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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKDX] human gut metagenome; human gut
HIT:
154 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182830295
OKDX01001051
[OKDX] human gut metagenome; human gut
3
89
+
Leu
CAG
[ENA]
¢þ
>WENV182830205
OKDX01000019
[OKDX] human gut metagenome; human gut
5
80
+
Thr
CGT
[ENA]
¢þ
>WENV182830314
OKDX01007026
[OKDX] human gut metagenome; human gut
72
160
+
Leu
TAA
[ENA]
¢þ
>WENV182830256
OKDX01000319
[OKDX] human gut metagenome; human gut
76
151
+
Met
CAT
[ENA]
¢þ
>WENV182830306
OKDX01003816
[OKDX] human gut metagenome; human gut
77
151
+
Cys
GCA
[ENA]
¢þ
>WENV182830342
OKDX01010462
[OKDX] human gut metagenome; human gut
79
167
+
Ser
GGA
[ENA]
¢þ
>WENV182830343
OKDX01010576
[OKDX] human gut metagenome; human gut
85
10
-
Lys
CTT
[ENA]
¢þ
>WENV182830231
OKDX01000091
[OKDX] human gut metagenome; human gut
88
1
-
Ser
TGA
[ENA]
¢þ
>WENV182830240
OKDX01000143
[OKDX] human gut metagenome; human gut
103
178
+
Trp
CCA
[ENA]
¢þ
>WENV182830349
OKDX01013345
[OKDX] human gut metagenome; human gut
115
41
-
Arg
CCT
[ENA]
¢þ
>WENV182830339
OKDX01009324
[OKDX] human gut metagenome; human gut
139
63
-
Met
CAT
[ENA]
¢þ
>WENV182830307
OKDX01004234
[OKDX] human gut metagenome; human gut
140
52
-
Leu
TAA
[ENA]
¢þ
>WENV182830347
OKDX01011892
[OKDX] human gut metagenome; human gut
151
226
+
Lys
CTT
[ENA]
¢þ
>WENV182830341
OKDX01010206
[OKDX] human gut metagenome; human gut
162
236
+
Lys
TTT
[ENA]
¢þ
>WENV182830269
OKDX01000494
[OKDX] human gut metagenome; human gut
162
237
+
Ala
TGC
[ENA]
¢þ
>WENV182830315
OKDX01007026
[OKDX] human gut metagenome; human gut
166
239
+
Gly
TCC
[ENA]
¢þ
>WENV182830331
OKDX01007865
[OKDX] human gut metagenome; human gut
169
96
-
Gly
TCC
[ENA]
¢þ
>WENV182830257
OKDX01000319
[OKDX] human gut metagenome; human gut
170
245
+
Ile2
CAT
[ENA]
¢þ
>WENV182830311
OKDX01005557
[OKDX] human gut metagenome; human gut
181
270
+
Ser
GGA
[ENA]
¢þ
>WENV182830224
OKDX01000055
[OKDX] human gut metagenome; human gut
200
275
+
Lys
TTT
[ENA]
¢þ
>WENV182830338
OKDX01009324
[OKDX] human gut metagenome; human gut
224
149
-
Phe
GAA
[ENA]
¢þ
>WENV182830316
OKDX01007026
[OKDX] human gut metagenome; human gut
242
317
+
Asn
GTT
[ENA]
¢þ
>WENV182830330
OKDX01007865
[OKDX] human gut metagenome; human gut
250
176
-
Gly
GCC
[ENA]
¢þ
>WENV182830309
OKDX01004625
[OKDX] human gut metagenome; human gut
252
178
-
Arg
CCT
[ENA]
¢þ
>WENV182830340
OKDX01010052
[OKDX] human gut metagenome; human gut
263
178
-
Asp
GTC
[ENA]
¢þ
>WENV182830258
OKDX01000319
[OKDX] human gut metagenome; human gut
278
367
+
Ser
TGA
[ENA]
¢þ
>WENV182830313
OKDX01007005
[OKDX] human gut metagenome; human gut
305
381
+
Arg
TCT
[ENA]
¢þ
>WENV182830337
OKDX01009324
[OKDX] human gut metagenome; human gut
316
228
-
Ser
TGA
[ENA]
¢þ
>WENV182830317
OKDX01007026
[OKDX] human gut metagenome; human gut
319
394
+
Glu
TTC
[ENA]
¢þ
>WENV182830323
OKDX01007061
[OKDX] human gut metagenome; human gut
323
236
-
Ser
TGA
[ENA]
¢þ
>WENV182830345
OKDX01011190
[OKDX] human gut metagenome; human gut
360
435
+
Gln
CTG
[ENA]
¢þ
>WENV182830329
OKDX01007865
[OKDX] human gut metagenome; human gut
361
278
-
Leu
TAG
[ENA]
¢þ
>WENV182830336
OKDX01009324
[OKDX] human gut metagenome; human gut
395
320
-
Lys
TTT
[ENA]
¢þ
>WENV182830318
OKDX01007026
[OKDX] human gut metagenome; human gut
399
474
+
Val
TAC
[ENA]
¢þ
>WENV182830259
OKDX01000319
[OKDX] human gut metagenome; human gut
400
475
+
fMet
CAT
[ENA]
¢þ
>WENV182830344
OKDX01010681
[OKDX] human gut metagenome; human gut
443
358
-
Leu
GAG
[ENA]
¢þ
>WENV182830328
OKDX01007865
[OKDX] human gut metagenome; human gut
445
370
-
Lys
TTT
[ENA]
¢þ
>WENV182830332
OKDX01008649
[OKDX] human gut metagenome; human gut
467
392
-
Glu
CTC
[ENA]
¢þ
>WENV182830346
OKDX01011412
[OKDX] human gut metagenome; human gut
469
555
+
Leu
GAG
[ENA]
¢þ
>WENV182830335
OKDX01009324
[OKDX] human gut metagenome; human gut
480
404
-
His
GTG
[ENA]
¢þ
>WENV182830319
OKDX01007026
[OKDX] human gut metagenome; human gut
490
565
+
Thr
TGT
[ENA]
¢þ
>WENV182830265
OKDX01000332
[OKDX] human gut metagenome; human gut
508
584
+
Arg
TCT
[ENA]
¢þ
>WENV182830348
OKDX01012427
[OKDX] human gut metagenome; human gut
513
428
-
Leu
AAG
[ENA]
¢þ
>WENV182830260
OKDX01000319
[OKDX] human gut metagenome; human gut
523
599
+
Asp
GTC
[ENA]
¢þ
>WENV182830327
OKDX01007865
[OKDX] human gut metagenome; human gut
524
450
-
Gln
TTG
[ENA]
¢þ
>WENV182830228
OKDX01000078
[OKDX] human gut metagenome; human gut
545
620
+
Asn
GTT
[ENA]
¢þ
>WENV182830334
OKDX01009324
[OKDX] human gut metagenome; human gut
564
488
-
Pro
TGG
[ENA]
¢þ
>WENV182830320
OKDX01007026
[OKDX] human gut metagenome; human gut
570
652
+
Tyr
GTA
[ENA]
¢þ
>WENV182830261
OKDX01000319
[OKDX] human gut metagenome; human gut
601
671
+
Gly
TCC
[ENA]
¢þ
>WENV182830326
OKDX01007865
[OKDX] human gut metagenome; human gut
605
530
-
His
GTG
[ENA]
¢þ
>WENV182830321
OKDX01007026
[OKDX] human gut metagenome; human gut
658
733
+
Gln
TTG
[ENA]
¢þ
>WENV182830333
OKDX01009324
[OKDX] human gut metagenome; human gut
663
587
-
Ile2
CAT
[ENA]
¢þ
>WENV182830262
OKDX01000319
[OKDX] human gut metagenome; human gut
680
755
+
Ile
GAT
[ENA]
¢þ
>WENV182830325
OKDX01007865
[OKDX] human gut metagenome; human gut
686
611
-
Lys
CTT
[ENA]
¢þ
>WENV182830310
OKDX01004854
[OKDX] human gut metagenome; human gut
700
771
+
Glu
TTC
[ENA]
¢þ
>WENV182830324
OKDX01007815
[OKDX] human gut metagenome; human gut
711
637
-
Gln
CTG
[ENA]
¢þ
>WENV182830322
OKDX01007026
[OKDX] human gut metagenome; human gut
742
817
+
Lys
TTT
[ENA]
¢þ
>WENV182830312
OKDX01006275
[OKDX] human gut metagenome; human gut
751
826
+
Lys
CTT
[ENA]
¢þ
>WENV182830263
OKDX01000319
[OKDX] human gut metagenome; human gut
764
853
+
Ser
GCT
[ENA]
¢þ
>WENV182830305
OKDX01002669
[OKDX] human gut metagenome; human gut
836
761
-
Asn
GTT
[ENA]
¢þ
>WENV182830227
OKDX01000069
[OKDX] human gut metagenome; human gut
845
771
-
Lys
CTT
[ENA]
¢þ
>WENV182830264
OKDX01000319
[OKDX] human gut metagenome; human gut
867
940
+
Glu
TTC
[ENA]
¢þ
>WENV182830267
OKDX01000408
[OKDX] human gut metagenome; human gut
933
858
-
Thr
TGT
[ENA]
¢þ
>WENV182830232
OKDX01000098
[OKDX] human gut metagenome; human gut
998
914
-
Leu
CAA
[ENA]
¢þ
>WENV182830304
OKDX01002633
[OKDX] human gut metagenome; human gut
1004
1078
+
Asn
GTT
[ENA]
¢þ
>WENV182830308
OKDX01004315
[OKDX] human gut metagenome; human gut
1064
989
-
Trp
CCA
[ENA]
¢þ
>WENV182830302
OKDX01001870
[OKDX] human gut metagenome; human gut
1178
1103
-
Thr
GGT
[ENA]
¢þ
>WENV182830300
OKDX01001339
[OKDX] human gut metagenome; human gut
1266
1341
+
Ala
GGC
[ENA]
¢þ
>WENV182830303
OKDX01002556
[OKDX] human gut metagenome; human gut
1482
1557
+
Ile2
CAT
[ENA]
¢þ
>WENV182830293
OKDX01000995
[OKDX] human gut metagenome; human gut
1683
1758
+
Asn
GTT
[ENA]
¢þ
>WENV182830281
OKDX01000579
[OKDX] human gut metagenome; human gut
1728
1810
+
Tyr
GTA
[ENA]
¢þ
>WENV182830283
OKDX01000609
[OKDX] human gut metagenome; human gut
1749
1665
-
Leu
CAA
[ENA]
¢þ
>WENV182830298
OKDX01001201
[OKDX] human gut metagenome; human gut
1815
1739
-
Val
GAC
[ENA]
¢þ
>WENV182830282
OKDX01000579
[OKDX] human gut metagenome; human gut
1818
1891
+
Gln
TTG
[ENA]
¢þ
>WENV182830294
OKDX01001039
[OKDX] human gut metagenome; human gut
1850
1775
-
Ile2
CAT
[ENA]
¢þ
>WENV182830297
OKDX01001201
[OKDX] human gut metagenome; human gut
1896
1820
-
Val
GAC
[ENA]
¢þ
>WENV182830301
OKDX01001729
[OKDX] human gut metagenome; human gut
2146
2052
-
SeC
TCA
[ENA]
¢þ
>WENV182830299
OKDX01001308
[OKDX] human gut metagenome; human gut
2199
2127
-
Ala
TGC
[ENA]
¢þ
>WENV182830288
OKDX01000640
[OKDX] human gut metagenome; human gut
2217
2289
+
Arg
CCT
[ENA]
¢þ
>WENV182830252
OKDX01000265
[OKDX] human gut metagenome; human gut
2283
2358
+
Gly
GCC
[ENA]
¢þ
>WENV182830253
OKDX01000265
[OKDX] human gut metagenome; human gut
2427
2502
+
Gly
GCC
[ENA]
¢þ
>WENV182830254
OKDX01000265
[OKDX] human gut metagenome; human gut
2571
2646
+
Gly
GCC
[ENA]
¢þ
>WENV182830225
OKDX01000057
[OKDX] human gut metagenome; human gut
2644
2738
+
SeC
TCA
[ENA]
¢þ
>WENV182830296
OKDX01001150
[OKDX] human gut metagenome; human gut
2754
2829
+
Val
TAC
[ENA]
¢þ
>WENV182830280
OKDX01000552
[OKDX] human gut metagenome; human gut
2853
2939
+
Leu
GAG
[ENA]
¢þ
>WENV182830290
OKDX01000748
[OKDX] human gut metagenome; human gut
3122
3049
-
Gly
CCC
[ENA]
¢þ
>WENV182830270
OKDX01000494
[OKDX] human gut metagenome; human gut
3293
3366
+
Gly
TCC
[ENA]
¢þ
>WENV182830271
OKDX01000494
[OKDX] human gut metagenome; human gut
3504
3592
+
Leu
TAA
[ENA]
¢þ
>WENV182830291
OKDX01000777
[OKDX] human gut metagenome; human gut
3558
3634
+
Ile2
CAT
[ENA]
¢þ
>WENV182830272
OKDX01000494
[OKDX] human gut metagenome; human gut
3611
3686
+
fMet
CAT
[ENA]
¢þ
>WENV182830284
OKDX01000634
[OKDX] human gut metagenome; human gut
3627
3702
+
Thr
TGT
[ENA]
¢þ
>WENV182830292
OKDX01000777
[OKDX] human gut metagenome; human gut
3640
3715
+
Ala
TGC
[ENA]
¢þ
>WENV182830273
OKDX01000494
[OKDX] human gut metagenome; human gut
3696
3770
+
Glu
TTC
[ENA]
¢þ
>WENV182830285
OKDX01000634
[OKDX] human gut metagenome; human gut
3713
3797
+
Tyr
GTA
[ENA]
¢þ
>WENV182830274
OKDX01000494
[OKDX] human gut metagenome; human gut
3777
3852
+
Val
TAC
[ENA]
¢þ
>WENV182830275
OKDX01000494
[OKDX] human gut metagenome; human gut
3866
3942
+
Asp
GTC
[ENA]
¢þ
>WENV182830286
OKDX01000634
[OKDX] human gut metagenome; human gut
3913
3987
+
Gly
TCC
[ENA]
¢þ
>WENV182830276
OKDX01000494
[OKDX] human gut metagenome; human gut
3960
4035
+
Asn
GTT
[ENA]
¢þ
>WENV182830255
OKDX01000300
[OKDX] human gut metagenome; human gut
3974
4050
+
fMet
CAT
[ENA]
¢þ
>WENV182830268
OKDX01000445
[OKDX] human gut metagenome; human gut
3980
4055
+
Phe
GAA
[ENA]
¢þ
>WENV182830287
OKDX01000634
[OKDX] human gut metagenome; human gut
3993
4068
+
Thr
GGT
[ENA]
¢þ
>WENV182830277
OKDX01000494
[OKDX] human gut metagenome; human gut
4040
4114
+
Thr
TGT
[ENA]
¢þ
>WENV182830289
OKDX01000653
[OKDX] human gut metagenome; human gut
4057
4143
+
Leu
GAG
[ENA]
¢þ
>WENV182830278
OKDX01000494
[OKDX] human gut metagenome; human gut
