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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKCY] human gut metagenome; human gut
HIT:
47 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182827355
OKCY01005874
[OKCY] human gut metagenome; human gut
100
11
-
Ser
CGA
[ENA]
¢þ
>WENV182827354
OKCY01005681
[OKCY] human gut metagenome; human gut
293
366
+
Gly
CCC
[ENA]
¢þ
>WENV182827353
OKCY01004138
[OKCY] human gut metagenome; human gut
355
280
-
Thr
CGT
[ENA]
¢þ
>WENV182827345
OKCY01001107
[OKCY] human gut metagenome; human gut
641
724
+
Ser
AGA
[ENA]
¢þ
>WENV182827328
OKCY01000408
[OKCY] human gut metagenome; human gut
798
725
-
Asp
GTC
[ENA]
¢þ
>WENV182827320
OKCY01000097
[OKCY] human gut metagenome; human gut
838
912
+
Lys
TTT
[ENA]
¢þ
>WENV182827329
OKCY01000477
[OKCY] human gut metagenome; human gut
900
974
+
Met
CAT
[ENA]
¢þ
>WENV182827351
OKCY01002421
[OKCY] human gut metagenome; human gut
932
862
-
Gly
GCC
[ENA]
¢þ
>WENV182827352
OKCY01002756
[OKCY] human gut metagenome; human gut
1104
1180
+
fMet
CAT
[ENA]
¢þ
>WENV182827343
OKCY01001051
[OKCY] human gut metagenome; human gut
1245
1170
-
Val
AAC
[ENA]
¢þ
>WENV182827338
OKCY01000652
[OKCY] human gut metagenome; human gut
1276
1346
+
Arg
TCT
[ENA]
¢þ
>WENV182827350
OKCY01002145
[OKCY] human gut metagenome; human gut
1292
1362
+
Gly
CCC
[ENA]
¢þ
>WENV182827348
OKCY01001564
[OKCY] human gut metagenome; human gut
1406
1479
+
Asp
GTC
[ENA]
¢þ
>WENV182827339
OKCY01000652
[OKCY] human gut metagenome; human gut
1437
1511
+
Sup
TCA
[ENA]
¢þ
>WENV182827340
OKCY01000652
[OKCY] human gut metagenome; human gut
1509
1579
+
Phe
GAA
[ENA]
¢þ
>WENV182827335
OKCY01000587
[OKCY] human gut metagenome; human gut
1538
1468
-
Asn
GTT
[ENA]
¢þ
>WENV182827349
OKCY01001698
[OKCY] human gut metagenome; human gut
1638
1711
+
Thr
TGT
[ENA]
¢þ
>WENV182827315
OKCY01000093
[OKCY] human gut metagenome; human gut
1915
1986
+
Ile2
CAT
[ENA]
¢þ
>WENV182827347
OKCY01001493
[OKCY] human gut metagenome; human gut
1915
1986
+
Met
CAT
[ENA]
¢þ
>WENV182827327
OKCY01000408
[OKCY] human gut metagenome; human gut
2234
2307
+
Asp
GTC
[ENA]
¢þ
>WENV182827334
OKCY01000587
[OKCY] human gut metagenome; human gut
2368
2298
-
Ala
TGC
[ENA]
¢þ
>WENV182827341
OKCY01000732
[OKCY] human gut metagenome; human gut
2661
2733
+
Thr
AGT
[ENA]
¢þ
>WENV182827344
OKCY01001085
[OKCY] human gut metagenome; human gut
2948
2874
-
Ala
AGC
[ENA]
¢þ
>WENV182827342
OKCY01000839
[OKCY] human gut metagenome; human gut
2948
2878
-
Gly
GCC
[ENA]
¢þ
>WENV182827346
OKCY01001194
[OKCY] human gut metagenome; human gut
3108
3034
-
Ala
AGC
[ENA]
¢þ
>WENV182827310
OKCY01000026
[OKCY] human gut metagenome; human gut
3757
3840
+
Ser
TGA
[ENA]
¢þ
>WENV182827323
OKCY01000130
[OKCY] human gut metagenome; human gut
3776
3691
-
Ile
AAT
[ENA]
¢þ
>WENV182827330
OKCY01000500
[OKCY] human gut metagenome; human gut
4159
4231
+
Gly
TCC
[ENA]
¢þ
>WENV182827337
OKCY01000638
[OKCY] human gut metagenome; human gut
4220
4145
-
Ala
TGC
[ENA]
¢þ
>WENV182827331
OKCY01000500
[OKCY] human gut metagenome; human gut
4393
4467
+
Pro
TGG
[ENA]
¢þ
>WENV182827336
OKCY01000638
[OKCY] human gut metagenome; human gut
4411
4335
-
Ile
GAT
[ENA]
¢þ
>WENV182827333
OKCY01000535
[OKCY] human gut metagenome; human gut
5414
5327
-
Gln
TTG
[ENA]
¢þ
>WENV182827332
OKCY01000500
[OKCY] human gut metagenome; human gut
5601
5673
+
Ile
GAT
[ENA]
¢þ
>WENV182827316
OKCY01000093
[OKCY] human gut metagenome; human gut
6598
6669
+
Asp
GTC
[ENA]
¢þ
>WENV182827324
OKCY01000173
[OKCY] human gut metagenome; human gut
7060
7134
+
Lys
TTT
[ENA]
¢þ
>WENV182827326
OKCY01000208
[OKCY] human gut metagenome; human gut
7463
7536
+
Val
CAC
[ENA]
¢þ
>WENV182827325
OKCY01000177
[OKCY] human gut metagenome; human gut
7486
7415
-
Gln
CTG
[ENA]
¢þ
>WENV182827313
OKCY01000073
[OKCY] human gut metagenome; human gut
7660
7588
-
Thr
AGT
[ENA]
¢þ
>WENV182827322
OKCY01000120
[OKCY] human gut metagenome; human gut
8235
8321
+
Ile
AAT
[ENA]
¢þ
>WENV182827314
OKCY01000074
[OKCY] human gut metagenome; human gut
8664
8739
+
Arg
TCT
[ENA]
¢þ
>WENV182827319
OKCY01000093
[OKCY] human gut metagenome; human gut
9208
9136
-
Thr
TGT
[ENA]
¢þ
>WENV182827318
OKCY01000093
[OKCY] human gut metagenome; human gut
9463
9382
-
Leu
TAA
[ENA]
¢þ
>WENV182827312
OKCY01000055
[OKCY] human gut metagenome; human gut
9861
9932
+
Glu
CTC
[ENA]
¢þ
>WENV182827317
OKCY01000093
[OKCY] human gut metagenome; human gut
10138
10212
+
Lys
TTT
[ENA]
¢þ
>WENV182827321
OKCY01000106
[OKCY] human gut metagenome; human gut
10823
10917
+
Arg
ACG
[ENA]
¢þ
>WENV182827311
OKCY01000041
[OKCY] human gut metagenome; human gut
13040
13114
+
Ala
TGC
[ENA]
¢þ
>WENV182827309
OKCY01000002
[OKCY] human gut metagenome; human gut
15016
15088
+
Gly
TCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK