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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKBI] human gut metagenome; human gut
HIT:
78 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182822451
OKBI01002114
[OKBI] human gut metagenome; human gut
75
1
-
Asp
GTC
[ENA]
¢þ
>WENV182822461
OKBI01003694
[OKBI] human gut metagenome; human gut
78
149
+
Gly
GCC
[ENA]
¢þ
>WENV182822442
OKBI01000868
[OKBI] human gut metagenome; human gut
79
5
-
Gly
GCC
[ENA]
¢þ
>WENV182822426
OKBI01000608
[OKBI] human gut metagenome; human gut
87
11
-
Arg
TCT
[ENA]
¢þ
>WENV182822409
OKBI01000170
[OKBI] human gut metagenome; human gut
90
165
+
Ala
GGC
[ENA]
¢þ
>WENV182822438
OKBI01000866
[OKBI] human gut metagenome; human gut
132
58
-
Gly
TCC
[ENA]
¢þ
>WENV182822431
OKBI01000731
[OKBI] human gut metagenome; human gut
143
67
-
Arg
TCG
[ENA]
¢þ
>WENV182822462
OKBI01003694
[OKBI] human gut metagenome; human gut
165
250
+
Leu
TAA
[ENA]
¢þ
>WENV182822441
OKBI01000868
[OKBI] human gut metagenome; human gut
189
106
-
Leu
TAG
[ENA]
¢þ
>WENV182822430
OKBI01000731
[OKBI] human gut metagenome; human gut
226
151
-
Ile2
CAT
[ENA]
¢þ
>WENV182822465
OKBI01003866
[OKBI] human gut metagenome; human gut
236
163
-
Arg
CCG
[ENA]
¢þ
>WENV182822463
OKBI01003694
[OKBI] human gut metagenome; human gut
265
338
+
Arg
ACG
[ENA]
¢þ
>WENV182822440
OKBI01000868
[OKBI] human gut metagenome; human gut
279
205
-
Lys
TTT
[ENA]
¢þ
>WENV182822459
OKBI01002588
[OKBI] human gut metagenome; human gut
319
247
-
Thr
CGT
[ENA]
¢þ
>WENV182822437
OKBI01000866
[OKBI] human gut metagenome; human gut
332
248
-
Tyr
GTA
[ENA]
¢þ
>WENV182822464
OKBI01003694
[OKBI] human gut metagenome; human gut
350
423
+
Pro
TGG
[ENA]
¢þ
>WENV182822446
OKBI01001328
[OKBI] human gut metagenome; human gut
352
265
-
Ser
TGA
[ENA]
¢þ
>WENV182822439
OKBI01000868
[OKBI] human gut metagenome; human gut
358
284
-
Val
TAC
[ENA]
¢þ
>WENV182822436
OKBI01000866
[OKBI] human gut metagenome; human gut
418
343
-
Thr
TGT
[ENA]
¢þ
>WENV182822458
OKBI01002294
[OKBI] human gut metagenome; human gut
540
455
-
Leu
CAA
[ENA]
¢þ
>WENV182822460
OKBI01003132
[OKBI] human gut metagenome; human gut
576
650
+
Lys
CTT
[ENA]
¢þ
>WENV182822457
OKBI01002294
[OKBI] human gut metagenome; human gut
623
553
-
Cys
GCA
[ENA]
¢þ
>WENV182822456
OKBI01002294
[OKBI] human gut metagenome; human gut
721
648
-
Gln
TTG
[ENA]
¢þ
>WENV182822455
OKBI01002294
[OKBI] human gut metagenome; human gut
807
734
-
His
GTG
[ENA]
¢þ
>WENV182822454
OKBI01002294
[OKBI] human gut metagenome; human gut
917
844
-
Trp
CCA
[ENA]
¢þ
>WENV182822425
OKBI01000580
[OKBI] human gut metagenome; human gut
945
870
-
Ile2
CAT
[ENA]
¢þ
>WENV182822453
OKBI01002294
[OKBI] human gut metagenome; human gut
1003
921
-
Tyr
GTA
[ENA]
¢þ
>WENV182822450
OKBI01002057
[OKBI] human gut metagenome; human gut
1004
930
-
Gln
CTG
[ENA]
¢þ
>WENV182822432
OKBI01000770
[OKBI] human gut metagenome; human gut
1048
1121
+
Thr
TGT
[ENA]
¢þ
>WENV182822449
OKBI01002057
[OKBI] human gut metagenome; human gut
1116
1042
-
Gln
CTG
[ENA]
¢þ
>WENV182822403
OKBI01000143
[OKBI] human gut metagenome; human gut
1132
1046
-
Leu
TAA
[ENA]
¢þ
>WENV182822452
OKBI01002159
[OKBI] human gut metagenome; human gut
1145
1069
-
Arg
TCT
[ENA]
¢þ
>WENV182822400
OKBI01000135
[OKBI] human gut metagenome; human gut
1212
1125
-
Ser
GGA
[ENA]
¢þ
>WENV182822402
OKBI01000143
[OKBI] human gut metagenome; human gut
1218
1145
-
Cys
GCA
[ENA]
¢þ
>WENV182822448
OKBI01002057
[OKBI] human gut metagenome; human gut
1241
1165
-
Met
CAT
[ENA]
¢þ
>WENV182822401
OKBI01000143
[OKBI] human gut metagenome; human gut
1334
1259
-
Gly
GCC
[ENA]
¢þ
>WENV182822434
OKBI01000787
[OKBI] human gut metagenome; human gut
1399
1313
-
Leu
CAG
[ENA]
¢þ
>WENV182822433
OKBI01000787
[OKBI] human gut metagenome; human gut
1520
1434
-
Leu
CAG
[ENA]
¢þ
>WENV182822412
OKBI01000230
[OKBI] human gut metagenome; human gut
1931
1856
-
Thr
CGT
[ENA]
¢þ
>WENV182822445
OKBI01001055
[OKBI] human gut metagenome; human gut
2048
1972
-
Asp
GTC
[ENA]
¢þ
>WENV182822423
OKBI01000521
[OKBI] human gut metagenome; human gut
2106
2181
+
Asn
GTT
[ENA]
¢þ
>WENV182822447
OKBI01001473
[OKBI] human gut metagenome; human gut
2192
2116
-
fMet
CAT
[ENA]
¢þ
>WENV182822444
OKBI01000987
[OKBI] human gut metagenome; human gut
2412
2337
-
Thr
CGT
[ENA]
¢þ
>WENV182822443
OKBI01000925
[OKBI] human gut metagenome; human gut
2829
2754
-
Asn
GTT
[ENA]
¢þ
>WENV182822410
OKBI01000191
[OKBI] human gut metagenome; human gut
2983
3059
+
Pro
CGG
[ENA]
¢þ
>WENV182822404
OKBI01000160
[OKBI] human gut metagenome; human gut
3102
3196
+
SeC
TCA
[ENA]
¢þ
>WENV182822427
OKBI01000722
[OKBI] human gut metagenome; human gut
3224
3299
+
Gly
GCC
[ENA]
¢þ
>WENV182822428
OKBI01000722
[OKBI] human gut metagenome; human gut
3340
3413
+
Cys
GCA
[ENA]
¢þ
>WENV182822429
OKBI01000722
[OKBI] human gut metagenome; human gut
3426
3512
+
Leu
TAA
[ENA]
¢þ
>WENV182822435
OKBI01000800
[OKBI] human gut metagenome; human gut
3496
3421
-
Ile2
CAT
[ENA]
¢þ
>WENV182822416
OKBI01000272
[OKBI] human gut metagenome; human gut
3718
3805
+
Ser
TGA
[ENA]
¢þ
>WENV182822411
OKBI01000220
[OKBI] human gut metagenome; human gut
4054
3968
-
Leu
GAG
[ENA]
¢þ
>WENV182822396
OKBI01000021
[OKBI] human gut metagenome; human gut
4303
4229
-
Arg
CCT
[ENA]
¢þ
>WENV182822421
OKBI01000491
[OKBI] human gut metagenome; human gut
4549
4622
+
Gly
CCC
[ENA]
¢þ
>WENV182822392
OKBI01000012
[OKBI] human gut metagenome; human gut
4623
4699
+
Arg
CCG
[ENA]
¢þ
>WENV182822414
OKBI01000234
[OKBI] human gut metagenome; human gut
4740
4826
+
Leu
GAG
[ENA]
¢þ
>WENV182822393
OKBI01000012
[OKBI] human gut metagenome; human gut
4758
4833
+
His
GTG
[ENA]
¢þ
>WENV182822394
OKBI01000012
[OKBI] human gut metagenome; human gut
4854
4940
+
Leu
CAG
[ENA]
¢þ
>WENV182822422
OKBI01000500
[OKBI] human gut metagenome; human gut
4867
4792
-
Asn
GTT
[ENA]
¢þ
>WENV182822395
OKBI01000012
[OKBI] human gut metagenome; human gut
4983
5059
+
Pro
TGG
[ENA]
¢þ
>WENV182822417
OKBI01000381
[OKBI] human gut metagenome; human gut
5009
5082
+
Gly
CCC
[ENA]
¢þ
>WENV182822408
OKBI01000169
[OKBI] human gut metagenome; human gut
5214
5139
-
Asn
GTT
[ENA]
¢þ
>WENV182822420
OKBI01000445
[OKBI] human gut metagenome; human gut
5388
5299
-
Ser
CGA
[ENA]
¢þ
>WENV182822418
OKBI01000388
[OKBI] human gut metagenome; human gut
5415
5321
-
SeC
TCA
[ENA]
¢þ
>WENV182822424
OKBI01000575
[OKBI] human gut metagenome; human gut
5553
5477
-
Pro
GGG
[ENA]
¢þ
>WENV182822399
OKBI01000097
[OKBI] human gut metagenome; human gut
6317
6403
+
Leu
CAG
[ENA]
¢þ
>WENV182822398
OKBI01000032
[OKBI] human gut metagenome; human gut
6370
6446
+
Arg
TCT
[ENA]
¢þ
>WENV182822419
OKBI01000417
[OKBI] human gut metagenome; human gut
6609
6534
-
Trp
CCA
[ENA]
¢þ
>WENV182822413
OKBI01000232
[OKBI] human gut metagenome; human gut
6705
6630
-
Phe
GAA
[ENA]
¢þ
>WENV182822406
OKBI01000169
[OKBI] human gut metagenome; human gut
6963
7038
+
Asn
GTT
[ENA]
¢þ
>WENV182822415
OKBI01000270
[OKBI] human gut metagenome; human gut
8203
8127
-
Val
GAC
[ENA]
¢þ
>WENV182822405
OKBI01000162
[OKBI] human gut metagenome; human gut
8850
8926
+
Arg
TCT
[ENA]
¢þ
>WENV182822388
OKBI01000001
[OKBI] human gut metagenome; human gut
9208
9121
-
Ser
GGA
[ENA]
¢þ
>WENV182822407
OKBI01000169
[OKBI] human gut metagenome; human gut
9372
9447
+
Asn
GTT
[ENA]
¢þ
>WENV182822397
OKBI01000029
[OKBI] human gut metagenome; human gut
13070
13146
+
Pro
CGG
[ENA]
¢þ
>WENV182822390
OKBI01000007
[OKBI] human gut metagenome; human gut
20405
20480
+
Phe
GAA
[ENA]
¢þ
>WENV182822391
OKBI01000011
[OKBI] human gut metagenome; human gut
20902
20818
-
Leu
CAA
[ENA]
¢þ
>WENV182822389
OKBI01000002
[OKBI] human gut metagenome; human gut
28249
28323
+
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK