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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKAZ] human gut metagenome; human gut
HIT:
36 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182821628
OKAZ01000472
[OKAZ] human gut metagenome; human gut
106
182
+
Asp
GTC
[ENA]
¢þ
>WENV182821629
OKAZ01000472
[OKAZ] human gut metagenome; human gut
236
311
+
Trp
CCA
[ENA]
¢þ
>WENV182821616
OKAZ01000130
[OKAZ] human gut metagenome; human gut
340
265
-
Phe
GAA
[ENA]
¢þ
>WENV182821627
OKAZ01000435
[OKAZ] human gut metagenome; human gut
368
292
-
Arg
TCT
[ENA]
¢þ
>WENV182821636
OKAZ01000768
[OKAZ] human gut metagenome; human gut
391
480
+
Ser
CGA
[ENA]
¢þ
>WENV182821638
OKAZ01001110
[OKAZ] human gut metagenome; human gut
426
501
+
Thr
TGT
[ENA]
¢þ
>WENV182821633
OKAZ01000559
[OKAZ] human gut metagenome; human gut
845
919
+
Gly
TCC
[ENA]
¢þ
>WENV182821631
OKAZ01000553
[OKAZ] human gut metagenome; human gut
861
936
+
Gly
GCC
[ENA]
¢þ
>WENV182821632
OKAZ01000553
[OKAZ] human gut metagenome; human gut
1064
1150
+
Leu
TAA
[ENA]
¢þ
>WENV182821615
OKAZ01000123
[OKAZ] human gut metagenome; human gut
1107
1183
+
Val
GAC
[ENA]
¢þ
>WENV182821630
OKAZ01000478
[OKAZ] human gut metagenome; human gut
1152
1239
+
Ser
TGA
[ENA]
¢þ
>WENV182821637
OKAZ01000883
[OKAZ] human gut metagenome; human gut
1270
1184
-
Leu
GAG
[ENA]
¢þ
>WENV182821635
OKAZ01000705
[OKAZ] human gut metagenome; human gut
2082
2174
+
Ser
GCT
[ENA]
¢þ
>WENV182821634
OKAZ01000563
[OKAZ] human gut metagenome; human gut
2558
2483
-
Asn
GTT
[ENA]
¢þ
>WENV182821626
OKAZ01000432
[OKAZ] human gut metagenome; human gut
3841
3766
-
Asn
GTT
[ENA]
¢þ
>WENV182821614
OKAZ01000105
[OKAZ] human gut metagenome; human gut
4854
4930
+
Pro
GGG
[ENA]
¢þ
>WENV182821618
OKAZ01000194
[OKAZ] human gut metagenome; human gut
4963
5039
+
Met
CAT
[ENA]
¢þ
>WENV182821619
OKAZ01000194
[OKAZ] human gut metagenome; human gut
5049
5133
+
Leu
TAG
[ENA]
¢þ
>WENV182821620
OKAZ01000194
[OKAZ] human gut metagenome; human gut
5157
5231
+
Gln
TTG
[ENA]
¢þ
>WENV182821621
OKAZ01000194
[OKAZ] human gut metagenome; human gut
5268
5342
+
Gln
CTG
[ENA]
¢þ
>WENV182821625
OKAZ01000317
[OKAZ] human gut metagenome; human gut
5545
5461
-
Tyr
GTA
[ENA]
¢þ
>WENV182821624
OKAZ01000277
[OKAZ] human gut metagenome; human gut
5690
5764
+
Arg
CCT
[ENA]
¢þ
>WENV182821622
OKAZ01000198
[OKAZ] human gut metagenome; human gut
6364
6439
+
Thr
CGT
[ENA]
¢þ
>WENV182821623
OKAZ01000235
[OKAZ] human gut metagenome; human gut
6845
6769
-
Thr
TGT
[ENA]
¢þ
>WENV182821608
OKAZ01000021
[OKAZ] human gut metagenome; human gut
7703
7628
-
Gly
GCC
[ENA]
¢þ
>WENV182821609
OKAZ01000027
[OKAZ] human gut metagenome; human gut
7773
7697
-
Pro
CGG
[ENA]
¢þ
>WENV182821607
OKAZ01000021
[OKAZ] human gut metagenome; human gut
7847
7772
-
Gly
GCC
[ENA]
¢þ
>WENV182821617
OKAZ01000147
[OKAZ] human gut metagenome; human gut
9282
9207
-
Lys
TTT
[ENA]
¢þ
>WENV182821613
OKAZ01000079
[OKAZ] human gut metagenome; human gut
10637
10564
-
Gly
CCC
[ENA]
¢þ
>WENV182821604
OKAZ01000005
[OKAZ] human gut metagenome; human gut
10878
10954
+
fMet
CAT
[ENA]
¢þ
>WENV182821612
OKAZ01000059
[OKAZ] human gut metagenome; human gut
11551
11475
-
Asp
GTC
[ENA]
¢þ
>WENV182821611
OKAZ01000045
[OKAZ] human gut metagenome; human gut
13384
13308
-
fMet
CAT
[ENA]
¢þ
>WENV182821610
OKAZ01000031
[OKAZ] human gut metagenome; human gut
15250
15175
-
Ala
GGC
[ENA]
¢þ
>WENV182821606
OKAZ01000018
[OKAZ] human gut metagenome; human gut
17281
17206
-
Ile2
CAT
[ENA]
¢þ
>WENV182821605
OKAZ01000007
[OKAZ] human gut metagenome; human gut
25048
24973
-
Phe
GAA
[ENA]
¢þ
>WENV182821603
OKAZ01000003
[OKAZ] human gut metagenome; human gut
32484
32578
+
SeC
TCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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