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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKBH] human gut metagenome; human gut
HIT:
17 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182822375
OKBH01000798
[OKBH] human gut metagenome; human gut
64
139
+
Val
TAC
[ENA]
¢þ
>WENV182822384
OKBH01001030
[OKBH] human gut metagenome; human gut
66
140
+
Asn
GTT
[ENA]
¢þ
>WENV182822374
OKBH01000763
[OKBH] human gut metagenome; human gut
77
5
-
Arg
CCG
[ENA]
¢þ
>WENV182822385
OKBH01001030
[OKBH] human gut metagenome; human gut
141
214
+
Glu
TTC
[ENA]
¢þ
>WENV182822376
OKBH01000798
[OKBH] human gut metagenome; human gut
156
239
+
Tyr
GTA
[ENA]
¢þ
>WENV182822377
OKBH01000798
[OKBH] human gut metagenome; human gut
244
318
+
Gln
TTG
[ENA]
¢þ
>WENV182822386
OKBH01001030
[OKBH] human gut metagenome; human gut
265
355
+
Ser
GGA
[ENA]
¢þ
>WENV182822378
OKBH01000798
[OKBH] human gut metagenome; human gut
322
394
+
Lys
TTT
[ENA]
¢þ
>WENV182822379
OKBH01000798
[OKBH] human gut metagenome; human gut
413
487
+
Gly
GCC
[ENA]
¢þ
>WENV182822380
OKBH01000798
[OKBH] human gut metagenome; human gut
499
587
+
Leu
TAA
[ENA]
¢þ
>WENV182822387
OKBH01001209
[OKBH] human gut metagenome; human gut
519
436
-
Leu
CAA
[ENA]
¢þ
>WENV182822381
OKBH01000798
[OKBH] human gut metagenome; human gut
600
674
+
Arg
ACG
[ENA]
¢þ
>WENV182822382
OKBH01000798
[OKBH] human gut metagenome; human gut
683
756
+
Pro
TGG
[ENA]
¢þ
>WENV182822383
OKBH01000798
[OKBH] human gut metagenome; human gut
773
848
+
Ala
TGC
[ENA]
¢þ
>WENV182822373
OKBH01000002
[OKBH] human gut metagenome; human gut
7144
7072
-
Asp
GTC
[ENA]
¢þ
>WENV182822372
OKBH01000002
[OKBH] human gut metagenome; human gut
7232
7159
-
fMet
CAT
[ENA]
¢þ
>WENV182822371
OKBH01000002
[OKBH] human gut metagenome; human gut
7336
7244
-
Ser
TGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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