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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OKCL] human gut metagenome; human gut
HIT:
52 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182825660
OKCL01001672
[OKCL] human gut metagenome; human gut
113
30
-
Leu
CAA
[ENA]
¢þ
>WENV182825649
OKCL01001165
[OKCL] human gut metagenome; human gut
171
95
-
Val
GAC
[ENA]
¢þ
>WENV182825659
OKCL01001378
[OKCL] human gut metagenome; human gut
192
117
-
Ala
GGC
[ENA]
¢þ
>WENV182825611
OKCL01000002
[OKCL] human gut metagenome; human gut
195
119
-
Arg
ACG
[ENA]
¢þ
>WENV182825648
OKCL01001165
[OKCL] human gut metagenome; human gut
252
176
-
Val
GAC
[ENA]
¢þ
>WENV182825646
OKCL01001009
[OKCL] human gut metagenome; human gut
256
181
-
Lys
CTT
[ENA]
¢þ
>WENV182825625
OKCL01000187
[OKCL] human gut metagenome; human gut
269
181
-
Ser
TGA
[ENA]
¢þ
>WENV182825610
OKCL01000002
[OKCL] human gut metagenome; human gut
292
200
-
Ser
GCT
[ENA]
¢þ
>WENV182825658
OKCL01001378
[OKCL] human gut metagenome; human gut
308
233
-
Ala
GGC
[ENA]
¢þ
>WENV182825641
OKCL01000707
[OKCL] human gut metagenome; human gut
435
521
+
Leu
CAG
[ENA]
¢þ
>WENV182825643
OKCL01000803
[OKCL] human gut metagenome; human gut
496
586
+
Ser
GCT
[ENA]
¢þ
>WENV182825652
OKCL01001188
[OKCL] human gut metagenome; human gut
533
447
-
Leu
TAA
[ENA]
¢þ
>WENV182825624
OKCL01000182
[OKCL] human gut metagenome; human gut
562
638
+
fMet
CAT
[ENA]
¢þ
>WENV182825657
OKCL01001329
[OKCL] human gut metagenome; human gut
563
636
+
Gly
CCC
[ENA]
¢þ
>WENV182825618
OKCL01000112
[OKCL] human gut metagenome; human gut
563
638
+
Phe
GAA
[ENA]
¢þ
>WENV182825656
OKCL01001318
[OKCL] human gut metagenome; human gut
565
491
-
Gln
CTG
[ENA]
¢þ
>WENV182825651
OKCL01001188
[OKCL] human gut metagenome; human gut
618
545
-
Cys
GCA
[ENA]
¢þ
>WENV182825661
OKCL01002200
[OKCL] human gut metagenome; human gut
640
566
-
Arg
TCT
[ENA]
¢þ
>WENV182825619
OKCL01000112
[OKCL] human gut metagenome; human gut
644
718
+
Thr
TGT
[ENA]
¢þ
>WENV182825655
OKCL01001318
[OKCL] human gut metagenome; human gut
674
600
-
Gln
CTG
[ENA]
¢þ
>WENV182825650
OKCL01001188
[OKCL] human gut metagenome; human gut
745
670
-
Gly
GCC
[ENA]
¢þ
>WENV182825615
OKCL01000065
[OKCL] human gut metagenome; human gut
768
854
+
Leu
GAG
[ENA]
¢þ
>WENV182825654
OKCL01001318
[OKCL] human gut metagenome; human gut
792
716
-
Met
CAT
[ENA]
¢þ
>WENV182825639
OKCL01000611
[OKCL] human gut metagenome; human gut
846
921
+
Phe
GAA
[ENA]
¢þ
>WENV182825621
OKCL01000155
[OKCL] human gut metagenome; human gut
908
995
+
Ser
TGA
[ENA]
¢þ
>WENV182825614
OKCL01000064
[OKCL] human gut metagenome; human gut
920
836
-
Leu
CAA
[ENA]
¢þ
>WENV182825642
OKCL01000732
[OKCL] human gut metagenome; human gut
981
906
-
Glu
TTC
[ENA]
¢þ
>WENV182825644
OKCL01000828
[OKCL] human gut metagenome; human gut
1247
1157
-
Ser
CGA
[ENA]
¢þ
>WENV182825629
OKCL01000335
[OKCL] human gut metagenome; human gut
1350
1274
-
Pro
TGG
[ENA]
¢þ
>WENV182825628
OKCL01000335
[OKCL] human gut metagenome; human gut
1481
1395
-
Leu
CAG
[ENA]
¢þ
>WENV182825653
OKCL01001223
[OKCL] human gut metagenome; human gut
1542
1617
+
Val
TAC
[ENA]
¢þ
>WENV182825627
OKCL01000335
[OKCL] human gut metagenome; human gut
1578
1503
-
His
GTG
[ENA]
¢þ
>WENV182825640
OKCL01000673
[OKCL] human gut metagenome; human gut
1608
1532
-
Asp
GTC
[ENA]
¢þ
>WENV182825626
OKCL01000335
[OKCL] human gut metagenome; human gut
1722
1646
-
Arg
CCG
[ENA]
¢þ
>WENV182825647
OKCL01001022
[OKCL] human gut metagenome; human gut
1828
1902
+
Arg
CCG
[ENA]
¢þ
>WENV182825638
OKCL01000603
[OKCL] human gut metagenome; human gut
2032
2107
+
Ile2
CAT
[ENA]
¢þ
>WENV182825645
OKCL01000938
[OKCL] human gut metagenome; human gut
2107
2182
+
Thr
TGT
[ENA]
¢þ
>WENV182825633
OKCL01000437
[OKCL] human gut metagenome; human gut
2337
2411
+
Gly
GCC
[ENA]
¢þ
>WENV182825634
OKCL01000437
[OKCL] human gut metagenome; human gut
2419
2494
+
Asn
GTT
[ENA]
¢þ
>WENV182825635
OKCL01000437
[OKCL] human gut metagenome; human gut
2498
2573
+
Lys
TTT
[ENA]
¢þ
>WENV182825636
OKCL01000437
[OKCL] human gut metagenome; human gut
2579
2653
+
Glu
TTC
[ENA]
¢þ
>WENV182825613
OKCL01000059
[OKCL] human gut metagenome; human gut
2629
2705
+
Pro
GGG
[ENA]
¢þ
>WENV182825616
OKCL01000065
[OKCL] human gut metagenome; human gut
2641
2717
+
fMet
CAT
[ENA]
¢þ
>WENV182825637
OKCL01000437
[OKCL] human gut metagenome; human gut
2657
2732
+
Val
TAC
[ENA]
¢þ
>WENV182825632
OKCL01000386
[OKCL] human gut metagenome; human gut
2744
2838
+
SeC
TCA
[ENA]
¢þ
>WENV182825631
OKCL01000358
[OKCL] human gut metagenome; human gut
3980
3904
-
Arg
TCT
[ENA]
¢þ
>WENV182825630
OKCL01000346
[OKCL] human gut metagenome; human gut
4186
4261
+
Thr
CGT
[ENA]
¢þ
>WENV182825623
OKCL01000162
[OKCL] human gut metagenome; human gut
4425
4350
-
Ala
TGC
[ENA]
¢þ
>WENV182825622
OKCL01000162
[OKCL] human gut metagenome; human gut
4512
4436
-
Ile
GAT
[ENA]
¢þ
>WENV182825620
OKCL01000130
[OKCL] human gut metagenome; human gut
6176
6104
-
Arg
CCT
[ENA]
¢þ
>WENV182825617
OKCL01000079
[OKCL] human gut metagenome; human gut
8029
8104
+
Phe
GAA
[ENA]
¢þ
>WENV182825612
OKCL01000018
[OKCL] human gut metagenome; human gut
10626
10701
+
Lys
TTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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