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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKDN] human gut metagenome; human gut
HIT:
40 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182829216
OKDN01002168
[OKDN] human gut metagenome; human gut
29
101
+
Thr
TGT
[ENA]
¢þ
>WENV182829209
OKDN01001358
[OKDN] human gut metagenome; human gut
64
148
+
Leu
TAG
[ENA]
¢þ
>WENV182829226
OKDN01002351
[OKDN] human gut metagenome; human gut
98
23
-
Thr
TGT
[ENA]
¢þ
>WENV182829213
OKDN01001367
[OKDN] human gut metagenome; human gut
115
40
-
Asn
GTT
[ENA]
¢þ
>WENV182829217
OKDN01002168
[OKDN] human gut metagenome; human gut
122
193
+
Gly
GCC
[ENA]
¢þ
>WENV182829202
OKDN01000549
[OKDN] human gut metagenome; human gut
149
73
-
Arg
CCG
[ENA]
¢þ
>WENV182829225
OKDN01002187
[OKDN] human gut metagenome; human gut
158
242
+
Leu
CAA
[ENA]
¢þ
>WENV182829204
OKDN01000635
[OKDN] human gut metagenome; human gut
172
86
-
Leu
CAG
[ENA]
¢þ
>WENV182829210
OKDN01001358
[OKDN] human gut metagenome; human gut
172
246
+
Gln
TTG
[ENA]
¢þ
>WENV182829228
OKDN01002726
[OKDN] human gut metagenome; human gut
182
256
+
Arg
CCT
[ENA]
¢þ
>WENV182829218
OKDN01002168
[OKDN] human gut metagenome; human gut
199
284
+
Leu
TAA
[ENA]
¢þ
>WENV182829199
OKDN01000399
[OKDN] human gut metagenome; human gut
211
124
-
Ser
TGA
[ENA]
¢þ
>WENV182829203
OKDN01000578
[OKDN] human gut metagenome; human gut
244
168
-
Pro
CGG
[ENA]
¢þ
>WENV182829211
OKDN01001358
[OKDN] human gut metagenome; human gut
270
346
+
Met
CAT
[ENA]
¢þ
>WENV182829207
OKDN01001060
[OKDN] human gut metagenome; human gut
276
201
-
Lys
TTT
[ENA]
¢þ
>WENV182829219
OKDN01002168
[OKDN] human gut metagenome; human gut
298
371
+
Arg
ACG
[ENA]
¢þ
>WENV182829206
OKDN01001060
[OKDN] human gut metagenome; human gut
356
281
-
Val
TAC
[ENA]
¢þ
>WENV182829212
OKDN01001358
[OKDN] human gut metagenome; human gut
394
468
+
Gln
CTG
[ENA]
¢þ
>WENV182829220
OKDN01002168
[OKDN] human gut metagenome; human gut
400
473
+
Pro
TGG
[ENA]
¢þ
>WENV182829229
OKDN01002958
[OKDN] human gut metagenome; human gut
472
547
+
Ala
GGC
[ENA]
¢þ
>WENV182829221
OKDN01002168
[OKDN] human gut metagenome; human gut
479
554
+
Met
CAT
[ENA]
¢þ
>WENV182829227
OKDN01002429
[OKDN] human gut metagenome; human gut
485
401
-
Tyr
GTA
[ENA]
¢þ
>WENV182829208
OKDN01001080
[OKDN] human gut metagenome; human gut
555
649
+
SeC
TCA
[ENA]
¢þ
>WENV182829195
OKDN01000278
[OKDN] human gut metagenome; human gut
562
489
-
Gly
CCC
[ENA]
¢þ
>WENV182829222
OKDN01002168
[OKDN] human gut metagenome; human gut
566
641
+
Ile2
CAT
[ENA]
¢þ
>WENV182829214
OKDN01001647
[OKDN] human gut metagenome; human gut
620
712
+
Ser
GCT
[ENA]
¢þ
>WENV182829223
OKDN01002168
[OKDN] human gut metagenome; human gut
657
746
+
Ser
TGA
[ENA]
¢þ
>WENV182829200
OKDN01000448
[OKDN] human gut metagenome; human gut
668
592
-
Asp
GTC
[ENA]
¢þ
>WENV182829193
OKDN01000135
[OKDN] human gut metagenome; human gut
681
756
+
Gly
GCC
[ENA]
¢þ
>WENV182829215
OKDN01001647
[OKDN] human gut metagenome; human gut
717
793
+
Arg
ACG
[ENA]
¢þ
>WENV182829224
OKDN01002168
[OKDN] human gut metagenome; human gut
766
839
+
fMet
CAT
[ENA]
¢þ
>WENV182829201
OKDN01000452
[OKDN] human gut metagenome; human gut
1085
1160
+
Thr
CGT
[ENA]
¢þ
>WENV182829194
OKDN01000206
[OKDN] human gut metagenome; human gut
1113
1189
+
fMet
CAT
[ENA]
¢þ
>WENV182829205
OKDN01000641
[OKDN] human gut metagenome; human gut
1411
1486
+
Phe
GAA
[ENA]
¢þ
>WENV182829191
OKDN01000090
[OKDN] human gut metagenome; human gut
1540
1626
+
Leu
GAG
[ENA]
¢þ
>WENV182829192
OKDN01000120
[OKDN] human gut metagenome; human gut
1772
1847
+
Glu
TTC
[ENA]
¢þ
>WENV182829196
OKDN01000346
[OKDN] human gut metagenome; human gut
1993
2067
+
Val
TAC
[ENA]
¢þ
>WENV182829197
OKDN01000346
[OKDN] human gut metagenome; human gut
2069
2141
+
Asp
GTC
[ENA]
¢þ
>WENV182829198
OKDN01000346
[OKDN] human gut metagenome; human gut
2169
2241
+
Lys
TTT
[ENA]
¢þ
>WENV182829190
OKDN01000003
[OKDN] human gut metagenome; human gut
6391
6317
-
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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