut
163
88
-
Ile2
CAT
[ENA]
¢þ
>WENV182819616
OKAF01000003
[OKAF] human gut metagenome; human gut
167
240
+
Glu
TTC
[ENA]
¢þ
>WENV182819723
OKAF01003951
[OKAF] human gut metagenome; human gut
168
95
-
Lys
TTT
[ENA]
¢þ
>WENV182819749
OKAF01005922
[OKAF] human gut metagenome; human gut
175
90
-
Leu
TAA
[ENA]
¢þ
>WENV182819731
OKAF01004917
[OKAF] human gut metagenome; human gut
186
258
+
Val
CAC
[ENA]
¢þ
>WENV182819725
OKAF01004464
[OKAF] human gut metagenome; human gut
228
322
+
SeC
TCA
[ENA]
¢þ
>WENV182819742
OKAF01005843
[OKAF] human gut metagenome; human gut
235
162
-
Ile2
CAT
[ENA]
¢þ
>WENV182819713
OKAF01002391
[OKAF] human gut metagenome; human gut
235
310
+
Trp
CCA
[ENA]
¢þ
>WENV182819719
OKAF01003863
[OKAF] human gut metagenome; human gut
239
315
+
Ile2
CAT
[ENA]
¢þ
>WENV182819744
OKAF01005913
[OKAF] human gut metagenome; human gut
245
332
+
Leu
GAG
[ENA]
¢þ
>WENV182819752
OKAF01006140
[OKAF] human gut metagenome; human gut
248
175
-
Thr
GGT
[ENA]
¢þ
>WENV182819663
OKAF01000427
[OKAF] human gut metagenome; human gut
252
160
-
Ser
TGA
[ENA]
¢þ
>WENV182819757
OKAF01006648
[OKAF] human gut metagenome; human gut
257
182
-
Met
CAT
[ENA]
¢þ
>WENV182819748
OKAF01005922
[OKAF] human gut metagenome; human gut
262
191
-
Gly
GCC
[ENA]
¢þ
>WENV182819741
OKAF01005843
[OKAF] human gut metagenome; human gut
336
262
-
Met
CAT
[ENA]
¢þ
>WENV182819747
OKAF01005922
[OKAF] human gut metagenome; human gut
342
267
-
Thr
TGT
[ENA]
¢þ
>WENV182819756
OKAF01006648
[OKAF] human gut metagenome; human gut
352
278
-
Ala
TGC
[ENA]
¢þ
>WENV182819754
OKAF01006275
[OKAF] human gut metagenome; human gut
362
289
-
Arg
CCT
[ENA]
¢þ
>WENV182819736
OKAF01005023
[OKAF] human gut metagenome; human gut
369
295
-
Pro
CGG
[ENA]
¢þ
>WENV182819759
OKAF01006651
[OKAF] human gut metagenome; human gut
384
459
+
Arg
ACG
[ENA]
¢þ
>WENV182819751
OKAF01006140
[OKAF] human gut metagenome; human gut
425
343
-
Tyr
GTA
[ENA]
¢þ
>WENV182819729
OKAF01004682
[OKAF] human gut metagenome; human gut
430
513
+
Leu
CAA
[ENA]
¢þ
>WENV182819746
OKAF01005922
[OKAF] human gut metagenome; human gut
431
348
-
Leu
TAG
[ENA]
¢þ
>WENV182819740
OKAF01005843
[OKAF] human gut metagenome; human gut
436
361
-
Ala
TGC
[ENA]
¢þ
>WENV182819755
OKAF01006648
[OKAF] human gut metagenome; human gut
438
365
-
Pro
TGG
[ENA]
¢þ
>WENV182819717
OKAF01003330
[OKAF] human gut metagenome; human gut
447
374
-
Glu
CTC
[ENA]
¢þ
>WENV182819726
OKAF01004570
[OKAF] human gut metagenome; human gut
454
529
+
Arg
CCG
[ENA]
¢þ
>WENV182819724
OKAF01004135
[OKAF] human gut metagenome; human gut
455
537
+
Leu
CAA
[ENA]
¢þ
>WENV182819734
OKAF01005000
[OKAF] human gut metagenome; human gut
470
556
+
Leu
GAG
[ENA]
¢þ
>WENV182819705
OKAF01001824
[OKAF] human gut metagenome; human gut
474
549
+
Ala
GGC
[ENA]
¢þ
>WENV182819732
OKAF01004931
[OKAF] human gut metagenome; human gut
476
552
+
Ile
GAT
[ENA]
¢þ
>WENV182819745
OKAF01005922
[OKAF] human gut metagenome; human gut
520
446
-
Lys
TTT
[ENA]
¢þ
>WENV182819739
OKAF01005843
[OKAF] human gut metagenome; human gut
526
453
-
Pro
TGG
[ENA]
¢þ
>WENV182819721
OKAF01003908
[OKAF] human gut metagenome; human gut
535
463
-
Ala
TGC
[ENA]
¢þ
>WENV182819687
OKAF01000562
[OKAF] human gut metagenome; human gut
545
451
-
SeC
TCA
[ENA]
¢þ
>WENV182819733
OKAF01004931
[OKAF] human gut metagenome; human gut
573
648
+
Ala
TGC
[ENA]
¢þ
>WENV182819735
OKAF01005000
[OKAF] human gut metagenome; human gut
578
651
+
Gly
TCC
[ENA]
¢þ
>WENV182819665
OKAF01000434
[OKAF] human gut metagenome; human gut
651
578
-
Gly
CCC
[ENA]
¢þ
>WENV182819706
OKAF01001830
[OKAF] human gut metagenome; human gut
670
744
+
Asn
GTT
[ENA]
¢þ
>WENV182819651
OKAF01000193
[OKAF] human gut metagenome; human gut
689
603
-
Leu
CAG
[ENA]
¢þ
>WENV182819667
OKAF01000473
[OKAF] human gut metagenome; human gut
690
764
+
Asn
GTT
[ENA]
¢þ
>WENV182819707
OKAF01001830
[OKAF] human gut metagenome; human gut
747
837
+
Ser
GCT
[ENA]
¢þ
>WENV182819668
OKAF01000473
[OKAF] human gut metagenome; human gut
770
856
+
Leu
TAA
[ENA]
¢þ
>WENV182819650
OKAF01000193
[OKAF] human gut metagenome; human gut
808
733
-
His
GTG
[ENA]
¢þ
>WENV182819722
OKAF01003924
[OKAF] human gut metagenome; human gut
832
907
+
Thr
CGT
[ENA]
¢þ
>WENV182819669
OKAF01000473
[OKAF] human gut metagenome; human gut
871
946
+
fMet
CAT
[ENA]
¢þ
>WENV182819696
OKAF01001107
[OKAF] human gut metagenome; human gut
875
946
+
Arg
CCG
[ENA]
¢þ
>WENV182819714
OKAF01002501
[OKAF] human gut metagenome; human gut
892
967
+
Asn
GTT
[ENA]
¢þ
>WENV182819649
OKAF01000193
[OKAF] human gut metagenome; human gut
940
864
-
Arg
CCG
[ENA]
¢þ
>WENV182819670
OKAF01000473
[OKAF] human gut metagenome; human gut
954
1028
+
Glu
TTC
[ENA]
¢þ
>WENV182819720
OKAF01003907
[OKAF] human gut metagenome; human gut
961
887
-
Gln
CTG
[ENA]
¢þ
>WENV182819718
OKAF01003755
[OKAF] human gut metagenome; human gut
981
1053
+
Thr
TGT
[ENA]
¢þ
>WENV182819710
OKAF01002083
[OKAF] human gut metagenome; human gut
1023
952
-
Trp
CCA
[ENA]
¢þ
>WENV182819671
OKAF01000473
[OKAF] human gut metagenome; human gut
1038
1111
+
Gly
TCC
[ENA]
¢þ
>WENV182819711
OKAF01002144
[OKAF] human gut metagenome; human gut
1070
981
-
Ser
CGA
[ENA]
¢þ
>WENV182819672
OKAF01000473
[OKAF] human gut metagenome; human gut
1117
1192
+
Val
TAC
[ENA]
¢þ
>WENV182819704
OKAF01001657
[OKAF] human gut metagenome; human gut
1149
1074
-
Ile2
CAT
[ENA]
¢þ
>WENV182819673
OKAF01000473
[OKAF] human gut metagenome; human gut
1198
1274
+
Asp
GTC
[ENA]
¢þ
>WENV182819652
OKAF01000202
[OKAF] human gut metagenome; human gut
1280
1355
+
Asn
GTT
[ENA]
¢þ
>WENV182819674
OKAF01000473
[OKAF] human gut metagenome; human gut
1284
1358
+
Thr
TGT
[ENA]
¢þ
>WENV182819709
OKAF01001921
[OKAF] human gut metagenome; human gut
1311
1387
+
Asp
GTC
[ENA]
¢þ
>WENV182819675
OKAF01000473
[OKAF] human gut metagenome; human gut
1373
1457
+
Tyr
GTA
[ENA]
¢þ
>WENV182819716
OKAF01002791
[OKAF] human gut metagenome; human gut
1418
1494
+
Pro
GGG
[ENA]
¢þ
>WENV182819676
OKAF01000473
[OKAF] human gut metagenome; human gut
1467
1550
+
Leu
TAG
[ENA]
¢þ
>WENV182819715
OKAF01002751
[OKAF] human gut metagenome; human gut
1498
1569
+
Arg
CCT
[ENA]
¢þ
>WENV182819688
OKAF01000623
[OKAF] human gut metagenome; human gut
1506
1592
+
Leu
CAG
[ENA]
¢þ
>WENV182819702
OKAF01001445
[OKAF] human gut metagenome; human gut
1538
1463
-
Asn
GTT
[ENA]
¢þ
>WENV182819677
OKAF01000473
[OKAF] human gut metagenome; human gut
1574
1648
+
Gly
GCC
[ENA]
¢þ
>WENV182819698
OKAF01001151
[OKAF] human gut metagenome; human gut
1614
1539
-
Thr
TGT
[ENA]
¢þ
>WENV182819678
OKAF01000473
[OKAF] human gut metagenome; human gut
1673
1749
+
Arg
TCT
[ENA]
¢þ
>WENV182819679
OKAF01000473
[OKAF] human gut metagenome; human gut
1759
1834
+
Gln
TTG
[ENA]
¢þ
>WENV182819708
OKAF01001887
[OKAF] human gut metagenome; human gut
1785
1861
+
Pro
CGG
[ENA]
¢þ
>WENV182819680
OKAF01000473
[OKAF] human gut metagenome; human gut
1846
1921
+
Lys
TTT
[ENA]
¢þ
>WENV182819681
OKAF01000473
[OKAF] human gut metagenome; human gut
1924
2012
+
Ser
TGA
[ENA]
¢þ
>WENV182819703
OKAF01001496
[OKAF] human gut metagenome; human gut
1932
1856
-
Asp
GTC
[ENA]
¢þ
>WENV182819700
OKAF01001264
[OKAF] human gut metagenome; human gut
1950
2022
+
Arg
CCT
[ENA]
¢þ
>WENV182819682
OKAF01000473
[OKAF] human gut metagenome; human gut
2016
2091
+
Phe
GAA
[ENA]
¢þ
>WENV182819683
OKAF01000473
[OKAF] human gut metagenome; human gut
2098
2172
+
Met
CAT
[ENA]
¢þ
>WENV182819657
OKAF01000232
[OKAF] human gut metagenome; human gut
2183
2259
+
Asp
GTC
[ENA]
¢þ
>WENV182819684
OKAF01000473
[OKAF] human gut metagenome; human gut
2186
2262
+
Ile2
CAT
[ENA]
¢þ
>WENV182819685
OKAF01000484
[OKAF] human gut metagenome; human gut
2235
2149
-
Leu
GAG
[ENA]
¢þ
>WENV182819699
OKAF01001237
[OKAF] human gut metagenome; human gut
2390
2463
+
Gly
CCC
[ENA]
¢þ
>WENV182819691
OKAF01000868
[OKAF] human gut metagenome; human gut
2453
2364
-
Ser
GGA
[ENA]
¢þ
>WENV182819656
OKAF01000226
[OKAF] human gut metagenome; human gut
2590
2514
-
Arg
TCT
[ENA]
¢þ
>WENV182819618
OKAF01000004
[OKAF] human gut metagenome; human gut
2889
2814
-
Arg
TCT
[ENA]
¢þ
>WENV182819701
OKAF01001393
[OKAF] human gut metagenome; human gut
2967
2891
-
Pro
TGG
[ENA]
¢þ
>WENV182819697
OKAF01001138
[OKAF] human gut metagenome; human gut
3056
2981
-
Asn
GTT
[ENA]
¢þ
>WENV182819690
OKAF01000853
[OKAF] human gut metagenome; human gut
3342
3436
+
SeC
TCA
[ENA]
¢þ
>WENV182819619
OKAF01000005
[OKAF] human gut metagenome; human gut
3429
3357
-
Thr
CGT
[ENA]
¢þ
>WENV182819692
OKAF01000870
[OKAF] human gut metagenome; human gut
3475
3550
+
Gly
GCC
[ENA]
¢þ
>WENV182819689
OKAF01000851
[OKAF] human gut metagenome; human gut
3482
3558
+
Val
GAC
[ENA]
¢þ
>WENV182819693
OKAF01000870
[OKAF] human gut metagenome; human gut
3589
3662
+
Cys
GCA
[ENA]
¢þ
>WENV182819695
OKAF01001084
[OKAF] human gut metagenome; human gut
3609
3685
+
Arg
TCT
[ENA]
¢þ
>WENV182819624
OKAF01000056
[OKAF] human gut metagenome; human gut
3641
3566
-
Thr
CGT
[ENA]
¢þ
>WENV182819694
OKAF01000870
[OKAF] human gut metagenome; human gut
3676
3762
+
Leu
TAA
[ENA]
¢þ
>WENV182819655
OKAF01000209
[OKAF] human gut metagenome; human gut
3938
3863
-
Ala
GGC
[ENA]
¢þ
>WENV182819644
OKAF01000132
[OKAF] human gut metagenome; human gut
4415
4502
+
Ser
TGA
[ENA]
¢þ
>WENV182819686
OKAF01000555
[OKAF] human gut metagenome; human gut
4814
4738
-
fMet
CAT
[ENA]
¢þ
>WENV182819648
OKAF01000188
[OKAF] human gut metagenome; human gut
5126
5050
-
fMet
CAT
[ENA]
¢þ
>WENV182819659
OKAF01000359
[OKAF] human gut metagenome; human gut
5351
5435
+
Tyr
GTA
[ENA]
¢þ
>WENV182819660
OKAF01000359
[OKAF] human gut metagenome; human gut
5555
5629
+
Gly
TCC
[ENA]
¢þ
>WENV182819661
OKAF01000359
[OKAF] human gut metagenome; human gut
5635
5710
+
Thr
GGT
[ENA]
¢þ
>WENV182819646
OKAF01000148
[OKAF] human gut metagenome; human gut
5651
5577
-
Gln
CTG
[ENA]
¢þ
>WENV182819645
OKAF01000148
[OKAF] human gut metagenome; human gut
5747
5671
-
Met
CAT
[ENA]
¢þ
>WENV182819640
OKAF01000114
[OKAF] human gut metagenome; human gut
6586
6513
-
Gln
TTG
[ENA]
¢þ
>WENV182819662
OKAF01000410
[OKAF] human gut metagenome; human gut
6635
6722
+
Ser
TGA
[ENA]
¢þ
>WENV182819653
OKAF01000209
[OKAF] human gut metagenome; human gut
6647
6722
+
Val
TAC
[ENA]
¢þ
>WENV182819639
OKAF01000114
[OKAF] human gut metagenome; human gut
6676
6594
-
Tyr
GTA
[ENA]
¢þ
>WENV182819654
OKAF01000209
[OKAF] human gut metagenome; human gut
6727
6802
+
Lys
TTT
[ENA]
¢þ
>WENV182819658
OKAF01000293
[OKAF] human gut metagenome; human gut
7087
7171
+
Leu
CAA
[ENA]
¢þ
>WENV182819642
OKAF01000121
[OKAF] human gut metagenome; human gut
9254
9178
-
Arg
ACG
[ENA]
¢þ
>WENV182819641
OKAF01000121
[OKAF] human gut metagenome; human gut
9350
9258
-
Ser
GCT
[ENA]
¢þ
>WENV182819647
OKAF01000170
[OKAF] human gut metagenome; human gut
12296
12223
-
Pro
TGG
[ENA]
¢þ
>WENV182819623
OKAF01000020
[OKAF] human gut metagenome; human gut
12347
12258
-
Ser
CGA
[ENA]
¢þ
>WENV182819643
OKAF01000127
[OKAF] human gut metagenome; human gut
12635
12561
-
Arg
TCT
[ENA]
¢þ
>WENV182819626
OKAF01000072
[OKAF] human gut metagenome; human gut
15839
15914
+
Gly
GCC
[ENA]
¢þ
>WENV182819638
OKAF01000079
[OKAF] human gut metagenome; human gut
18330
18245
-
Leu
CAA
[ENA]
¢þ
>WENV182819637
OKAF01000079
[OKAF] human gut metagenome; human gut
18413
18343
-
Cys
GCA
[ENA]
¢þ
>WENV182819636
OKAF01000079
[OKAF] human gut metagenome; human gut
18511
18438
-
Gln
TTG
[ENA]
¢þ
>WENV182819635
OKAF01000079
[OKAF] human gut metagenome; human gut
18597
18524
-
His
GTG
[ENA]
¢þ
>WENV182819634
OKAF01000079
[OKAF] human gut metagenome; human gut
18707
18634
-
Trp
CCA
[ENA]
¢þ
>WENV182819633
OKAF01000079
[OKAF] human gut metagenome; human gut
18793
18711
-
Tyr
GTA
[ENA]
¢þ
>WENV182819632
OKAF01000079
[OKAF] human gut metagenome; human gut
18870
18798
-
Phe
GAA
[ENA]
¢þ
>WENV182819631
OKAF01000079
[OKAF] human gut metagenome; human gut
18991
18916
-
Asp
GTC
[ENA]
¢þ
>WENV182819625
OKAF01000065
[OKAF] human gut metagenome; human gut
19034
19120
+
Leu
GAG
[ENA]
¢þ
>WENV182819630
OKAF01000079
[OKAF] human gut metagenome; human gut
19075
19001
-
Val
TAC
[ENA]
¢þ
>WENV182819629
OKAF01000079
[OKAF] human gut metagenome; human gut
19174
19101
-
Glu
TTC
[ENA]
¢þ
>WENV182819628
OKAF01000079
[OKAF] human gut metagenome; human gut
19280
19190
-
Ser
GGA
[ENA]
¢þ
>WENV182819627
OKAF01000079
[OKAF] human gut metagenome; human gut
19397
19322
-
Asn
GTT
[ENA]
¢þ
>WENV182819621
OKAF01000018
[OKAF] human gut metagenome; human gut
30213
30285
+
Thr
GGT
[ENA]
¢þ
>WENV182819622
OKAF01000020
[OKAF] human gut metagenome; human gut
32798
32727
-
Trp
CCA
[ENA]
¢þ
>WENV182819620
OKAF01000008
[OKAF] human gut metagenome; human gut
34447
34520
+
Arg
CCG
[ENA]
¢þ
>WENV182819617
OKAF01000004
[OKAF] human gut metagenome; human gut
52228
52303
+
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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