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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKDT] human gut metagenome; human gut
HIT:
140 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182829810
OKDT01000089
[OKDT] human gut metagenome; human gut
54
129
+
Ile2
CAT
[ENA]
¢þ
>WENV182829795
OKDT01000011
[OKDT] human gut metagenome; human gut
71
147
+
Val
GAC
[ENA]
¢þ
>WENV182829925
OKDT01003461
[OKDT] human gut metagenome; human gut
77
1
-
Met
CAT
[ENA]
¢þ
>WENV182829889
OKDT01001741
[OKDT] human gut metagenome; human gut
101
175
+
Ala
TGC
[ENA]
¢þ
>WENV182829922
OKDT01002901
[OKDT] human gut metagenome; human gut
107
182
+
Trp
CCA
[ENA]
¢þ
>WENV182829929
OKDT01004519
[OKDT] human gut metagenome; human gut
151
59
-
Ser
GCT
[ENA]
¢þ
>WENV182829857
OKDT01000399
[OKDT] human gut metagenome; human gut
184
98
-
Leu
GAG
[ENA]
¢þ
>WENV182829924
OKDT01003279
[OKDT] human gut metagenome; human gut
222
151
-
Trp
CCA
[ENA]
¢þ
>WENV182829886
OKDT01001204
[OKDT] human gut metagenome; human gut
244
168
-
Pro
CGG
[ENA]
¢þ
>WENV182829928
OKDT01004372
[OKDT] human gut metagenome; human gut
269
194
-
Arg
TCT
[ENA]
¢þ
>WENV182829854
OKDT01000394
[OKDT] human gut metagenome; human gut
503
428
-
Thr
CGT
[ENA]
¢þ
>WENV182829918
OKDT01002209
[OKDT] human gut metagenome; human gut
577
502
-
Arg
TCT
[ENA]
¢þ
>WENV182829906
OKDT01001861
[OKDT] human gut metagenome; human gut
625
542
-
Leu
CAA
[ENA]
¢þ
>WENV182829887
OKDT01001332
[OKDT] human gut metagenome; human gut
640
566
-
Arg
TCT
[ENA]
¢þ
>WENV182829905
OKDT01001861
[OKDT] human gut metagenome; human gut
708
635
-
Gln
TTG
[ENA]
¢þ
>WENV182829874
OKDT01001018
[OKDT] human gut metagenome; human gut
764
691
-
Gly
CCC
[ENA]
¢þ
>WENV182829926
OKDT01003716
[OKDT] human gut metagenome; human gut
798
723
-
Trp
CCA
[ENA]
¢þ
>WENV182829871
OKDT01000926
[OKDT] human gut metagenome; human gut
816
891
+
Asn
GTT
[ENA]
¢þ
>WENV182829904
OKDT01001861
[OKDT] human gut metagenome; human gut
838
756
-
Tyr
GTA
[ENA]
¢þ
>WENV182829927
OKDT01003809
[OKDT] human gut metagenome; human gut
855
768
-
Ser
GGA
[ENA]
¢þ
>WENV182829797
OKDT01000022
[OKDT] human gut metagenome; human gut
859
946
+
Ser
TGA
[ENA]
¢þ
>WENV182829903
OKDT01001861
[OKDT] human gut metagenome; human gut
928
856
-
Phe
GAA
[ENA]
¢þ
>WENV182829902
OKDT01001861
[OKDT] human gut metagenome; human gut
1006
931
-
fMet
CAT
[ENA]
¢þ
>WENV182829838
OKDT01000241
[OKDT] human gut metagenome; human gut
1040
968
-
Thr
GGT
[ENA]
¢þ
>WENV182829921
OKDT01002648
[OKDT] human gut metagenome; human gut
1088
1012
-
Arg
TCT
[ENA]
¢þ
>WENV182829901
OKDT01001861
[OKDT] human gut metagenome; human gut
1114
1025
-
Ser
TGA
[ENA]
¢þ
>WENV182829919
OKDT01002556
[OKDT] human gut metagenome; human gut
1126
1201
+
Glu
TTC
[ENA]
¢þ
>WENV182829923
