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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OKDV] human gut metagenome; human gut
HIT:
47 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182830032
OKDV01000762
[OKDV] human gut metagenome; human gut
59
133
+
Lys
TTT
[ENA]
¢þ
>WENV182830005
OKDV01000021
[OKDV] human gut metagenome; human gut
59
134
+
Asn
GTT
[ENA]
¢þ
>WENV182830029
OKDV01000712
[OKDV] human gut metagenome; human gut
62
136
+
Asn
GTT
[ENA]
¢þ
>WENV182830040
OKDV01000984
[OKDV] human gut metagenome; human gut
66
139
+
Pro
TGG
[ENA]
¢þ
>WENV182830011
OKDV01000087
[OKDV] human gut metagenome; human gut
96
186
+
Ser
GGA
[ENA]
¢þ
>WENV182830027
OKDV01000436
[OKDV] human gut metagenome; human gut
137
62
-
Thr
TGT
[ENA]
¢þ
>WENV182830030
OKDV01000712
[OKDV] human gut metagenome; human gut
137
210
+
Glu
TTC
[ENA]
¢þ
>WENV182830010
OKDV01000077
[OKDV] human gut metagenome; human gut
144
217
+
Pro
TGG
[ENA]
¢þ
>WENV182830028
OKDV01000710
[OKDV] human gut metagenome; human gut
148
76
-
Ala
TGC
[ENA]
¢þ
>WENV182830033
OKDV01000762
[OKDV] human gut metagenome; human gut
148
231
+
Leu
TAG
[ENA]
¢þ
>WENV182830041
OKDV01000984
[OKDV] human gut metagenome; human gut
152
226
+
Ala
TGC
[ENA]
¢þ
>WENV182830012
OKDV01000087
[OKDV] human gut metagenome; human gut
202
275
+
Glu
TTC
[ENA]
¢þ
>WENV182830026
OKDV01000436
[OKDV] human gut metagenome; human gut
219
144
-
Val
TAC
[ENA]
¢þ
>WENV182830034
OKDV01000762
[OKDV] human gut metagenome; human gut
237
312
+
Thr
TGT
[ENA]
¢þ
>WENV182830038
OKDV01000812
[OKDV] human gut metagenome; human gut
245
318
+
fMet
CAT
[ENA]
¢þ
>WENV182830042
OKDV01000984
[OKDV] human gut metagenome; human gut
247
322
+
Met
CAT
[ENA]
¢þ
>WENV182830031
OKDV01000712
[OKDV] human gut metagenome; human gut
262
352
+
Ser
GGA
[ENA]
¢þ
>WENV182830023
OKDV01000161
[OKDV] human gut metagenome; human gut
277
351
+
Lys
CTT
[ENA]
¢þ
>WENV182830013
OKDV01000087
[OKDV] human gut metagenome; human gut
301
375
+
Val
TAC
[ENA]
¢þ
>WENV182830035
OKDV01000762
[OKDV] human gut metagenome; human gut
317
388
+
Gly
GCC
[ENA]
¢þ
>WENV182830043
OKDV01000984
[OKDV] human gut metagenome; human gut
341
416
+
Ile2
CAT
[ENA]
¢þ
>WENV182830014
OKDV01000087
[OKDV] human gut metagenome; human gut
385
460
+
Asp
GTC
[ENA]
¢þ
>WENV182830036
OKDV01000762
[OKDV] human gut metagenome; human gut
404
489
+
Leu
TAA
[ENA]
¢þ
>WENV182830039
OKDV01000812
[OKDV] human gut metagenome; human gut
422
496
+
Phe
GAA
[ENA]
¢þ
>WENV182830037
OKDV01000762
[OKDV] human gut metagenome; human gut
504
577
+
Arg
ACG
[ENA]
¢þ
>WENV182830015
OKDV01000087
[OKDV] human gut metagenome; human gut
506
578
+
Phe
GAA
[ENA]
¢þ
>WENV182830016
OKDV01000087
[OKDV] human gut metagenome; human gut
583
665
+
Tyr
GTA
[ENA]
¢þ
>WENV182830017
OKDV01000087
[OKDV] human gut metagenome; human gut
669
742
+
Trp
CCA
[ENA]
¢þ
>WENV182830025
OKDV01000333
[OKDV] human gut metagenome; human gut
748
673
-
Ala
TGC
[ENA]
¢þ
>WENV182830018
OKDV01000087
[OKDV] human gut metagenome; human gut
779
852
+
His
GTG
[ENA]
¢þ
>WENV182830024
OKDV01000333
[OKDV] human gut metagenome; human gut
836
762
-
Pro
TGG
[ENA]
¢þ
>WENV182830019
OKDV01000087
[OKDV] human gut metagenome; human gut
865
938
+
Gln
TTG
[ENA]
¢þ
>WENV182830020
OKDV01000087
[OKDV] human gut metagenome; human gut
963
1033
+
Cys
GCA
[ENA]
¢þ
>WENV182830021
OKDV01000087
[OKDV] human gut metagenome; human gut
1046
1131
+
Leu
CAA
[ENA]
¢þ
>WENV182830000
OKDV01000008
[OKDV] human gut metagenome; human gut
2214
2128
-
Leu
GAG
[ENA]
¢þ
>WENV182830022
OKDV01000142
[OKDV] human gut metagenome; human gut
2515
2586
+
Trp
CCA
[ENA]
¢þ
>WENV182830006
OKDV01000061
[OKDV] human gut metagenome; human gut
9088
9170
+
Tyr
GTA
[ENA]
¢þ
>WENV182830007
OKDV01000061
[OKDV] human gut metagenome; human gut
9178
9251
+
Gln
TTG
[ENA]
¢þ
>WENV182830004
OKDV01000018
[OKDV] human gut metagenome; human gut
12211
12122
-
Ser
CGA
[ENA]
¢þ
>WENV182830009
OKDV01000071
[OKDV] human gut metagenome; human gut
12836
12763
-
Glu
TTC
[ENA]
¢þ
>WENV182830008
OKDV01000071
[OKDV] human gut metagenome; human gut
12939
12850
-
Ser
GCT
[ENA]
¢þ
>WENV182830001
OKDV01000013
[OKDV] human gut metagenome; human gut
19049
18977
-
Thr
GGT
[ENA]
¢þ
>WENV182830003
OKDV01000018
[OKDV] human gut metagenome; human gut
31917
31846
-
Trp
CCA
[ENA]
¢þ
>WENV182830002
OKDV01000014
[OKDV] human gut metagenome; human gut
34651
34724
+
Arg
CCG
[ENA]
¢þ
>WENV182829998
OKDV01000004
[OKDV] human gut metagenome; human gut
37628
37553
-
Arg
CCT
[ENA]
¢þ
>WENV182829999
OKDV01000005
[OKDV] human gut metagenome; human gut
80851
80923
+
Thr
CGT
[ENA]
¢þ
>WENV182829997
OKDV01000004
[OKDV] human gut metagenome; human gut
86963
87038
+
Arg
TCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK