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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA gene List
[OKBL] human gut metagenome; human gut
HIT:
107 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182822554
OKBL01000025
[OKBL] human gut metagenome; human gut
2
78
+
Pro
TGG
[ENA]
¢þ
>WENV182822620
OKBL01000238
[OKBL] human gut metagenome; human gut
5
79
+
Gln
CTG
[ENA]
¢þ
>WENV182822639
OKBL01000557
[OKBL] human gut metagenome; human gut
65
150
+
Leu
GAG
[ENA]
¢þ
>WENV182822603
OKBL01000175
[OKBL] human gut metagenome; human gut
80
5
-
Lys
TTT
[ENA]
¢þ
>WENV182822636
OKBL01000478
[OKBL] human gut metagenome; human gut
103
178
+
Trp
CCA
[ENA]
¢þ
>WENV182822587
OKBL01000116
[OKBL] human gut metagenome; human gut
103
179
+
Asp
GTC
[ENA]
¢þ
>WENV182822621
OKBL01000238
[OKBL] human gut metagenome; human gut
114
188
+
Gln
CTG
[ENA]
¢þ
>WENV182822635
OKBL01000449
[OKBL] human gut metagenome; human gut
134
46
-
Ser
TGA
[ENA]
¢þ
>WENV182822627
OKBL01000293
[OKBL] human gut metagenome; human gut
158
83
-
Lys
TTT
[ENA]
¢þ
>WENV182822602
OKBL01000175
[OKBL] human gut metagenome; human gut
159
84
-
Val
TAC
[ENA]
¢þ
>WENV182822579
OKBL01000092
[OKBL] human gut metagenome; human gut
180
105
-
Gly
GCC
[ENA]
¢þ
>WENV182822646
OKBL01001283
[OKBL] human gut metagenome; human gut
185
261
+
Ile
GAT
[ENA]
¢þ
>WENV182822576
OKBL01000071
[OKBL] human gut metagenome; human gut
194
118
-
Arg
CCG
[ENA]
¢þ
>WENV182822566
OKBL01000040
[OKBL] human gut metagenome; human gut
200
276
+
Arg
ACG
[ENA]
¢þ
>WENV182822634
OKBL01000441
[OKBL] human gut metagenome; human gut
221
137
-
Tyr
GTA
[ENA]
¢þ
>WENV182822643
OKBL01000938
[OKBL] human gut metagenome; human gut
232
308
+
Pro
TGG
[ENA]
¢þ
>WENV182822594
OKBL01000148
[OKBL] human gut metagenome; human gut
243
319
+
Arg
ACG
[ENA]
¢þ
>WENV182822600
OKBL01000171
[OKBL] human gut metagenome; human gut
244
168
-
Pro
CGG
[ENA]
¢þ
>WENV182822563
OKBL01000033
[OKBL] human gut metagenome; human gut
247
173
-
Thr
TGT
[ENA]
¢þ
>WENV182822544
OKBL01000005
[OKBL] human gut metagenome; human gut
247
173
-
Thr
TGT
[ENA]
¢þ
>WENV182822633
OKBL01000441
[OKBL] human gut metagenome; human gut
307
232
-
Thr
TGT
[ENA]
¢þ
>WENV182822614
OKBL01000200
[OKBL] human gut metagenome; human gut
311
235
-
Met
CAT
[ENA]
¢þ
>WENV182822644
OKBL01000938
[OKBL] human gut metagenome; human gut
319
392
+
Gly
TCC
[ENA]
¢þ
>WENV182822562
OKBL01000033
[OKBL] human gut metagenome; human gut
327
253
-
Gly
TCC
[ENA]
¢þ
>WENV182822543
OKBL01000005
[OKBL] human gut metagenome; human gut
328
253
-
Phe
GAA
[ENA]
¢þ
>WENV182822567
OKBL01000040
[OKBL] human gut metagenome; human gut
338
414
+
Arg
ACG
[ENA]
¢þ
>WENV182822601
OKBL01000175
[OKBL] human gut metagenome; human gut
360
285
-
Lys
TTT
[ENA]
¢þ
>WENV182822625
OKBL01000249
[OKBL] human gut metagenome; human gut
387
312
-
Lys
TTT
[ENA]
¢þ
>WENV182822596
OKBL01000164
[OKBL] human gut metagenome; human gut
387
462
+
Trp
CCA
[ENA]
¢þ
>WENV182822613
OKBL01000200
[OKBL] human gut metagenome; human gut
392
317
-
Thr
GGT
[ENA]
¢þ
>WENV182822647
OKBL01001283
[OKBL] human gut metagenome; human gut
392
467
+
Ala
TGC
[ENA]
¢þ
>WENV182822561
OKBL01000033
[OKBL] human gut metagenome; human gut
407
333
-
Asn
GTT
[ENA]
¢þ
>WENV182822624
OKBL01000249
[OKBL] human gut metagenome; human gut
466
392
-
Gln
TTG
[ENA]
¢þ
>WENV182822645
OKBL01000938
[OKBL] human gut metagenome; human gut
494
570
+
Arg
TCT
[ENA]
¢þ
>WENV182822612
OKBL01000200
[OKBL] human gut metagenome; human gut
499
424
-
fMet
CAT
[ENA]
¢þ
>WENV182822623
OKBL01000249
[OKBL] human gut metagenome; human gut
566
491
-
His
GTG
[ENA]
¢þ
>WENV182822597
OKBL01000164
[OKBL] human gut metagenome; human gut
575
651
+
Arg
ACG
[ENA]
¢þ
>WENV182822611
OKBL01000200
[OKBL] human gut metagenome; human gut
589
505
-
Tyr
GTA
[ENA]
¢þ
>WENV182822638
OKBL01000497
[OKBL] human gut metagenome; human gut
616
706
+
Ser
GCT
[ENA]
¢þ
>WENV182822568
OKBL01000040
[OKBL] human gut metagenome; human gut
643
719
+
Arg
ACG
[ENA]
¢þ
>WENV182822610
OKBL01000200
[OKBL] human gut metagenome; human gut
675
600
-
Thr
TGT
[ENA]
¢þ
>WENV182822584
OKBL01000103
[OKBL] human gut metagenome; human gut
915
840
-
Phe
GAA
[ENA]
¢þ
>WENV182822642
OKBL01000705
[OKBL] human gut metagenome; human gut
1089
1016
-
Gly
CCC
[ENA]
¢þ
>WENV182822641
OKBL01000657
[OKBL] human gut metagenome; human gut
1104
1178
+
Arg
CCT
[ENA]
¢þ
>WENV182822604
OKBL01000178
[OKBL] human gut metagenome; human gut
1249
1159
-
Ser
CGA
[ENA]
¢þ
>WENV182822575
OKBL01000067
[OKBL] human gut metagenome; human gut
1594
1505
-
Ser
CGA
[ENA]
¢þ
>WENV182822640
OKBL01000559
[OKBL] human gut metagenome; human gut
2174
2084
-
Ser
GGA
[ENA]
¢þ
>WENV182822632
OKBL01000424
[OKBL] human gut metagenome; human gut
2513
2588
+
Ile2
CAT
[ENA]
¢þ
>WENV182822592
OKBL01000143
[OKBL] human gut metagenome; human gut
2515
2590
+
Ile2
CAT
[ENA]
¢þ
>WENV182822571
OKBL01000067
[OKBL] human gut metagenome; human gut
2586
2661
+
Asn
GTT
[ENA]
¢þ
>WENV182822585
OKBL01000113
[OKBL] human gut metagenome; human gut
2910
2997
+
Ser
GGA
[ENA]
¢þ
>WENV182822629
OKBL01000366
[OKBL] human gut metagenome; human gut
3120
3045
-
Lys
CTT
[ENA]
¢þ
>WENV182822637
OKBL01000482
[OKBL] human gut metagenome; human gut
3396
3321
-
Trp
CCA
[ENA]
¢þ
>WENV182822626
OKBL01000275
[OKBL] human gut metagenome; human gut
3673
3598
-
Thr
CGT
[ENA]
¢þ
>WENV182822622
OKBL01000243
[OKBL] human gut metagenome; human gut
4279
4204
-
Asn
GTT
[ENA]
¢þ
>WENV182822617
OKBL01000226
[OKBL] human gut metagenome; human gut
4622
4708
+
Leu
GAG
[ENA]
¢þ
>WENV182822599
OKBL01000165
[OKBL] human gut metagenome; human gut
5011
4937
-
Arg
CCG
[ENA]
¢þ
>WENV182822631
OKBL01000390
[OKBL] human gut metagenome; human gut
5500
5425
-
Lys
TTT
[ENA]
¢þ
>WENV182822630
OKBL01000383
[OKBL] human gut metagenome; human gut
5828
5753
-
Lys
TTT
[ENA]
¢þ
>WENV182822560
OKBL01000032
[OKBL] human gut metagenome; human gut
5871
5784
-
Ser
TGA
[ENA]
¢þ
>WENV182822628
OKBL01000341
[OKBL] human gut metagenome; human gut
7243
7168
-
Gly
GCC
[ENA]
¢þ
>WENV182822616
OKBL01000223
[OKBL] human gut metagenome; human gut
7330
7254
-
fMet
CAT
[ENA]
¢þ
>WENV182822593
OKBL01000145
[OKBL] human gut metagenome; human gut
7350
7277
-
Gly
CCC
[ENA]
¢þ
>WENV182822572
OKBL01000067
[OKBL] human gut metagenome; human gut
7826
7901
+
Asn
GTT
[ENA]
¢þ
>WENV182822618
OKBL01000226
[OKBL] human gut metagenome; human gut
8639
8715
+
fMet
CAT
[ENA]
¢þ
>WENV182822598
OKBL01000164
[OKBL] human gut metagenome; human gut
8895
8979
+
Leu
TAG
[ENA]
¢þ
>WENV182822615
OKBL01000223
[OKBL] human gut metagenome; human gut
9203
9117
-
Leu
GAG
[ENA]
¢þ
>WENV182822559
OKBL01000029
[OKBL] human gut metagenome; human gut
9422
9498
+
Asp
GTC
[ENA]
¢þ
>WENV182822588
OKBL01000116
[OKBL] human gut metagenome; human gut
9531
9607
+
Asp
GTC
[ENA]
¢þ
>WENV182822619
OKBL01000234
[OKBL] human gut metagenome; human gut
12880
12955
+
Gly
GCC
[ENA]
¢þ
>WENV182822574
OKBL01000067
[OKBL] human gut metagenome; human gut
16824
16749
-
Asn
GTT
[ENA]
¢þ
>WENV182822605
OKBL01000183
[OKBL] human gut metagenome; human gut
16871
16946
+
Asp
GTC
[ENA]
¢þ
>WENV182822606
OKBL01000183
[OKBL] human gut metagenome; human gut
16952
17027
+
Phe
GAA
[ENA]
¢þ
>WENV182822581
OKBL01000097
[OKBL] human gut metagenome; human gut
16963
16891
-
Arg
CCT
[ENA]
¢þ
>WENV182822607
OKBL01000183
[OKBL] human gut metagenome; human gut
17035
17109
+
Gly
GCC
[ENA]
¢þ
>WENV182822608
OKBL01000183
[OKBL] human gut metagenome; human gut
17119
17193
+
Cys
GCA
[ENA]
¢þ
>WENV182822609
OKBL01000183
[OKBL] human gut metagenome; human gut
17208
17296
+
Leu
TAA
[ENA]
¢þ
>WENV182822573
OKBL01000067
[OKBL] human gut metagenome; human gut
18582
18657
+
Asn
GTT
[ENA]
¢þ
>WENV182822595
OKBL01000150
[OKBL] human gut metagenome; human gut
19641
19716
+
Asn
GTT
[ENA]
¢þ
>WENV182822542
OKBL01000005
[OKBL] human gut metagenome; human gut
19916
19840
-
Arg
TCT
[ENA]
¢þ
>WENV182822591
OKBL01000129
[OKBL] human gut metagenome; human gut