OKDT01002951
[OKDT] human gut metagenome; human gut
1129
1039
-
Ser
GCT
[ENA]
¢þ
>WENV182829900
OKDT01001861
[OKDT] human gut metagenome; human gut
1205
1130
-
Ile2
CAT
[ENA]
¢þ
>WENV182829911
OKDT01001927
[OKDT] human gut metagenome; human gut
1228
1301
+
Ile2
CAT
[ENA]
¢þ
>WENV182829801
OKDT01000029
[OKDT] human gut metagenome; human gut
1274
1189
-
Leu
AAG
[ENA]
¢þ
>WENV182829899
OKDT01001861
[OKDT] human gut metagenome; human gut
1292
1217
-
Met
CAT
[ENA]
¢þ
>WENV182829912
OKDT01001927
[OKDT] human gut metagenome; human gut
1335
1424
+
Ser
TGA
[ENA]
¢þ
>WENV182829920
OKDT01002557
[OKDT] human gut metagenome; human gut
1343
1417
+
Val
TAC
[ENA]
¢þ
>WENV182829898
OKDT01001861
[OKDT] human gut metagenome; human gut
1371
1298
-
Pro
TGG
[ENA]
¢þ
>WENV182829839
OKDT01000248
[OKDT] human gut metagenome; human gut
1376
1460
+
Leu
CAA
[ENA]
¢þ
>WENV182829890
OKDT01001807
[OKDT] human gut metagenome; human gut
1441
1347
-
SeC
TCA
[ENA]
¢þ
>WENV182829880
OKDT01001029
[OKDT] human gut metagenome; human gut
1449
1364
-
Leu
CAA
[ENA]
¢þ
>WENV182829913
OKDT01001927
[OKDT] human gut metagenome; human gut
1457
1532
+
fMet
CAT
[ENA]
¢þ
>WENV182829897
OKDT01001861
[OKDT] human gut metagenome; human gut
1473
1400
-
Arg
ACG
[ENA]
¢þ
>WENV182829879
OKDT01001029
[OKDT] human gut metagenome; human gut
1533
1463
-
Cys
GCA
[ENA]
¢þ
>WENV182829870
OKDT01000836
[OKDT] human gut metagenome; human gut
1554
1481
-
Gly
CCC
[ENA]
¢þ
>WENV182829896
OKDT01001861
[OKDT] human gut metagenome; human gut
1572
1487
-
Leu
TAA
[ENA]
¢þ
>WENV182829914
OKDT01001927
[OKDT] human gut metagenome; human gut
1580
1656
+
Asp
GTC
[ENA]
¢þ
>WENV182829878
OKDT01001029
[OKDT] human gut metagenome; human gut
1631
1558
-
Gln
TTG
[ENA]
¢þ
>WENV182829867
OKDT01000787
[OKDT] human gut metagenome; human gut
1633
1561
-
Cys
GCA
[ENA]
¢þ
>WENV182829888
OKDT01001425
[OKDT] human gut metagenome; human gut
1637
1713
+
Asp
GTC
[ENA]
¢þ
>WENV182829895
OKDT01001861
[OKDT] human gut metagenome; human gut
1649
1578
-
Gly
GCC
[ENA]
¢þ
>WENV182829910
OKDT01001916
[OKDT] human gut metagenome; human gut
1653
1580
-
Asn
GTT
[ENA]
¢þ
>WENV182829915
OKDT01001927
[OKDT] human gut metagenome; human gut
1658
1728
+
Gly
TCC
[ENA]
¢þ
>WENV182829885
OKDT01001149
[OKDT] human gut metagenome; human gut
1711
1636
-
Ile2
CAT
[ENA]
¢þ
>WENV182829877
OKDT01001029
[OKDT] human gut metagenome; human gut
1717
1644
-
His
GTG
[ENA]
¢þ
>WENV182829909
OKDT01001916
[OKDT] human gut metagenome; human gut
1731
1658
-
Glu
TTC
[ENA]
¢þ
>WENV182829916
OKDT01001927
[OKDT] human gut metagenome; human gut
1737
1812
+
Ile
GAT
[ENA]
¢þ
>WENV182829894
OKDT01001861
[OKDT] human gut metagenome; human gut
1742
1670
-
Thr
TGT
[ENA]
¢þ
>WENV182829869
OKDT01000832
[OKDT] human gut metagenome; human gut
1755
1668
-
Ser
TGA
[ENA]
¢þ
>WENV182829908
OKDT01001916
[OKDT] human gut metagenome; human gut
1819
1744
-
Ile
GAT
[ENA]
¢þ
>WENV182829917
OKDT01001927
[OKDT] human gut metagenome; human gut
1825
1898
+
Glu
TTC
[ENA]
¢þ
>WENV182829876
OKDT01001029
[OKDT] human gut metagenome; human gut
1827
1754
-
Trp
CCA
[ENA]
¢þ
>WENV182829893
OKDT01001861
[OKDT] human gut metagenome; human gut
1834
1753
-
Leu
TAG
[ENA]
¢þ
>WENV182829892
OKDT01001861
[OKDT] human gut metagenome; human gut
1912
1840
-
Lys
TTT
[ENA]
¢þ
>WENV182829875
OKDT01001029
[OKDT] human gut metagenome; human gut
1913
1831
-
Tyr
GTA
[ENA]
¢þ
>WENV182829907
OKDT01001916
[OKDT] human gut metagenome; human gut
1925
1853
-
Gly
TCC
[ENA]
¢þ
>WENV182829891
OKDT01001861
[OKDT] human gut metagenome; human gut
2012
1940
-
Asp
GTC
[ENA]
¢þ
>WENV182829798
OKDT01000023
[OKDT] human gut metagenome; human gut
2140
2065
-
Phe
GAA
[ENA]
¢þ
>WENV182829868
OKDT01000823
[OKDT] human gut metagenome; human gut
2609
2536
-
Arg
TCT
[ENA]
¢þ
>WENV182829832
OKDT01000181
[OKDT] human gut metagenome; human gut
2640
2715
+
Gly
GCC
[ENA]
¢þ
>WENV182829848
OKDT01000308
[OKDT] human gut metagenome; human gut
2754
2829
+
Val
TAC
[ENA]
¢þ
>WENV182829833
OKDT01000181
[OKDT] human gut metagenome; human gut
2756
2829
+
Cys
GCA
[ENA]
¢þ
>WENV182829859
OKDT01000408
[OKDT] human gut metagenome; human gut
2757
2673
-
Tyr
GTA
[ENA]
¢þ
>WENV182829799
OKDT01000026
[OKDT] human gut metagenome; human gut
2778
2703
-
Lys
CTT
[ENA]
¢þ
>WENV182829849
OKDT01000308
[OKDT] human gut metagenome; human gut
2833
2908
+
Lys
TTT
[ENA]
¢þ
>WENV182829834
OKDT01000181
[OKDT] human gut metagenome; human gut
2843
2929
+
Leu
TAA
[ENA]
¢þ
>WENV182829858
OKDT01000408
[OKDT] human gut metagenome; human gut
3057
2973
-
Tyr
GTA
[ENA]
¢þ
>WENV182829866
OKDT01000755
[OKDT] human gut metagenome; human gut
3120
3193
+
Lys
CTT
[ENA]
¢þ
>WENV182829851
OKDT01000352
[OKDT] human gut metagenome; human gut
3460
3385
-
Asn
GTT
[ENA]
¢þ
>WENV182829884
OKDT01001133
[OKDT] human gut metagenome; human gut
3542
3615
+
Arg
CCG
[ENA]
¢þ
>WENV182829881
OKDT01001101
[OKDT] human gut metagenome; human gut
3671
3746
+
Thr
TGT
[ENA]
¢þ
>WENV182829882
OKDT01001101
[OKDT] human gut metagenome; human gut
3757
3841
+
Tyr
GTA
[ENA]
¢þ
>WENV182829873
OKDT01000978
[OKDT] human gut metagenome; human gut
3933
4008
+
Phe
GAA
[ENA]
¢þ
>WENV182829883
OKDT01001101
[OKDT] human gut metagenome; human gut
3957
4031
+
Gly
TCC
[ENA]
¢þ
>WENV182829872
OKDT01000976
[OKDT] human gut metagenome; human gut
4303
4227
-
Arg
TCT
[ENA]
¢þ
>WENV182829823
OKDT01000152
[OKDT] human gut metagenome; human gut
4898
4804
-
SeC
TCA
[ENA]
¢þ
>WENV182829842
OKDT01000274
[OKDT] human gut metagenome; human gut
4926
4855
-
Arg
CCG
[ENA]
¢þ
>WENV182829860
OKDT01000458
[OKDT] human gut metagenome; human gut
5577
5651
+
Asn
GTT
[ENA]
¢þ
>WENV182829861
OKDT01000458
[OKDT] human gut metagenome; human gut
5657
5731
+
Gly
TCC
[ENA]
¢þ
>WENV182829862
OKDT01000458
[OKDT] human gut metagenome; human gut
5737
5811
+
Thr
TGT
[ENA]
¢þ
>WENV182829850
OKDT01000338
[OKDT] human gut metagenome; human gut
6184
6109
-
Arg
CCT
[ENA]
¢þ
>WENV182829864
OKDT01000584
[OKDT] human gut metagenome; human gut
6214
6303
+
Ser
GGA
[ENA]
¢þ
>WENV182829865
OKDT01000640
[OKDT] human gut metagenome; human gut
6377
6452
+
Phe
GAA
[ENA]
¢þ
>WENV182829841
OKDT01000274
[OKDT] human gut metagenome; human gut
6452
6379
-
Gln
TTG
[ENA]
¢þ
>WENV182829840
OKDT01000274
[OKDT] human gut metagenome; human gut
6581
6501
-
Tyr
GTA
[ENA]
¢þ
>WENV182829853
OKDT01000390
[OKDT] human gut metagenome; human gut
6742
6666
-
fMet
CAT
[ENA]
¢þ
>WENV182829846
OKDT01000288
[OKDT] human gut metagenome; human gut
7348
7273
-
Gly
GCC
[ENA]
¢þ
>WENV182829806
OKDT01000044
[OKDT] human gut metagenome; human gut
7405
7330
-
Asn
GTT
[ENA]
¢þ
>WENV182829845
OKDT01000288
[OKDT] human gut metagenome; human gut
7492
7417
-
Gly
GCC
[ENA]
¢þ
>WENV182829844
OKDT01000288
[OKDT] human gut metagenome; human gut
7636
7561
-
Gly
GCC
[ENA]
¢þ
>WENV182829863
OKDT01000483
[OKDT] human gut metagenome; human gut
7733
7657
-
Pro
GGG
[ENA]
¢þ
>WENV182829837
OKDT01000210
[OKDT] human gut metagenome; human gut
7763
7687
-
Pro
TGG
[ENA]
¢þ
>WENV182829843
OKDT01000288
[OKDT] human gut metagenome; human gut
7780
7705
-
Gly
GCC
[ENA]
¢þ
>WENV182829852
OKDT01000376
[OKDT] human gut metagenome; human gut
8125
8053
-
Thr
CGT
[ENA]
¢þ
>WENV182829856
OKDT01000397
[OKDT] human gut metagenome; human gut
9492
9417
-
Ala
GGC
[ENA]
¢þ
>WENV182829855
OKDT01000397
[OKDT] human gut metagenome; human gut
9608
9533
-
Ala
GGC
[ENA]
¢þ
>WENV182829820
OKDT01000135
[OKDT] human gut metagenome; human gut
10301
10225
-
Asp
GTC
[ENA]
¢þ
>WENV182829818
OKDT01000128
[OKDT] human gut metagenome; human gut
10393
10318
-
Lys
TTT
[ENA]
¢þ
>WENV182829817
OKDT01000128
[OKDT] human gut metagenome; human gut
10615
10540
-
Lys
TTT
[ENA]
¢þ
>WENV182829847
OKDT01000291
[OKDT] human gut metagenome; human gut
10776
10862
+
Leu
GAG
[ENA]
¢þ
>WENV182829816
OKDT01000128
[OKDT] human gut metagenome; human gut
10837
10762
-
Lys
TTT
[ENA]
¢þ
>WENV182829815
OKDT01000128
[OKDT] human gut metagenome; human gut
10916
10841
-
Val
TAC
[ENA]
¢þ
>WENV182829814
OKDT01000128
[OKDT] human gut metagenome; human gut
11044
10969
-
Lys
TTT
[ENA]
¢þ
>WENV182829813
OKDT01000128
[OKDT] human gut metagenome; human gut
11123
11048
-
Val
TAC
[ENA]
¢þ
>WENV182829812
OKDT01000128
[OKDT] human gut metagenome; human gut
11324
11249
-
Lys
TTT
[ENA]
¢þ
>WENV182829821
OKDT01000144
[OKDT] human gut metagenome; human gut
11906
11992
+
Leu
CAG
