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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OKBE] human gut metagenome; human gut
HIT:
29 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182822132
OKBE01001797
[OKBE] human gut metagenome; human gut
141
66
-
Thr
TGT
[ENA]
¢þ
>WENV182822120
OKBE01000406
[OKBE] human gut metagenome; human gut
205
280
+
Val
TAC
[ENA]
¢þ
>WENV182822126
OKBE01000697
[OKBE] human gut metagenome; human gut
273
198
-
Thr
GGT
[ENA]
¢þ
>WENV182822121
OKBE01000406
[OKBE] human gut metagenome; human gut
285
360
+
Lys
TTT
[ENA]
¢þ
>WENV182822134
OKBE01001919
[OKBE] human gut metagenome; human gut
295
369
+
Arg
CCT
[ENA]
¢þ
>WENV182822135
OKBE01002199
[OKBE] human gut metagenome; human gut
301
226
-
Glu
TTC
[ENA]
¢þ
>WENV182822125
OKBE01000697
[OKBE] human gut metagenome; human gut
353
279
-
Gly
TCC
[ENA]
¢þ
>WENV182822111
OKBE01000031
[OKBE] human gut metagenome; human gut
411
336
-
Ile2
CAT
[ENA]
¢þ
>WENV182822127
OKBE01000773
[OKBE] human gut metagenome; human gut
453
526
+
Gly
CCC
[ENA]
¢þ
>WENV182822124
OKBE01000697
[OKBE] human gut metagenome; human gut
553
469
-
Tyr
GTA
[ENA]
¢þ
>WENV182822128
OKBE01000868
[OKBE] human gut metagenome; human gut
670
745
+
Gly
GCC
[ENA]
¢þ
>WENV182822133
OKBE01001821
[OKBE] human gut metagenome; human gut
821
913
+
Ser
GCT
[ENA]
¢þ
>WENV182822113
OKBE01000068
[OKBE] human gut metagenome; human gut
822
908
+
Leu
CAG
[ENA]
¢þ
>WENV182822118
OKBE01000254
[OKBE] human gut metagenome; human gut
830
755
-
Phe
GAA
[ENA]
¢þ
>WENV182822130
OKBE01001513
[OKBE] human gut metagenome; human gut
900
976
+
Pro
CGG
[ENA]
¢þ
>WENV182822131
OKBE01001728
[OKBE] human gut metagenome; human gut
938
863
-
Trp
CCA
[ENA]
¢þ
>WENV182822123
OKBE01000654
[OKBE] human gut metagenome; human gut
1068
1143
+
Asn
GTT
[ENA]
¢þ
>WENV182822129
OKBE01000905
[OKBE] human gut metagenome; human gut
1704
1780
+
Arg
TCT
[ENA]
¢þ
>WENV182822117
OKBE01000152
[OKBE] human gut metagenome; human gut
1820
1745
-
Thr
CGT
[ENA]
¢þ
>WENV182822122
OKBE01000637
[OKBE] human gut metagenome; human gut
2089
2164
+
Ala
GGC
[ENA]
¢þ
>WENV182822119
OKBE01000328
[OKBE] human gut metagenome; human gut
2406
2330
-
Pro
GGG
[ENA]
¢þ
>WENV182822109
OKBE01000026
[OKBE] human gut metagenome; human gut
2584
2670
+
Leu
GAG
[ENA]
¢þ
>WENV182822114
OKBE01000070
[OKBE] human gut metagenome; human gut
3169
3256
+
Ser
GGA
[ENA]
¢þ
>WENV182822116
OKBE01000126
[OKBE] human gut metagenome; human gut
3257
3183
-
Gln
CTG
[ENA]
¢þ
>WENV182822115
OKBE01000126
[OKBE] human gut metagenome; human gut
3379
3303
-
Met
CAT
[ENA]
¢þ
>WENV182822112
OKBE01000051
[OKBE] human gut metagenome; human gut
5042
5118
+
Asp
GTC
[ENA]
¢þ
>WENV182822108
OKBE01000006
[OKBE] human gut metagenome; human gut
5418
5343
-
Ala
TGC
[ENA]
¢þ
>WENV182822107
OKBE01000006
[OKBE] human gut metagenome; human gut
5601
5525
-
Ile
GAT
[ENA]
¢þ
>WENV182822110
OKBE01000026
[OKBE] human gut metagenome; human gut
6429
6505
+
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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