4119
4203
+
Tyr
GTA
[ENA]
¢þ
>WENV182830279
OKDX01000494
[OKDX] human gut metagenome; human gut
4223
4296
+
Gly
TCC
[ENA]
¢þ
>WENV182830238
OKDX01000118
[OKDX] human gut metagenome; human gut
5061
5135
+
Arg
CCT
[ENA]
¢þ
>WENV182830266
OKDX01000343
[OKDX] human gut metagenome; human gut
5240
5316
+
Pro
CGG
[ENA]
¢þ
>WENV182830251
OKDX01000264
[OKDX] human gut metagenome; human gut
7203
7109
-
SeC
TCA
[ENA]
¢þ
>WENV182830250
OKDX01000240
[OKDX] human gut metagenome; human gut
8769
8694
-
Phe
GAA
[ENA]
¢þ
>WENV182830221
OKDX01000044
[OKDX] human gut metagenome; human gut
8938
8863
-
Asn
GTT
[ENA]
¢þ
>WENV182830226
OKDX01000061
[OKDX] human gut metagenome; human gut
9650
9734
+
Tyr
GTA
[ENA]
¢þ
>WENV182830230
OKDX01000083
[OKDX] human gut metagenome; human gut
10699
10774
+
Phe
GAA
[ENA]
¢þ
>WENV182830236
OKDX01000103
[OKDX] human gut metagenome; human gut
11538
11462
-
Pro
TGG
[ENA]
¢þ
>WENV182830235
OKDX01000103
[OKDX] human gut metagenome; human gut
11667
11581
-
Leu
CAG
[ENA]
¢þ
>WENV182830234
OKDX01000103
[OKDX] human gut metagenome; human gut
11763
11688
-
His
GTG
[ENA]
¢þ
>WENV182830233
OKDX01000103
[OKDX] human gut metagenome; human gut
11894
11818
-
Arg
CCG
[ENA]
¢þ
>WENV182830249
OKDX01000226
[OKDX] human gut metagenome; human gut
12216
12143
-
Pro
TGG
[ENA]
¢þ
>WENV182830248
OKDX01000226
[OKDX] human gut metagenome; human gut
12301
12228
-
Arg
ACG
[ENA]
¢þ
>WENV182830247
OKDX01000226
[OKDX] human gut metagenome; human gut
12401
12316
-
Leu
TAA
[ENA]
¢þ
>WENV182830246
OKDX01000226
[OKDX] human gut metagenome; human gut
12488
12417
-
Gly
GCC
[ENA]
¢þ
>WENV182830245
OKDX01000226
[OKDX] human gut metagenome; human gut
12568
12493
-
Thr
TGT
[ENA]
¢þ
>WENV182830244
OKDX01000226
[OKDX] human gut metagenome; human gut
12657
12574
-
Leu
TAG
[ENA]
¢þ
>WENV182830243
OKDX01000226
[OKDX] human gut metagenome; human gut
12746
12672
-
Lys
TTT
[ENA]
¢þ
>WENV182830242
OKDX01000226
[OKDX] human gut metagenome; human gut
12825
12751
-
Val
TAC
[ENA]
¢þ
>WENV182830220
OKDX01000044
[OKDX] human gut metagenome; human gut
14179
14104
-
Asn
GTT
[ENA]
¢þ
>WENV182830241
OKDX01000201
[OKDX] human gut metagenome; human gut
14314
14238
-
Arg
TCT
[ENA]
¢þ
>WENV182830208
OKDX01000022
[OKDX] human gut metagenome; human gut
15031
14956
-
Arg
CCT
[ENA]
¢þ
>WENV182830216
OKDX01000044
[OKDX] human gut metagenome; human gut
15171
15260
+
Ser
CGA
[ENA]
¢þ
>WENV182830239
OKDX01000134
[OKDX] human gut metagenome; human gut
18770
18843
+
Arg
CCG
[ENA]
¢þ
>WENV182830196
OKDX01000002
[OKDX] human gut metagenome; human gut
21143
21219
+
Pro
CGG
[ENA]
¢þ
>WENV182830201
OKDX01000009
[OKDX] human gut metagenome; human gut
22212
22136
-
Pro
GGG
[ENA]
¢þ
>WENV182830222
OKDX01000046
[OKDX] human gut metagenome; human gut
23287
23361
+
Asn
GTT
[ENA]
¢þ
>WENV182830223
OKDX01000046
[OKDX] human gut metagenome; human gut
23367
23443
+
Arg
TCT
[ENA]
¢þ
>WENV182830209
OKDX01000030
[OKDX] human gut metagenome; human gut
24525
24453
-
Thr
GGT
[ENA]
¢þ
>WENV182830212
OKDX01000034
[OKDX] human gut metagenome; human gut
24957
24882
-
Phe
GAA
[ENA]
¢þ
>WENV182830237
OKDX01000114
[OKDX] human gut metagenome; human gut
25483
25408
-
Ile2
CAT
[ENA]
¢þ
>WENV182830210
OKDX01000033
[OKDX] human gut metagenome; human gut
30298
30374
+
Val
GAC
[ENA]
¢þ
>WENV182830211
OKDX01000033
[OKDX] human gut metagenome; human gut
30379
30455
+
Val
GAC
[ENA]
¢þ
>WENV182830203
OKDX01000016
[OKDX] human gut metagenome; human gut
31197
31125
-
Thr
CGT
[ENA]
¢þ
>WENV182830229
OKDX01000078
[OKDX] human gut metagenome; human gut
32121
32210
+
Ser
CGA
[ENA]
¢þ
>WENV182830213
OKDX01000037
[OKDX] human gut metagenome; human gut
33210
33137
-
Gly
CCC
[ENA]
¢þ
>WENV182830217
OKDX01000044
[OKDX] human gut metagenome; human gut
36366
36441
+
Gly
GCC
[ENA]
¢þ
>WENV182830218
OKDX01000044
[OKDX] human gut metagenome; human gut
36482
36555
+
Cys
GCA
[ENA]
¢þ
>WENV182830219
OKDX01000044
[OKDX] human gut metagenome; human gut
36569
36655
+
Leu
TAA
[ENA]
¢þ
>WENV182830215
OKDX01000038
[OKDX] human gut metagenome; human gut
41445
41371
-
Gln
CTG
[ENA]
¢þ
>WENV182830214
OKDX01000038
[OKDX] human gut metagenome; human gut
41569
41493
-
Met
CAT
[ENA]
¢þ
>WENV182830207
OKDX01000022
[OKDX] human gut metagenome; human gut
64358
64433
+
Arg
TCT
[ENA]
¢þ
>WENV182830206
OKDX01000019
[OKDX] human gut metagenome; human gut
66993
66917
-
Asp
GTC
[ENA]
¢þ
>WENV182830204
OKDX01000018
[OKDX] human gut metagenome; human gut
72154
72246
+
Ser
GCT
[ENA]
¢þ
>WENV182830200
OKDX01000008
[OKDX] human gut metagenome; human gut
73893
73966
+
Ile2
CAT
[ENA]
¢þ
>WENV182830202
OKDX01000013
[OKDX] human gut metagenome; human gut
78425
78349
-
Arg
ACG
[ENA]
¢þ
>WENV182830199
OKDX01000005
[OKDX] human gut metagenome; human gut
80620
80534
-
Leu
CAG
[ENA]
¢þ
>WENV182830198
OKDX01000005
[OKDX] human gut metagenome; human gut
80738
80652
-
Leu
CAG
[ENA]
¢þ
>WENV182830197
OKDX01000004
[OKDX] human gut metagenome; human gut
104769
104693
-
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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