26323
26417
+
SeC
TCA
[ENA]
¢þ
>WENV182822545
OKBL01000007
[OKBL] human gut metagenome; human gut
27546
27470
-
Pro
GGG
[ENA]
¢þ
>WENV182822553
OKBL01000016
[OKBL] human gut metagenome; human gut
27801
27874
+
Gly
CCC
[ENA]
¢þ
>WENV182822590
OKBL01000117
[OKBL] human gut metagenome; human gut
30306
30389
+
Leu
CAA
[ENA]
¢þ
>WENV182822589
OKBL01000116
[OKBL] human gut metagenome; human gut
30992
31067
+
Thr
CGT
[ENA]
¢þ
>WENV182822586
OKBL01000113
[OKBL] human gut metagenome; human gut
31266
31179
-
Ser
TGA
[ENA]
¢þ
>WENV182822564
OKBL01000034
[OKBL] human gut metagenome; human gut
32881
32805
-
Arg
TCT
[ENA]
¢þ
>WENV182822583
OKBL01000103
[OKBL] human gut metagenome; human gut
34104
34179
+
Gly
GCC
[ENA]
¢þ
>WENV182822582
OKBL01000101
[OKBL] human gut metagenome; human gut
34644
34720
+
Arg
CCG
[ENA]
¢þ
>WENV182822578
OKBL01000088
[OKBL] human gut metagenome; human gut
35223
35297
+
Ile2
CAT
[ENA]
¢þ
>WENV182822580
OKBL01000093
[OKBL] human gut metagenome; human gut
36414
36488
+
Arg
TCT
[ENA]
¢þ
>WENV182822570
OKBL01000061
[OKBL] human gut metagenome; human gut
36839
36933
+
SeC
TCA
[ENA]
¢þ
>WENV182822577
OKBL01000085
[OKBL] human gut metagenome; human gut
40266
40342
+
Met
CAT
[ENA]
¢þ
>WENV182822546
OKBL01000010
[OKBL] human gut metagenome; human gut
43390
43303
-
Ser
TGA
[ENA]
¢þ
>WENV182822551
OKBL01000012
[OKBL] human gut metagenome; human gut
44654
44729
+
Phe
GAA
[ENA]
¢þ
>WENV182822565
OKBL01000038
[OKBL] human gut metagenome; human gut
52087
52162
+
Phe
GAA
[ENA]
¢þ
>WENV182822569
OKBL01000059
[OKBL] human gut metagenome; human gut
52907
52983
+
fMet
CAT
[ENA]
¢þ
>WENV182822552
OKBL01000013
[OKBL] human gut metagenome; human gut
61989
61913
-
Pro
GGG
[ENA]
¢þ
>WENV182822555
OKBL01000025
[OKBL] human gut metagenome; human gut
71536
71612
+
Pro
TGG
[ENA]
¢þ
>WENV182822556
OKBL01000025
[OKBL] human gut metagenome; human gut
79264
79339
+
Thr
TGT
[ENA]
¢þ
>WENV182822557
OKBL01000025
[OKBL] human gut metagenome; human gut
79348
79432
+
Tyr
GTA
[ENA]
¢þ
>WENV182822558
OKBL01000025
[OKBL] human gut metagenome; human gut
79549
79623
+
Gly
TCC
[ENA]
¢þ
>WENV182822547
OKBL01000011
[OKBL] human gut metagenome; human gut
89411
89485
+
Arg
CCT
[ENA]
¢þ
>WENV182822541
OKBL01000001
[OKBL] human gut metagenome; human gut
93418
93334
-
Leu
CAA
[ENA]
¢þ
>WENV182822550
OKBL01000011
[OKBL] human gut metagenome; human gut
109883
109808
-
Ala
GGC
[ENA]
¢þ
>WENV182822549
OKBL01000011
[OKBL] human gut metagenome; human gut
109999
109924
-
Ala
GGC
[ENA]
¢þ
>WENV182822548
OKBL01000011
[OKBL] human gut metagenome; human gut
112693
112768
+
Val
TAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK