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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OKAV] human gut metagenome; human gut
HIT:
95 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182821323
OKAV01000838
[OKAV] human gut metagenome; human gut
2
77
+
Lys
TTT
[ENA]
¢þ
>WENV182821293
OKAV01000065
[OKAV] human gut metagenome; human gut
37
108
+
Trp
CCA
[ENA]
¢þ
>WENV182821334
OKAV01001135
[OKAV] human gut metagenome; human gut
62
136
+
Asn
GTT
[ENA]
¢þ
>WENV182821288
OKAV01000055
[OKAV] human gut metagenome; human gut
64
153
+
Ser
GCT
[ENA]
¢þ
>WENV182821355
OKAV01003412
[OKAV] human gut metagenome; human gut
66
139
+
Pro
TGG
[ENA]
¢þ
>WENV182821353
OKAV01003173
[OKAV] human gut metagenome; human gut
75
2
-
Arg
ACG
[ENA]
¢þ
>WENV182821328
OKAV01000849
[OKAV] human gut metagenome; human gut
77
2
-
Thr
TGT
[ENA]
¢þ
>WENV182821269
OKAV01000012
[OKAV] human gut metagenome; human gut
84
11
-
Lys
CTT
[ENA]
¢þ
>WENV182821277
OKAV01000048
[OKAV] human gut metagenome; human gut
96
186
+
Ser
GGA
[ENA]
¢þ
>WENV182821354
OKAV01003373
[OKAV] human gut metagenome; human gut
106
196
+
Ser
GGA
[ENA]
¢þ
>WENV182821335
OKAV01001135
[OKAV] human gut metagenome; human gut
139
229
+
Ser
GCT
[ENA]
¢þ
>WENV182821343
OKAV01003062
[OKAV] human gut metagenome; human gut
148
76
-
Ala
TGC
[ENA]
¢þ
>WENV182821356
OKAV01003412
[OKAV] human gut metagenome; human gut
152
226
+
Ala
TGC
[ENA]
¢þ
>WENV182821327
OKAV01000849
[OKAV] human gut metagenome; human gut
159
85
-
Phe
GAA
[ENA]
¢þ
>WENV182821289
OKAV01000055
[OKAV] human gut metagenome; human gut
167
240
+
Glu
TTC
[ENA]
¢þ
>WENV182821352
OKAV01003173
[OKAV] human gut metagenome; human gut
175
90
-
Leu
TAA
[ENA]
¢þ
>WENV182821278
OKAV01000048
[OKAV] human gut metagenome; human gut
202
275
+
Glu
TTC
[ENA]
¢þ
>WENV182821342
OKAV01002202
[OKAV] human gut metagenome; human gut
222
311
+
Ser
CGA
[ENA]
¢þ
>WENV182821357
OKAV01003412
[OKAV] human gut metagenome; human gut
248
323
+
Met
CAT
[ENA]
¢þ
>WENV182821341
OKAV01002024
[OKAV] human gut metagenome; human gut
255
180
-
Glu
TTC
[ENA]
¢þ
>WENV182821351
OKAV01003173
[OKAV] human gut metagenome; human gut
262
191
-
Gly
GCC
[ENA]
¢þ
>WENV182821279
OKAV01000048
[OKAV] human gut metagenome; human gut
301
375
+
Val
TAC
[ENA]
¢þ
>WENV182821326
OKAV01000849
[OKAV] human gut metagenome; human gut
336
263
-
fMet
CAT
[ENA]
¢þ
>WENV182821350
OKAV01003173
[OKAV] human gut metagenome; human gut
342
267
-
Thr
TGT
[ENA]
¢þ
>WENV182821358
OKAV01003412
[OKAV] human gut metagenome; human gut
342
417
+
Ile2
CAT
[ENA]
¢þ
>WENV182821345
OKAV01003066
[OKAV] human gut metagenome; human gut
345
270
-
Thr
GGT
[ENA]
¢þ
>WENV182821280
OKAV01000048
[OKAV] human gut metagenome; human gut
385
460
+
Asp
GTC
[ENA]
¢þ
>WENV182821313
OKAV01000287
[OKAV] human gut metagenome; human gut
413
337
-
Pro
TGG
[ENA]
¢þ
>WENV182821344
OKAV01003066
[OKAV] human gut metagenome; human gut
425
351
-
Gly
TCC
[ENA]
¢þ
>WENV182821349
OKAV01003173
[OKAV] human gut metagenome; human gut
431
348
-
Leu
TAG
[ENA]
¢þ
>WENV182821314
OKAV01000290
[OKAV] human gut metagenome; human gut
434
509
+
Asn
GTT
[ENA]
¢þ
>WENV182821325
OKAV01000849
[OKAV] human gut metagenome; human gut
440
348
-
Ser
TGA
[ENA]
¢þ
>WENV182821347
OKAV01003076
[OKAV] human gut metagenome; human gut
453
529
+
Arg
TCT
[ENA]
¢þ
>WENV182821346
OKAV01003075
[OKAV] human gut metagenome; human gut
469
543
+
Arg
TCT
[ENA]
¢þ
>WENV182821332
OKAV01000963
[OKAV] human gut metagenome; human gut
495
419
-
Val
GAC
[ENA]
¢þ
>WENV182821273
OKAV01000025
[OKAV] human gut metagenome; human gut
503
576
+
Ile2
CAT
[ENA]
¢þ
>WENV182821281
OKAV01000048
[OKAV] human gut metagenome; human gut
506
578
+
Phe
GAA
[ENA]
¢þ
>WENV182821348
OKAV01003173
[OKAV] human gut metagenome; human gut
520
446
-
Lys
TTT
[ENA]
¢þ
>WENV182821312
OKAV01000287
[OKAV] human gut metagenome; human gut
543
457
-
Leu
CAG
[ENA]
¢þ
>WENV182821324
OKAV01000849
[OKAV] human gut metagenome; human gut
553
478
-
Asp
GTC
[ENA]
¢þ
>WENV182821333
OKAV01001115
[OKAV] human gut metagenome; human gut
557
641
+
Leu
CAA
[ENA]
¢þ
>WENV182821331
OKAV01000963
[OKAV] human gut metagenome; human gut
580
504
-
Val
GAC
[ENA]
¢þ
>WENV182821282
OKAV01000048
[OKAV] human gut metagenome; human gut
583
665
+
Tyr
GTA
[ENA]
¢þ
>WENV182821311
OKAV01000287
[OKAV] human gut metagenome; human gut
640
565
-
His
GTG
[ENA]
¢þ
>WENV182821283
OKAV01000048
[OKAV] human gut metagenome; human gut
669
742
+
Trp
CCA
[ENA]
¢þ
>WENV182821322
OKAV01000764
[OKAV] human gut metagenome; human gut
738
827
+
Ser
CGA
[ENA]
¢þ
>WENV182821284
OKAV01000048
[OKAV] human gut metagenome; human gut
779
852
+
His
GTG
[ENA]
¢þ
>WENV182821310
OKAV01000287
[OKAV] human gut metagenome; human gut
785
709
-
Arg
CCG
[ENA]
¢þ
>WENV182821285
OKAV01000048
[OKAV] human gut metagenome; human gut
865
938
+
Gln
TTG
[ENA]
¢þ
>WENV182821286
OKAV01000048
[OKAV] human gut metagenome; human gut
963
1033
+
Cys
GCA
[ENA]
¢þ
>WENV182821330
OKAV01000961
[OKAV] human gut metagenome; human gut
1001
925
-
Pro
GGG
[ENA]
¢þ
>WENV182821319
OKAV01000531
[OKAV] human gut metagenome; human gut
1012
1087
+
Ala
GGC
[ENA]
¢þ
>WENV182821287
OKAV01000048
[OKAV] human gut metagenome; human gut
1046
1131
+
Leu
CAA
[ENA]
¢þ
>WENV182821340
OKAV01001327
[OKAV] human gut metagenome; human gut
1158
1233
+
Gly
GCC
[ENA]
¢þ
>WENV182821336
OKAV01001245
[OKAV] human gut metagenome; human gut
1299
1374
+
Thr
CGT
[ENA]
¢þ
>WENV182821315
OKAV01000466
[OKAV] human gut metagenome; human gut
1319
1395
+
fMet
CAT
[ENA]
¢þ
>WENV182821309
OKAV01000258
[OKAV] human gut metagenome; human gut
1433
1508
+
Lys
CTT
[ENA]
¢þ
>WENV182821290
OKAV01000056
[OKAV] human gut metagenome; human gut
1467
1542
+
Phe
GAA
[ENA]
¢þ
>WENV182821338
OKAV01001303
[OKAV] human gut metagenome; human gut
1618
1693
+
Thr
TGT
[ENA]
¢þ
>WENV182821339
OKAV01001303
[OKAV] human gut metagenome; human gut
1702
1786
+
Tyr
GTA
[ENA]
¢þ
>WENV182821337
OKAV01001294
[OKAV] human gut metagenome; human gut
1796
1721
-
Phe
GAA
[ENA]
¢þ
>WENV182821316
OKAV01000488
[OKAV] human gut metagenome; human gut
2136
2211
+
Gly
GCC
[ENA]
¢þ
>WENV182821329
OKAV01000900
[OKAV] human gut metagenome; human gut
2232
2319
+
Ser
TGA
[ENA]
¢þ
>WENV182821317
OKAV01000488
[OKAV] human gut metagenome; human gut
2252
2325
+
Cys
GCA
[ENA]
¢þ
>WENV182821318
OKAV01000488
[OKAV] human gut metagenome; human gut
2339
2425
+
Leu
TAA
[ENA]
¢þ
>WENV182821321
OKAV01000572
[OKAV] human gut metagenome; human gut
2491
2564
+
Gly
CCC
[ENA]
¢þ
>WENV182821299
OKAV01000093
[OKAV] human gut metagenome; human gut
2593
2522
-
Trp
CCA
[ENA]
¢þ
>WENV182821308
OKAV01000207
[OKAV] human gut metagenome; human gut
3386
3291
-
SeC
TCA
[ENA]
¢þ
>WENV182821292
OKAV01000061
[OKAV] human gut metagenome; human gut
3635
3560
-
Ile2
CAT
[ENA]
¢þ
>WENV182821320
OKAV01000562
[OKAV] human gut metagenome; human gut
3706
3630
-
Asp
GTC
[ENA]
¢þ
>WENV182821268
OKAV01000011
[OKAV] human gut metagenome; human gut
4484
4409
-
Arg
TCT
[ENA]
¢þ
>WENV182821300
OKAV01000096
[OKAV] human gut metagenome; human gut
4760
4836
+
Met
CAT
[ENA]
¢þ
>WENV182821301
OKAV01000096
[OKAV] human gut metagenome; human gut
4845
4929
+
Leu
TAG
[ENA]
¢þ
>WENV182821302
OKAV01000096
[OKAV] human gut metagenome; human gut
4953
5027
+
Gln
TTG
[ENA]
¢þ
>WENV182821303
OKAV01000096
[OKAV] human gut metagenome; human gut
5075
5151
+
Met
CAT
[ENA]
¢þ
>WENV182821304
OKAV01000096
[OKAV] human gut metagenome; human gut
5170
5244
+
Gln
CTG
[ENA]
¢þ
>WENV182821275
OKAV01000036
[OKAV] human gut metagenome; human gut
6960
6888
-
Thr
CGT
[ENA]
¢þ
>WENV182821306
OKAV01000110
[OKAV] human gut metagenome; human gut
8945
8859
-
Leu
GAG
[ENA]
¢þ
>WENV182821307
OKAV01000116
[OKAV] human gut metagenome; human gut
9948
9873
-
Trp
CCA
[ENA]
¢þ
>WENV182821305
OKAV01000097
[OKAV] human gut metagenome; human gut
10767
10843
+
Pro
CGG
[ENA]
¢þ
>WENV182821296
OKAV01000079
[OKAV] human gut metagenome; human gut
11526
11618
+
Ser
GCT
[ENA]
¢þ
>WENV182821297
OKAV01000079
[OKAV] human gut metagenome; human gut
11623
11699
+
Arg
ACG
[ENA]
¢þ
>WENV182821298
OKAV01000079
[OKAV] human gut metagenome; human gut
11762
11838
+
Arg
ACG
[ENA]
¢þ
>WENV182821294
OKAV01000066
[OKAV] human gut metagenome; human gut
11795
11869
+
Arg
CCT
[ENA]
¢þ
>WENV182821295
OKAV01000073
[OKAV] human gut metagenome; human gut
11801
11876
+
Ile2
CAT
[ENA]
¢þ
>WENV182821291
OKAV01000057
[OKAV] human gut metagenome; human gut
15645
15574
-
Trp
CCA
[ENA]
¢þ
>WENV182821270
OKAV01000015
[OKAV] human gut metagenome; human gut
20317
20390
+
Arg
CCG
[ENA]
¢þ
>WENV182821271
OKAV01000019
[OKAV] human gut metagenome; human gut
20719
20791
+
Thr
GGT
[ENA]
¢þ
>WENV182821276
OKAV01000038
[OKAV] human gut metagenome; human gut
24574
24501
-
Pro
TGG
[ENA]
¢þ
>WENV182821274
OKAV01000031
[OKAV] human gut metagenome; human gut
31425
31350
-
Asn
GTT
[ENA]
¢þ
>WENV182821272
OKAV01000024
[OKAV] human gut metagenome; human gut
38309
38236
-
Ile2
CAT
[ENA]
¢þ
>WENV182821267
OKAV01000011
[OKAV] human gut metagenome; human gut
53821
53896
+
Arg
CCT
[ENA]
¢þ
>WENV182821264
OKAV01000004
[OKAV] human gut metagenome; human gut
65730
65816
+
Leu
GAG
[ENA]
¢þ
>WENV182821265
OKAV01000004
[OKAV] human gut metagenome; human gut
77063
77145
+
Tyr
GTA
[ENA]
¢þ
>WENV182821266
OKAV01000004
[OKAV] human gut metagenome; human gut
77153
77226
+
Gln
TTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK