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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKAS] human gut metagenome; human gut
HIT:
135 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182821058
OKAS01000125
[OKAS] human gut metagenome; human gut
2
76
+
Ile2
CAT
[ENA]
¢þ
>WENV182821100
OKAS01000467
[OKAS] human gut metagenome; human gut
4
80
+
Asp
GTC
[ENA]
¢þ
>WENV182821101
OKAS01000467
[OKAS] human gut metagenome; human gut
82
152
+
Gly
TCC
[ENA]
¢þ
>WENV182821084
OKAS01000278
[OKAS] human gut metagenome; human gut
86
2
-
Leu
CAA
[ENA]
¢þ
>WENV182821102
OKAS01000467
[OKAS] human gut metagenome; human gut
166
242
+
Ile
GAT
[ENA]
¢þ
>WENV182821113
OKAS01001576
[OKAS] human gut metagenome; human gut
235
149
-
Ser
GGA
[ENA]
¢þ
>WENV182821036
OKAS01000074
[OKAS] human gut metagenome; human gut
254
180
-
Cys
GCA
[ENA]
¢þ
>WENV182821067
OKAS01000179
[OKAS] human gut metagenome; human gut
298
223
-
Pro
GGG
[ENA]
¢þ
>WENV182821097
OKAS01000365
[OKAS] human gut metagenome; human gut
377
451
+
Glu
CTC
[ENA]
¢þ
>WENV182821112
OKAS01001249
[OKAS] human gut metagenome; human gut
429
502
+
Glu
TTC
[ENA]
¢þ
>WENV182821111
OKAS01001165
[OKAS] human gut metagenome; human gut
565
478
-
Ser
CGA
[ENA]
¢þ
>WENV182821109
OKAS01000561
[OKAS] human gut metagenome; human gut
682
608
-
Ala
TGC
[ENA]
¢þ
>WENV182821108
OKAS01000561
[OKAS] human gut metagenome; human gut
773
699
-
Ile
GAT
[ENA]
¢þ
>WENV182821019
OKAS01000049
[OKAS] human gut metagenome; human gut
1179
1251
+
Glu
TTC
[ENA]
¢þ
>WENV182821063
OKAS01000154
[OKAS] human gut metagenome; human gut
1235
1161
-
Asp
GTC
[ENA]
¢þ
>WENV182821110
OKAS01000607
[OKAS] human gut metagenome; human gut
1714
1790
+
Arg
TCT
[ENA]
¢þ
>WENV182821054
OKAS01000110
[OKAS] human gut metagenome; human gut
2083
2008
-
Pro
TGG
[ENA]
¢þ
>WENV182821092
OKAS01000344
[OKAS] human gut metagenome; human gut
2246
2171
-
Asn
GTT
[ENA]
¢þ
>WENV182821107
OKAS01000546
[OKAS] human gut metagenome; human gut
2282
2357
+
Ala
TGC
[ENA]
¢þ
>WENV182821038
OKAS01000082
[OKAS] human gut metagenome; human gut
2344
2260
-
Leu
CAA
[ENA]
¢þ
>WENV182821105
OKAS01000482
[OKAS] human gut metagenome; human gut
2355
2430
+
Thr
TGT
[ENA]
¢þ
>WENV182821106
OKAS01000482
[OKAS] human gut metagenome; human gut
2434
2508
+
Gly
TCC
[ENA]
¢þ
>WENV182821041
OKAS01000087
[OKAS] human gut metagenome; human gut
2874
2802
-
Arg
CCT
[ENA]
¢þ
>WENV182821081
OKAS01000235
[OKAS] human gut metagenome; human gut
2964
3036
+
Cys
GCA
[ENA]
¢þ
>WENV182821104
OKAS01000471
[OKAS] human gut metagenome; human gut
3405
3492
+
Ser
GCT
[ENA]
¢þ
>WENV182821103
OKAS01000467
[OKAS] human gut metagenome; human gut
3533
3608
+
Asn
GTT
[ENA]
¢þ
>WENV182821069
OKAS01000182
[OKAS] human gut metagenome; human gut
3578
3502
-
Arg
ACG
[ENA]
¢þ
>WENV182821068
OKAS01000182
[OKAS] human gut metagenome; human gut
3674
3582
-
Ser
GCT
[ENA]
¢þ
>WENV182821099
OKAS01000455
[OKAS] human gut metagenome; human gut
3958
4052
+
SeC
TCA
[ENA]
¢þ
>WENV182821090
OKAS01000344
[OKAS] human gut metagenome; human gut
3995
4070
+
Asn
GTT
[ENA]
¢þ
>WENV182821085
OKAS01000292
[OKAS] human gut metagenome; human gut
4279
4206
-
Phe
GAA
[ENA]
¢þ
>WENV182821096
OKAS01000360
[OKAS] human gut metagenome; human gut
5455
5380
-
Ala
GGC
[ENA]
¢þ
>WENV182821095
OKAS01000360
[OKAS] human gut metagenome; human gut
5570
5495
-
Ala
GGC
[ENA]
¢þ
>WENV182821071
OKAS01000185
[OKAS] human gut metagenome; human gut
6015
5942
-
Trp
CCA
[ENA]
¢þ
>WENV182821091
OKAS01000344
[OKAS] human gut metagenome; human gut
6403
6478
+
Asn
GTT
[ENA]
¢þ
>WENV182821026
OKAS01000057
[OKAS] human gut metagenome; human gut
6429
6500
+
Gln
TTG
[ENA]
¢þ
>WENV182821002
OKAS01000026
[OKAS] human gut metagenome; human gut
6505
6579
+
Ala
GGC
[ENA]
¢þ
>WENV182821056
OKAS01000120
[OKAS] human gut metagenome; human gut
6750
6838
+
Ser
GGA
[ENA]
¢þ
>WENV182821098
OKAS01000385
[OKAS] human gut metagenome; human gut
7464
7390
-
Met
CAT
[ENA]
¢þ
>WENV182821083
OKAS01000249
[OKAS] human gut metagenome; human gut
8201
8277
+
Asp
GTC
[ENA]
¢þ
>WENV182821093
OKAS01000360
[OKAS] human gut metagenome; human gut
8269
8344
+
Val
TAC
[ENA]
¢þ
>WENV182821094
OKAS01000360
[OKAS] human gut metagenome; human gut
8349
8424
+
Lys
TTT
[ENA]
¢þ
>WENV182821072
OKAS01000186
[OKAS] human gut metagenome; human gut
9142
9067
-
Gly
CCC
[ENA]
¢þ
>WENV182821080
OKAS01000228
[OKAS] human gut metagenome; human gut
9888
9962
+
His
GTG
[ENA]
¢þ
>WENV182821062
OKAS01000141
[OKAS] human gut metagenome; human gut
10058
9974
-
Leu
TAA
[ENA]
¢þ
>WENV182821061
OKAS01000141
[OKAS] human gut metagenome; human gut
10151
10078
-
Gly
GCC
[ENA]
¢þ
>WENV182821064
OKAS01000156
[OKAS] human gut metagenome; human gut
10608
10681
+
Lys
CTT
[ENA]
¢þ
>WENV182821077
OKAS01000188
[OKAS] human gut metagenome; human gut
11331
11258
-
Trp
CCA
[ENA]
¢þ
>WENV182821086
OKAS01000310
[OKAS] human gut metagenome; human gut
11418
11492
+
Asp
GTC
[ENA]
¢þ
>WENV182821087
OKAS01000310
[OKAS] human gut metagenome; human gut
11521
11595
+
Asp
GTC
[ENA]
¢þ
>WENV182821088
OKAS01000310
[OKAS] human gut metagenome; human gut
11624
11698
+
Asp
GTC
[ENA]
¢þ
>WENV182821070
OKAS01000183
[OKAS] human gut metagenome; human gut
12331
12243
-
Ser
GGA
[ENA]
¢þ
>WENV182821089
OKAS01000311
[OKAS] human gut metagenome; human gut
12666
12593
-
fMet
CAT
[ENA]
¢þ
>WENV182821076
OKAS01000188
[OKAS] human gut metagenome; human gut
12696
12624
-
Thr
GGT
[ENA]
¢þ
>WENV182821075
OKAS01000188
[OKAS] human gut metagenome; human gut
12899
12816
-
Tyr
GTA
[ENA]
¢þ
>WENV182821016
OKAS01000046
[OKAS] human gut metagenome; human gut
13005
12919
-
Leu
CAG
[ENA]
¢þ
>WENV182821074
OKAS01000188
[OKAS] human gut metagenome; human gut
13016
12942
-
Thr
TGT
[ENA]
¢þ
>WENV182821033
OKAS01000062
[OKAS] human gut metagenome; human gut
13995
13922
-
Lys
TTT
[ENA]
¢þ
>WENV182821046
OKAS01000097
[OKAS] human gut metagenome; human gut
14294
14219
-
Val
TAC
[ENA]
¢þ
>WENV182821047
OKAS01000102
[OKAS] human gut metagenome; human gut
14296
14223
-
Thr
CGT
[ENA]
¢þ
>WENV182821051
OKAS01000108
[OKAS] human gut metagenome; human gut
15474
15557
+
Tyr
GTA
[ENA]
¢þ
>WENV182821052
OKAS01000108
[OKAS] human gut metagenome; human gut
15574
15646
+
Thr
GGT
[ENA]
¢þ
>WENV182821020
OKAS01000050
[OKAS] human gut metagenome; human gut
16401
16475
+
Asp
GTC
[ENA]
¢þ
>WENV182821053
OKAS01000108
[OKAS] human gut metagenome; human gut
16937
17010
+
Trp
CCA
[ENA]
¢þ
>WENV182821082
OKAS01000244
[OKAS] human gut metagenome; human gut
18458
18543
+
Ser
TGA
[ENA]
¢þ
>WENV182821042
OKAS01000088
[OKAS] human gut metagenome; human gut
19827
19752
-
Ile2
CAT
[ENA]
¢þ
>WENV182821009
OKAS01000028
[OKAS] human gut metagenome; human gut
19985
19914
-
Gln
TTG
[ENA]
¢þ
>WENV182821040
OKAS01000084
[OKAS] human gut metagenome; human gut
21598
21525
-
fMet
CAT
[ENA]
¢þ
>WENV182821035
OKAS01000071
[OKAS] human gut metagenome; human gut
22311
22385
+
Ala
GGC
[ENA]
¢þ
>WENV182821045
OKAS01000096
[OKAS] human gut metagenome; human gut
22872
22784
-
Ser
GGA
[ENA]
¢þ
>WENV182821073
OKAS01000187
[OKAS] human gut metagenome; human gut
23170
23255
+
Ser
TGA
[ENA]
¢þ
>WENV182821079
OKAS01000205
[OKAS] human gut metagenome; human gut
23452
23524
+
Arg
CCT
[ENA]
¢þ
>WENV182821078
OKAS01000199
[OKAS] human gut metagenome; human gut
24036
24118
+
Leu
TAG
[ENA]
¢þ
>WENV182821048
OKAS01000104
[OKAS] human gut metagenome; human gut
24438
24366
-
Glu
TTC
[ENA]
¢þ
>WENV182821027
OKAS01000058
[OKAS] human gut metagenome; human gut
27106
27182
+
Met
CAT
[ENA]
¢þ
>WENV182821028
OKAS01000058
[OKAS] human gut metagenome; human gut
27191
27275
+
Leu
TAG
[ENA]
¢þ
>WENV182821029
OKAS01000058
[OKAS] human gut metagenome; human gut
27299
27373
+
Gln
TTG
[ENA]
¢þ
>WENV182821030
OKAS01000058
[OKAS] human gut metagenome; human gut
27408
27482
+
Gln
TTG
[ENA]
¢þ
>WENV182821031
OKAS01000058
[OKAS] human gut metagenome; human gut
27498
27574
+
Met
CAT
[ENA]
¢þ
>WENV182821032
OKAS01000058
[OKAS] human gut metagenome; human gut
27623
27697
+
Gln
CTG
[ENA]
¢þ
>WENV182821066
OKAS01000179
[OKAS] human gut metagenome; human gut
28409
28480
+
Gln
CTG
[ENA]
¢þ
>WENV182821059
OKAS01000132
[OKAS] human gut metagenome; human gut
30568
30643
+
Ile2
CAT
[ENA]
¢þ
>WENV182821065
OKAS01000161
[OKAS] human gut metagenome; human gut
31411
31339
-
Glu
CTC
[ENA]
¢þ
>WENV182821060
OKAS01000137
[OKAS] human gut metagenome; human gut
32403
32327
-
Pro
CGG
[ENA]
¢þ
>WENV182820996
OKAS01000011
[OKAS] human gut metagenome; human gut
36443
36367
-
fMet
CAT
[ENA]
¢þ
>WENV182821014
OKAS01000038
[OKAS] human gut metagenome; human gut
36976
36893
-
Tyr
GTA
[ENA]
¢þ
>WENV182821044
OKAS01000093
[OKAS] human gut metagenome; human gut
37155
37231
+
Arg
TCT
[ENA]
¢þ
>WENV182821034
OKAS01000070
[OKAS] human gut metagenome; human gut
38101
38027
-
Arg
CCT
[ENA]
¢þ
>WENV182821043
OKAS01000091
[OKAS] human gut metagenome; human gut
38288
38364
+
Val
TAC
[ENA]
¢þ
>WENV182821057
OKAS01000122
[OKAS] human gut metagenome; human gut
40256
40331
+
His
GTG
[ENA]
¢þ
>WENV182820995
OKAS01000011
[OKAS] human gut metagenome; human gut
40310
40224
-
Leu
GAG
[ENA]
¢þ
>WENV182821049
OKAS01000105
[OKAS] human gut metagenome; human gut
41081
41155
+
Arg
TCT
[ENA]
¢þ
>WENV182821055
OKAS01000113
[OKAS] human gut metagenome; human gut
42054
41981
-
Thr
CGT
[ENA]
¢þ
>WENV182821015
OKAS01000043
[OKAS] human gut metagenome; human gut
42064
42146
+
Leu
TAG
[ENA]
¢þ
>WENV182821012
OKAS01000036
[OKAS] human gut metagenome; human gut
42591
42678
+
Ser
GGA
[ENA]
¢þ
>WENV182821050
OKAS01000106
[OKAS] human gut metagenome; human gut
44068
44141
+
Gly
CCC
[ENA]
¢þ
>WENV182821037
OKAS01000079
[OKAS] human gut metagenome; human gut
45357
45432
+
Phe
GAA
[ENA]
¢þ
>WENV182821011
OKAS01000032
[OKAS] human gut metagenome; human gut
46367
46293
-
Pro
GGG
[ENA]
¢þ
>WENV182821039
OKAS01000083
[OKAS] human gut metagenome; human gut
47828
47902
+
Asn
GTT
[ENA]
¢þ
>WENV182821003
OKAS01000026
[OKAS] human gut metagenome; human gut
49837
49764
-
Lys
CTT
[ENA]
¢þ
>WENV182821013
OKAS01000038
[OKAS] human gut metagenome; human gut
51632
51706
+
Thr
TGT
[ENA]
¢þ
>WENV182821025
OKAS01000054
[OKAS] human gut metagenome; human gut
52511
52439
-
Arg
CCG
[ENA]
¢þ
>WENV182821008
OKAS01000027
[OKAS] human gut metagenome; human gut
55815
55739
-
Pro
TGG
[ENA]
¢þ
>WENV182821007
OKAS01000027
[OKAS] human gut metagenome; human gut
55944
55858
-
Leu
CAG
[ENA]
¢þ
>WENV182821006
OKAS01000027
[OKAS] human gut metagenome; human gut
56040
55965
-
His
GTG
[ENA]
¢þ
>WENV182821005
OKAS01000027
[OKAS] human gut metagenome; human gut
56175
56099
-
Arg
CCG
[ENA]
¢þ
>WENV182820994
OKAS01000007
[OKAS] human gut metagenome; human gut
58722
58797
+
Thr
CGT
[ENA]
¢þ
>WENV182821018
OKAS01000047
[OKAS] human gut metagenome; human gut
62267
62194
-
Trp
CCA
[ENA]
¢þ
>WENV182821000
OKAS01000018
[OKAS] human gut metagenome; human gut
63708
63633
-
Gly
GCC
[ENA]
¢þ
>WENV182820999
OKAS01000018
[OKAS] human gut metagenome; human gut
63819
63744
-
Gly
GCC
[ENA]
¢þ
>WENV182820998
OKAS01000018
[OKAS] human gut metagenome; human gut
64052
63977
-
Gly
GCC
[ENA]
¢þ
>WENV182821024
OKAS01000051
[OKAS] human gut metagenome; human gut
64461
64387
-
His
GTG
[ENA]
¢þ
>WENV182821023
OKAS01000051
[OKAS] human gut metagenome; human gut
64544
64471
-
Phe
GAA
[ENA]
¢þ
>WENV182821022
OKAS01000051
[OKAS] human gut metagenome; human gut
64623
64549
-
Arg
ACG
[ENA]
¢þ
>WENV182821021
OKAS01000051
[OKAS] human gut metagenome; human gut
64715
64630
-
Ser
GCT
[ENA]
¢þ
>WENV182820991
OKAS01000005
[OKAS] human gut metagenome; human gut
70923
70839
-
Tyr
GTA
[ENA]
¢þ
>WENV182821017
OKAS01000047
[OKAS] human gut metagenome; human gut
75889
75974
+
Ser
TGA
[ENA]
¢þ
>WENV182821010
OKAS01000032
[OKAS] human gut metagenome; human gut
79184
79255
+
Gln
CTG
[ENA]
¢þ
>WENV182821001
OKAS01000023
[OKAS] human gut metagenome; human gut
89778
89854
+
Pro
GGG
[ENA]
¢þ
>WENV182821004
OKAS01000027
[OKAS] human gut metagenome; human gut
90708
90633
-
Trp
CCA
[ENA]
¢þ
>WENV182820997
OKAS01000018
[OKAS] human gut metagenome; human gut
92906
92981
+
Phe
GAA
[ENA]
¢þ
>WENV182820986
OKAS01000002
[OKAS] human gut metagenome; human gut
98195
98271
+
fMet
CAT
[ENA]
¢þ
>WENV182820992
OKAS01000006
[OKAS] human gut metagenome; human gut
99191
99278
+
Ser
GGA
[ENA]
¢þ
>WENV182820979
OKAS01000001
[OKAS] human gut metagenome; human gut
128877
128953
+
Val
GAC
[ENA]
¢þ
>WENV182820980
OKAS01000001
[OKAS] human gut metagenome; human gut
128958
129034
+
Val
GAC
[ENA]
¢þ
>WENV182820993
OKAS01000006
[OKAS] human gut metagenome; human gut
147983
148070
+
Ser
TGA
[ENA]
¢þ
>WENV182820988
OKAS01000002
[OKAS] human gut metagenome; human gut
165580
165507
-
Gly
CCC
[ENA]
¢þ
>WENV182820989
OKAS01000003
[OKAS] human gut metagenome; human gut
203712
203640
-
Arg
CCT
[ENA]
¢þ
>WENV182820990
OKAS01000004
[OKAS] human gut metagenome; human gut
210834
210761
-
Pro
CGG
[ENA]
¢þ
>WENV182820987
OKAS01000002
[OKAS] human gut metagenome; human gut
279649
279724
+
Phe
GAA
[ENA]
¢þ
>WENV182820985
OKAS01000001
[OKAS] human gut metagenome; human gut
374300
374214
-
Leu
TAA
[ENA]
¢þ
>WENV182820984
OKAS01000001
[OKAS] human gut metagenome; human gut
374386
374313
-
Cys
GCA
[ENA]
¢þ
>WENV182820983
OKAS01000001
[OKAS] human gut metagenome; human gut
374516
374441
-
Gly
GCC
[ENA]
¢þ
>WENV182820982
OKAS01000001
[OKAS] human gut metagenome; human gut
425374
425285
-
Ser
CGA
[ENA]
¢þ
>WENV182820981
OKAS01000001
[OKAS] human gut metagenome; human gut
426366
426441
+
Asn
GTT
[ENA]
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Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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