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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKDG] human gut metagenome; human gut
HIT:
66 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182828466
OKDG01000538
[OKDG] human gut metagenome; human gut
24
99
+
Val
TAC
[ENA]
¢þ
>WENV182828457
OKDG01000179
[OKDG] human gut metagenome; human gut
78
3
-
Val
TAC
[ENA]
¢þ
>WENV182828402
OKDG01000001
[OKDG] human gut metagenome; human gut
99
175
+
fMet
CAT
[ENA]
¢þ
>WENV182828421
OKDG01000020
[OKDG] human gut metagenome; human gut
106
181
+
Trp
CCA
[ENA]
¢þ
>WENV182828440
OKDG01000070
[OKDG] human gut metagenome; human gut
119
195
+
Arg
ACG
[ENA]
¢þ
>WENV182828451
OKDG01000150
[OKDG] human gut metagenome; human gut
151
76
-
His
GTG
[ENA]
¢þ
>WENV182828453
OKDG01000175
[OKDG] human gut metagenome; human gut
158
83
-
Lys
TTT
[ENA]
¢þ
>WENV182828456
OKDG01000179
[OKDG] human gut metagenome; human gut
183
108
-
Val
TAC
[ENA]
¢þ
>WENV182828462
OKDG01000228
[OKDG] human gut metagenome; human gut
185
110
-
Ala
TGC
[ENA]
¢þ
>WENV182828450
OKDG01000150
[OKDG] human gut metagenome; human gut
295
219
-
Arg
CCG
[ENA]
¢þ
>WENV182828461
OKDG01000228
[OKDG] human gut metagenome; human gut
298
222
-
Ile
GAT
[ENA]
¢þ
>WENV182828467
OKDG01000688
[OKDG] human gut metagenome; human gut
358
432
+
Arg
CCG
[ENA]
¢þ
>WENV182828460
OKDG01000217
[OKDG] human gut metagenome; human gut
361
286
-
Ala
TGC
[ENA]
¢þ
>WENV182828459
OKDG01000217
[OKDG] human gut metagenome; human gut
448
372
-
Ile
GAT
[ENA]
¢þ
>WENV182828464
OKDG01000330
[OKDG] human gut metagenome; human gut
464
537
+
Ile2
CAT
[ENA]
¢þ
>WENV182828442
OKDG01000095
[OKDG] human gut metagenome; human gut
473
379
-
SeC
TCA
[ENA]
¢þ
>WENV182828465
OKDG01000330
[OKDG] human gut metagenome; human gut
571
660
+
Ser
TGA
[ENA]
¢þ
>WENV182828463
OKDG01000312
[OKDG] human gut metagenome; human gut
584
660
+
Pro
CGG
[ENA]
¢þ
>WENV182828435
OKDG01000049
[OKDG] human gut metagenome; human gut
770
695
-
Phe
GAA
[ENA]
¢þ
>WENV182828446
OKDG01000120
[OKDG] human gut metagenome; human gut
893
817
-
Arg
TCT
[ENA]
¢þ
>WENV182828458
OKDG01000197
[OKDG] human gut metagenome; human gut
1771
1696
-
Gly
GCC
[ENA]
¢þ
>WENV182828447
OKDG01000124
[OKDG] human gut metagenome; human gut
1792
1867
+
Asn
GTT
[ENA]
¢þ
>WENV182828430
OKDG01000036
[OKDG] human gut metagenome; human gut
1820
1747
-
Thr
CGT
[ENA]
¢þ
>WENV182828405
OKDG01000002
[OKDG] human gut metagenome; human gut
2080
1996
-
Leu
CAA
[ENA]
¢þ
>WENV182828445
OKDG01000104
[OKDG] human gut metagenome; human gut
2146
2070
-
Val
GAC
[ENA]
¢þ
>WENV182828444
OKDG01000104
[OKDG] human gut metagenome; human gut
2227
2151
-
Val
GAC
[ENA]
¢þ
>WENV182828454
OKDG01000179
[OKDG] human gut metagenome; human gut
2877
2952
+
Ala
GGC
[ENA]
¢þ
>WENV182828455
OKDG01000179
[OKDG] human gut metagenome; human gut
2994
3069
+
Ala
GGC
[ENA]
¢þ
>WENV182828452
OKDG01000172
[OKDG] human gut metagenome; human gut
3526
3601
+
Trp
CCA
[ENA]
¢þ
>WENV182828448
OKDG01000139
[OKDG] human gut metagenome; human gut
3983
4070
+
Ser
GGA
[ENA]
¢þ
>WENV182828449
OKDG01000139
[OKDG] human gut metagenome; human gut
6901
6988
+
Ser
GGA
[ENA]
¢þ
>WENV182828427
OKDG01000035
[OKDG] human gut metagenome; human gut
10930
11014
+
Tyr
GTA
[ENA]
¢þ
>WENV182828428
OKDG01000035
[OKDG] human gut metagenome; human gut
11049
11133
+
Tyr
GTA
[ENA]
¢þ
>WENV182828436
OKDG01000061
[OKDG] human gut metagenome; human gut
13750
13836
+
Leu
CAG
[ENA]
¢þ
>WENV182828443
OKDG01000103
[OKDG] human gut metagenome; human gut
13818
13742
-
fMet
CAT
[ENA]
¢þ
>WENV182828437
OKDG01000061
[OKDG] human gut metagenome; human gut
13865
13950
+
Leu
CAG
[ENA]
¢þ
>WENV182828438
OKDG01000061
[OKDG] human gut metagenome; human gut
13983
14069
+
Leu
CAG
[ENA]
¢þ
>WENV182828410
OKDG01000013
[OKDG] human gut metagenome; human gut
15037
14961
-
Arg
TCT
[ENA]
¢þ
>WENV182828407
OKDG01000005
[OKDG] human gut metagenome; human gut
15118
15043
-
Ile2
CAT
[ENA]
¢þ
>WENV182828406
OKDG01000003
[OKDG] human gut metagenome; human gut
17928
17841
-
Ser
TGA
[ENA]
¢þ
>WENV182828439
OKDG01000064
[OKDG] human gut metagenome; human gut
18173
18101
-
Arg
CCT
[ENA]
¢þ
>WENV182828441
OKDG01000085
[OKDG] human gut metagenome; human gut
19207
19293
+
Leu
GAG
[ENA]
¢þ
>WENV182828420
OKDG01000018
[OKDG] human gut metagenome; human gut
23850
23776
-
Gln
CTG
[ENA]
¢þ
>WENV182828419
OKDG01000018
[OKDG] human gut metagenome; human gut
23959
23885
-
Gln
CTG
[ENA]
¢þ
>WENV182828418
OKDG01000018
[OKDG] human gut metagenome; human gut
24077
24001
-
Met
CAT
[ENA]
¢þ
>WENV182828417
OKDG01000018
[OKDG] human gut metagenome; human gut
24169
24095
-
Gln
TTG
[ENA]
¢þ
>WENV182828416
OKDG01000018
[OKDG] human gut metagenome; human gut
24276
24202
-
Gln
TTG
[ENA]
¢þ
>WENV182828415
OKDG01000018
[OKDG] human gut metagenome; human gut
24384
24300
-
Leu
TAG
[ENA]
¢þ
>WENV182828414
OKDG01000018
[OKDG] human gut metagenome; human gut
24469
24393
-
Met
CAT
[ENA]
¢þ
>WENV182828429
OKDG01000036
[OKDG] human gut metagenome; human gut
31324
31248
-
Asp
GTC
[ENA]
¢þ
>WENV182828434
OKDG01000048
[OKDG] human gut metagenome; human gut
34756
34681
-
Lys
TTT
[ENA]
¢þ
>WENV182828433
OKDG01000048
[OKDG] human gut metagenome; human gut
34863
34788
-
Lys
TTT
[ENA]
¢þ
>WENV182828431
OKDG01000038
[OKDG] human gut metagenome; human gut
39621
39713
+
Ser
GCT
[ENA]
¢þ
>WENV182828432
OKDG01000038
[OKDG] human gut metagenome; human gut
39718
39794
+
Arg
ACG
[ENA]
¢þ
>WENV182828422
OKDG01000024
[OKDG] human gut metagenome; human gut
41190
41266
+
Pro
TGG
[ENA]
¢þ
>WENV182828409
OKDG01000010
[OKDG] human gut metagenome; human gut
48606
48682
+
Pro
GGG
[ENA]
¢þ
>WENV182828423
OKDG01000024
[OKDG] human gut metagenome; human gut
48904
48979
+
Thr
TGT
[ENA]
¢þ
>WENV182828424
OKDG01000024
[OKDG] human gut metagenome; human gut
48988
49072
+
Tyr
GTA
[ENA]
¢þ
>WENV182828425
OKDG01000024
[OKDG] human gut metagenome; human gut
49189
49263
+
Gly
TCC
[ENA]
¢þ
>WENV182828426
OKDG01000024
[OKDG] human gut metagenome; human gut
49270
49345
+
Thr
GGT
[ENA]
¢þ
>WENV182828408
OKDG01000006
[OKDG] human gut metagenome; human gut
50619
50694
+
Arg
TCT
[ENA]
¢þ
>WENV182828411
OKDG01000014
[OKDG] human gut metagenome; human gut
64819
64894
+
Gly
GCC
[ENA]
¢þ
>WENV182828412
OKDG01000014
[OKDG] human gut metagenome; human gut
64946
65019
+
Cys
GCA
[ENA]
¢þ
>WENV182828413
OKDG01000014
[OKDG] human gut metagenome; human gut
65031
65117
+
Leu
TAA
[ENA]
¢þ
>WENV182828404
OKDG01000001
[OKDG] human gut metagenome; human gut
73498
73425
-
Gly
CCC
[ENA]
¢þ
>WENV182828403
OKDG01000001
[OKDG] human gut metagenome; human gut
166098
166173
+
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK