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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[OKAG] human gut metagenome; human gut
HIT:
43 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182819790
OKAG01000477
[OKAG] human gut metagenome; human gut
38
123
+
Leu
GAG
[ENA]
¢þ
>WENV182819782
OKAG01000287
[OKAG] human gut metagenome; human gut
64
139
+
Lys
CTT
[ENA]
¢þ
>WENV182819791
OKAG01000637
[OKAG] human gut metagenome; human gut
123
48
-
Phe
GAA
[ENA]
¢þ
>WENV182819783
OKAG01000304
[OKAG] human gut metagenome; human gut
155
80
-
Lys
TTT
[ENA]
¢þ
>WENV182819769
OKAG01000073
[OKAG] human gut metagenome; human gut
248
173
-
Ala
GGC
[ENA]
¢þ
>WENV182819784
OKAG01000358
[OKAG] human gut metagenome; human gut
278
184
-
SeC
TCA
[ENA]
¢þ
>WENV182819802
OKAG01001513
[OKAG] human gut metagenome; human gut
644
573
-
Arg
CCG
[ENA]
¢þ
>WENV182819793
OKAG01001014
[OKAG] human gut metagenome; human gut
685
760
+
Thr
TGT
[ENA]
¢þ
>WENV182819800
OKAG01001141
[OKAG] human gut metagenome; human gut
728
804
+
Asp
GTC
[ENA]
¢þ
>WENV182819801
OKAG01001481
[OKAG] human gut metagenome; human gut
733
808
+
Asn
GTT
[ENA]
¢þ
>WENV182819794
OKAG01001014
[OKAG] human gut metagenome; human gut
791
875
+
Tyr
GTA
[ENA]
¢þ
>WENV182819767
OKAG01000066
[OKAG] human gut metagenome; human gut
803
711
-
Ser
TGA
[ENA]
¢þ
>WENV182819799
OKAG01001134
[OKAG] human gut metagenome; human gut
854
764
-
Ser
GGA
[ENA]
¢þ
>WENV182819795
OKAG01001014
[OKAG] human gut metagenome; human gut
917
991
+
Gly
TCC
[ENA]
¢þ
>WENV182819781
OKAG01000271
[OKAG] human gut metagenome; human gut
947
871
-
Ile2
CAT
[ENA]
¢þ
>WENV182819798
OKAG01001134
[OKAG] human gut metagenome; human gut
978
905
-
Glu
TTC
[ENA]
¢þ
>WENV182819796
OKAG01001014
[OKAG] human gut metagenome; human gut
995
1070
+
Thr
GGT
[ENA]
¢þ
>WENV182819797
OKAG01001134
[OKAG] human gut metagenome; human gut
1053
979
-
Asn
GTT
[ENA]
¢þ
>WENV182819792
OKAG01000977
[OKAG] human gut metagenome; human gut
1103
1027
-
fMet
CAT
[ENA]
¢þ
>WENV182819770
OKAG01000088
[OKAG] human gut metagenome; human gut
1185
1260
+
Val
TAC
[ENA]
¢þ
>WENV182819771
OKAG01000088
[OKAG] human gut metagenome; human gut
1267
1342
+
Thr
TGT
[ENA]
¢þ
>WENV182819772
OKAG01000088
[OKAG] human gut metagenome; human gut
1349
1424
+
Lys
TTT
[ENA]
¢þ
>WENV182819773
OKAG01000088
[OKAG] human gut metagenome; human gut
1433
1515
+
Leu
TAG
[ENA]
¢þ
>WENV182819774
OKAG01000088
[OKAG] human gut metagenome; human gut
1519
1593
+
Gly
GCC
[ENA]
¢þ
>WENV182819775
OKAG01000088
[OKAG] human gut metagenome; human gut
1605
1693
+
Leu
TAA
[ENA]
¢þ
>WENV182819785
OKAG01000460
[OKAG] human gut metagenome; human gut
1686
1759
+
fMet
CAT
[ENA]
¢þ
>WENV182819776
OKAG01000088
[OKAG] human gut metagenome; human gut
1706
1780
+
Arg
ACG
[ENA]
¢þ
>WENV182819777
OKAG01000088
[OKAG] human gut metagenome; human gut
1789
1862
+
Pro
TGG
[ENA]
¢þ
>WENV182819786
OKAG01000460
[OKAG] human gut metagenome; human gut
1863
1937
+
Phe
GAA
[ENA]
¢þ
>WENV182819778
OKAG01000088
[OKAG] human gut metagenome; human gut
1879
1954
+
Ala
TGC
[ENA]
¢þ
>WENV182819768
OKAG01000073
[OKAG] human gut metagenome; human gut
1944
2019
+
Val
TAC
[ENA]
¢þ
>WENV182819787
OKAG01000460
[OKAG] human gut metagenome; human gut
1950
2023
+
His
GTG
[ENA]
¢þ
>WENV182819788
OKAG01000460
[OKAG] human gut metagenome; human gut
2034
2105
+
Gln
TTG
[ENA]
¢þ
>WENV182819789
OKAG01000460
[OKAG] human gut metagenome; human gut
2111
2184
+
Cys
GCA
[ENA]
¢þ
>WENV182819763
OKAG01000010
[OKAG] human gut metagenome; human gut
2256
2181
-
Ala
TGC
[ENA]
¢þ
>WENV182819762
OKAG01000010
[OKAG] human gut metagenome; human gut
2386
2310
-
Ile
GAT
[ENA]
¢þ
>WENV182819779
OKAG01000192
[OKAG] human gut metagenome; human gut
3530
3619
+
Ser
GGA
[ENA]
¢þ
>WENV182819780
OKAG01000192
[OKAG] human gut metagenome; human gut
3856
3780
-
Arg
TCT
[ENA]
¢þ
>WENV182819764
OKAG01000016
[OKAG] human gut metagenome; human gut
4730
4805
+
Gly
GCC
[ENA]
¢þ
>WENV182819765
OKAG01000016
[OKAG] human gut metagenome; human gut
4813
4886
+
Cys
GCA
[ENA]
¢þ
>WENV182819766
OKAG01000016
[OKAG] human gut metagenome; human gut
4915
5001
+
Leu
TAA
[ENA]
¢þ
>WENV182819761
OKAG01000002
[OKAG] human gut metagenome; human gut
8961
8885
-
Arg
ACG
[ENA]
¢þ
>WENV182819760
OKAG01000002
[OKAG] human gut metagenome; human gut
9079
8986
-
Ser
GCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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