[ENA]
¢þ
>WENV182829822
OKDT01000144
[OKDT] human gut metagenome; human gut
12021
12107
+
Leu
CAG
[ENA]
¢þ
>WENV182829819
OKDT01000134
[OKDT] human gut metagenome; human gut
12433
12505
+
Arg
CCT
[ENA]
¢þ
>WENV182829805
OKDT01000044
[OKDT] human gut metagenome; human gut
12645
12570
-
Asn
GTT
[ENA]
¢þ
>WENV182829808
OKDT01000053
[OKDT] human gut metagenome; human gut
13190
13264
+
Arg
CCT
[ENA]
¢þ
>WENV182829804
OKDT01000044
[OKDT] human gut metagenome; human gut
13637
13726
+
Ser
CGA
[ENA]
¢þ
>WENV182829836
OKDT01000203
[OKDT] human gut metagenome; human gut
15580
15506
-
Gln
CTG
[ENA]
¢þ
>WENV182829835
OKDT01000203
[OKDT] human gut metagenome; human gut
15730
15656
-
Gln
CTG
[ENA]
¢þ
>WENV182829831
OKDT01000168
[OKDT] human gut metagenome; human gut
16292
16219
-
Pro
TGG
[ENA]
¢þ
>WENV182829830
OKDT01000168
[OKDT] human gut metagenome; human gut
16377
16304
-
Arg
ACG
[ENA]
¢þ
>WENV182829829
OKDT01000168
[OKDT] human gut metagenome; human gut
16477
16392
-
Leu
TAA
[ENA]
¢þ
>WENV182829828
OKDT01000168
[OKDT] human gut metagenome; human gut
16564
16493
-
Gly
GCC
[ENA]
¢þ
>WENV182829827
OKDT01000168
[OKDT] human gut metagenome; human gut
16644
16569
-
Thr
TGT
[ENA]
¢þ
>WENV182829826
OKDT01000168
[OKDT] human gut metagenome; human gut
16733
16650
-
Leu
TAG
[ENA]
¢þ
>WENV182829825
OKDT01000168
[OKDT] human gut metagenome; human gut
16822
16748
-
Lys
TTT
[ENA]
¢þ
>WENV182829824
OKDT01000168
[OKDT] human gut metagenome; human gut
16901
16827
-
Val
TAC
[ENA]
¢þ
>WENV182829800
OKDT01000028
[OKDT] human gut metagenome; human gut
18573
18648
+
Phe
GAA
[ENA]
¢þ
>WENV182829807
OKDT01000045
[OKDT] human gut metagenome; human gut
19620
19549
-
Arg
CCT
[ENA]
¢þ
>WENV182829811
OKDT01000110
[OKDT] human gut metagenome; human gut
21229
21157
-
Thr
GGT
[ENA]
¢þ
>WENV182829809
OKDT01000084
[OKDT] human gut metagenome; human gut
23655
23731
+
Val
GAC
[ENA]
¢þ
>WENV182829794
OKDT01000009
[OKDT] human gut metagenome; human gut
27329
27253
-
fMet
CAT
[ENA]
¢þ
>WENV182829796
OKDT01000020
[OKDT] human gut metagenome; human gut
28800
28876
+
Pro
GGG
[ENA]
¢þ
>WENV182829803
OKDT01000036
[OKDT] human gut metagenome; human gut
30906
30831
-
Asn
GTT
[ENA]
¢þ
>WENV182829802
OKDT01000036
[OKDT] human gut metagenome; human gut
32664
32739
+
Asn
GTT
[ENA]
¢þ
>WENV182829793
OKDT01000007
[OKDT] human gut metagenome; human gut
58986
58910
-
Arg
ACG
[ENA]
¢þ
>WENV182829792
OKDT01000007
[OKDT] human gut metagenome; human gut
59291
59215
-
Arg
ACG
[ENA]
¢þ
>WENV182829791
OKDT01000006
[OKDT] human gut metagenome; human gut
61929
61854
-
Thr
CGT
[ENA]
¢þ
>WENV182829790
OKDT01000002
[OKDT] human gut metagenome; human gut
74358
74276
-
Leu
CAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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