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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OKED] human gut metagenome; human gut
HIT:
57 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182831080
OKED01001140
[OKED] human gut metagenome; human gut
56
131
+
Thr
TGT
[ENA]
¢þ
>WENV182831078
OKED01000832
[OKED] human gut metagenome; human gut
67
141
+
Asn
GTT
[ENA]
¢þ
>WENV182831089
OKED01001324
[OKED] human gut metagenome; human gut
75
2
-
Arg
ACG
[ENA]
¢þ
>WENV182831079
OKED01001097
[OKED] human gut metagenome; human gut
93
182
+
Ser
GGA
[ENA]
¢þ
>WENV182831073
OKED01000209
[OKED] human gut metagenome; human gut
106
182
+
Arg
TCG
[ENA]
¢þ
>WENV182831076
OKED01000494
[OKED] human gut metagenome; human gut
131
57
-
Gly
GCC
[ENA]
¢þ
>WENV182831082
OKED01001206
[OKED] human gut metagenome; human gut
136
60
-
Ile2
CAT
[ENA]
¢þ
>WENV182831092
OKED01001333
[OKED] human gut metagenome; human gut
146
70
-
Met
CAT
[ENA]
¢þ
>WENV182831096
OKED01001412
[OKED] human gut metagenome; human gut
163
88
-
Ile2
CAT
[ENA]
¢þ
>WENV182831088
OKED01001324
[OKED] human gut metagenome; human gut
175
90
-
Leu
TAA
[ENA]
¢þ
>WENV182831075
OKED01000494
[OKED] human gut metagenome; human gut
212
137
-
Phe
GAA
[ENA]
¢þ
>WENV182831091
OKED01001333
[OKED] human gut metagenome; human gut
225
150
-
fMet
CAT
[ENA]
¢þ
>WENV182831095
OKED01001412
[OKED] human gut metagenome; human gut
257
182
-
Met
CAT
[ENA]
¢þ
>WENV182831087
OKED01001324
[OKED] human gut metagenome; human gut
262
191
-
Gly
GCC
[ENA]
¢þ
>WENV182831090
OKED01001333
[OKED] human gut metagenome; human gut
321
233
-
Leu
TAA
[ENA]
¢þ
>WENV182831086
OKED01001324
[OKED] human gut metagenome; human gut
342
267
-
Thr
TGT
[ENA]
¢þ
>WENV182831094
OKED01001412
[OKED] human gut metagenome; human gut
353
279
-
Ala
TGC
[ENA]
¢þ
>WENV182831085
OKED01001324
[OKED] human gut metagenome; human gut
431
348
-
Leu
TAG
[ENA]
¢þ
>WENV182831093
OKED01001412
[OKED] human gut metagenome; human gut
439
366
-
Pro
TGG
[ENA]
¢þ
>WENV182831083
OKED01001298
[OKED] human gut metagenome; human gut
474
548
+
Glu
TTC
[ENA]
¢þ
>WENV182831084
OKED01001324
[OKED] human gut metagenome; human gut
520
446
-
Lys
TTT
[ENA]
¢þ
>WENV182831053
OKED01000018
[OKED] human gut metagenome; human gut
545
620
+
Asn
GTT
[ENA]
¢þ
>WENV182831081
OKED01001172
[OKED] human gut metagenome; human gut
561
651
+
Ser
TGA
[ENA]
¢þ
>WENV182831077
OKED01000724
[OKED] human gut metagenome; human gut
1068
1143
+
Pro
TGG
[ENA]
¢þ
>WENV182831074
OKED01000424
[OKED] human gut metagenome; human gut
1430
1520
+
Ser
GCT
[ENA]
¢þ
>WENV182831048
OKED01000004
[OKED] human gut metagenome; human gut
1487
1413
-
Lys
CTT
[ENA]
¢þ
>WENV182831069
OKED01000098
[OKED] human gut metagenome; human gut
1931
1857
-
Asn
GTT
[ENA]
¢þ
>WENV182831071
OKED01000208
[OKED] human gut metagenome; human gut
2691
2774
+
Leu
TAG
[ENA]
¢þ
>WENV182831072
OKED01000208
[OKED] human gut metagenome; human gut
2801
2875
+
Gly
GCC
[ENA]
¢þ
>WENV182831070
OKED01000155
[OKED] human gut metagenome; human gut
3040
2965
-
Ile2
CAT
[ENA]
¢þ
>WENV182831068
OKED01000039
[OKED] human gut metagenome; human gut
12350
12277
-
Pro
TGG
[ENA]
¢þ
>WENV182831052
OKED01000012
[OKED] human gut metagenome; human gut
16017
15944
-
Ile2
CAT
[ENA]
¢þ
>WENV182831067
OKED01000035
[OKED] human gut metagenome; human gut
17720
17635
-
Leu
CAA
[ENA]
¢þ
>WENV182831066
OKED01000035
[OKED] human gut metagenome; human gut
17803
17733
-
Cys
GCA
[ENA]
¢þ
>WENV182831065
OKED01000035
[OKED] human gut metagenome; human gut
17901
17828
-
Gln
TTG
[ENA]
¢þ
>WENV182831064
OKED01000035
[OKED] human gut metagenome; human gut
17987
17914
-
His
GTG
[ENA]
¢þ
>WENV182831063
OKED01000035
[OKED] human gut metagenome; human gut
18097
18024
-
Trp
CCA
[ENA]
¢þ
>WENV182831062
OKED01000035
[OKED] human gut metagenome; human gut
18183
18101
-
Tyr
GTA
[ENA]
¢þ
>WENV182831061
OKED01000035
[OKED] human gut metagenome; human gut
18260
18188
-
Phe
GAA
[ENA]
¢þ
>WENV182831060
OKED01000035
[OKED] human gut metagenome; human gut
18381
18306
-
Asp
GTC
[ENA]
¢þ
>WENV182831059
OKED01000035
[OKED] human gut metagenome; human gut
18465
18391
-
Val
TAC
[ENA]
¢þ
>WENV182831058
OKED01000035
[OKED] human gut metagenome; human gut
18564
18491
-
Glu
TTC
[ENA]
¢þ
>WENV182831057
OKED01000035
[OKED] human gut metagenome; human gut
18670
18580
-
Ser
GGA
[ENA]
¢þ
>WENV182831056
OKED01000029
[OKED] human gut metagenome; human gut
21776
21849
+
Arg
CCG
[ENA]
¢þ
>WENV182831050
OKED01000009
[OKED] human gut metagenome; human gut
22609
22534
-
Arg
TCT
[ENA]
¢þ
>WENV182831054
OKED01000018
[OKED] human gut metagenome; human gut
32120
32209
+
Ser
CGA
[ENA]
¢þ
>WENV182831055
OKED01000022
[OKED] human gut metagenome; human gut
33957
33882
-
Thr
GGT
[ENA]
¢þ
>WENV182831051
OKED01000012
[OKED] human gut metagenome; human gut
39708
39637
-
Asn
GTT
[ENA]
¢þ
>WENV182831045
OKED01000003
[OKED] human gut metagenome; human gut
50533
50462
-
Trp
CCA
[ENA]
¢þ
>WENV182831049
OKED01000009
[OKED] human gut metagenome; human gut
71947
72022
+
Arg
CCT
[ENA]
¢þ
>WENV182831044
OKED01000003
[OKED] human gut metagenome; human gut
104220
104292
+
Thr
GGT
[ENA]
¢þ
>WENV182831047
OKED01000004
[OKED] human gut metagenome; human gut
154316
154243
-
Glu
TTC
[ENA]
¢þ
>WENV182831046
OKED01000004
[OKED] human gut metagenome; human gut
154419
154330
-
Ser
GCT
[ENA]
¢þ
>WENV182831043
OKED01000002
[OKED] human gut metagenome; human gut
225561
225633
+
Thr
CGT
[ENA]
¢þ
>WENV182831042
OKED01000001
[OKED] human gut metagenome; human gut
273320
273247
-
Gln
TTG
[ENA]
¢þ
>WENV182831041
OKED01000001
[OKED] human gut metagenome; human gut
273410
273328
-
Tyr
GTA
[ENA]
¢þ
>WENV182831040
OKED01000001
[OKED] human gut metagenome; human gut
284744
284658
-
Leu
GAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK