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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OKEN] human gut metagenome; human gut
HIT:
68 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182832527
OKEN01003806
[OKEN] human gut metagenome; human gut
60
132
+
Lys
TTT
[ENA]
¢þ
>WENV182832476
OKEN01000191
[OKEN] human gut metagenome; human gut
93
18
-
His
GTG
[ENA]
¢þ
>WENV182832487
OKEN01001489
[OKEN] human gut metagenome; human gut
105
176
+
Gly
GCC
[ENA]
¢þ
>WENV182832532
OKEN01003879
[OKEN] human gut metagenome; human gut
106
181
+
Gly
GCC
[ENA]
¢þ
>WENV182832514
OKEN01002223
[OKEN] human gut metagenome; human gut
124
36
-
Leu
TAA
[ENA]
¢þ
>WENV182832474
OKEN01000092
[OKEN] human gut metagenome; human gut
133
59
-
Gly
TCC
[ENA]
¢þ
>WENV182832482
OKEN01001153
[OKEN] human gut metagenome; human gut
151
59
-
Ser
GCT
[ENA]
¢þ
>WENV182832501
OKEN01001839
[OKEN] human gut metagenome; human gut
155
81
-
Gln
CTG
[ENA]
¢þ
>WENV182832528
OKEN01003806
[OKEN] human gut metagenome; human gut
166
240
+
Gly
GCC
[ENA]
¢þ
>WENV182832488
OKEN01001489
[OKEN] human gut metagenome; human gut
187
274
+
Leu
TAA
[ENA]
¢þ
>WENV182832513
OKEN01002223
[OKEN] human gut metagenome; human gut
204
130
-
Asn
GTT
[ENA]
¢þ
>WENV182832519
OKEN01002949
[OKEN] human gut metagenome; human gut
219
294
+
Asn
GTT
[ENA]
¢þ
>WENV182832475
OKEN01000191
[OKEN] human gut metagenome; human gut
225
149
-
Arg
CCG
[ENA]
¢þ
>WENV182832470
OKEN01000065
[OKEN] human gut metagenome; human gut
228
152
-
Pro
CGG
[ENA]
¢þ
>WENV182832526
OKEN01003691
[OKEN] human gut metagenome; human gut
242
315
+
Thr
CGT
[ENA]
¢þ
>WENV182832529
OKEN01003806
[OKEN] human gut metagenome; human gut
251
339
+
Leu
TAA
[ENA]
¢þ
>WENV182832500
OKEN01001839
[OKEN] human gut metagenome; human gut
277
201
-
Met
CAT
[ENA]
¢þ
>WENV182832512
OKEN01002223
[OKEN] human gut metagenome; human gut
284
211
-
Cys
GCA
[ENA]
¢þ
>WENV182832489
OKEN01001489
[OKEN] human gut metagenome; human gut
284
357
+
Arg
ACG
[ENA]
¢þ
>WENV182832525
OKEN01003394
[OKEN] human gut metagenome; human gut
306
232
-
Pro
TGG
[ENA]
¢þ
>WENV182832473
OKEN01000092
[OKEN] human gut metagenome; human gut
337
253
-
Tyr
GTA
[ENA]
¢þ
>WENV182832530
OKEN01003806
[OKEN] human gut metagenome; human gut
357
432
+
Arg
ACG
[ENA]
¢þ
>WENV182832490
OKEN01001489
[OKEN] human gut metagenome; human gut
363
436
+
Pro
TGG
[ENA]
¢þ
>WENV182832511
OKEN01002223
[OKEN] human gut metagenome; human gut
367
292
-
Lys
TTT
[ENA]
¢þ
>WENV182832523
OKEN01003043
[OKEN] human gut metagenome; human gut
391
305
-
Leu
CAA
[ENA]
¢þ
>WENV182832517
OKEN01002504
[OKEN] human gut metagenome; human gut
394
308
-
Leu
TAA
[ENA]
¢þ
>WENV182832472
OKEN01000092
[OKEN] human gut metagenome; human gut
423
348
-
Thr
TGT
[ENA]
¢þ
>WENV182832531
OKEN01003806
[OKEN] human gut metagenome; human gut
441
514
+
Pro
TGG
[ENA]
¢þ
>WENV182832510
OKEN01002223
[OKEN] human gut metagenome; human gut
452
376
-
His
GTG
[ENA]
¢þ
>WENV182832479
OKEN01000297
[OKEN] human gut metagenome; human gut
461
555
+
SeC
TCA
[ENA]
¢þ
>WENV182832491
OKEN01001489
[OKEN] human gut metagenome; human gut
464
538
+
Met
CAT
[ENA]
¢þ
>WENV182832516
OKEN01002504
[OKEN] human gut metagenome; human gut
481
408
-
Cys
GCA
[ENA]
¢þ
>WENV182832524
OKEN01003394
[OKEN] human gut metagenome; human gut
505
578
+
Gly
TCC
[ENA]
¢þ
>WENV182832522
OKEN01003043
[OKEN] human gut metagenome; human gut
511
441
-
Cys
GCA
[ENA]
¢þ
>WENV182832502
OKEN01002043
[OKEN] human gut metagenome; human gut
530
604
+
Asn
GTT
[ENA]
¢þ
>WENV182832509
OKEN01002223
[OKEN] human gut metagenome; human gut
536
460
-
Pro
TGG
[ENA]
¢þ
>WENV182832492
OKEN01001489
[OKEN] human gut metagenome; human gut
566
639
+
Ile2
CAT
[ENA]
¢þ
>WENV182832477
OKEN01000245
[OKEN] human gut metagenome; human gut
573
649
+
Ile
GAT
[ENA]
¢þ
>WENV182832515
OKEN01002504
[OKEN] human gut metagenome; human gut
595
520
-
Gly
GCC
[ENA]
¢þ
>WENV182832503
OKEN01002043
[OKEN] human gut metagenome; human gut
605
678
+
Glu
TTC
[ENA]
¢þ
>WENV182832499
OKEN01001614
[OKEN] human gut metagenome; human gut
625
552
-
Gly
CCC
[ENA]
¢þ
>WENV182832521
OKEN01003043
[OKEN] human gut metagenome; human gut
629
556
-
Gln
TTG
[ENA]
¢þ
>WENV182832508
OKEN01002223
[OKEN] human gut metagenome; human gut
636
560
-
Ile2
CAT
[ENA]
¢þ
>WENV182832493
OKEN01001489
[OKEN] human gut metagenome; human gut
649
741
+
Ser
TGA
[ENA]
¢þ
>WENV182832478
OKEN01000245
[OKEN] human gut metagenome; human gut
668
743
+
Ala
TGC
[ENA]
¢þ
>WENV182832518
OKEN01002764
[OKEN] human gut metagenome; human gut
682
606
-
Asp
GTC
[ENA]
¢þ
>WENV182832520
OKEN01003043
[OKEN] human gut metagenome; human gut
708
635
-
His
GTG
[ENA]
¢þ
>WENV182832507
OKEN01002223
[OKEN] human gut metagenome; human gut
724
650
-
Met
CAT
[ENA]
¢þ
>WENV182832504
OKEN01002043
[OKEN] human gut metagenome; human gut
732
820
+
Ser
GGA
[ENA]
¢þ
>WENV182832494
OKEN01001489
[OKEN] human gut metagenome; human gut
755
830
+
fMet
CAT
[ENA]
¢þ
>WENV182832506
OKEN01002223
[OKEN] human gut metagenome; human gut
806
731
-
Phe
GAA
[ENA]
¢þ
>WENV182832495
OKEN01001489
[OKEN] human gut metagenome; human gut
839
914
+
Asp
GTC
[ENA]
¢þ
>WENV182832485
OKEN01001376
[OKEN] human gut metagenome; human gut
847
923
+
Ile
GAT
[ENA]
¢þ
>WENV182832505
OKEN01002223
[OKEN] human gut metagenome; human gut
886
810
-
Ile
GAT
[ENA]
¢þ
>WENV182832483
OKEN01001181
[OKEN] human gut metagenome; human gut
908
983
+
Asn
GTT
[ENA]
¢þ
>WENV182832496
OKEN01001489
[OKEN] human gut metagenome; human gut
932
1006
+
Phe
GAA
[ENA]
¢þ
>WENV182832497
OKEN01001489
[OKEN] human gut metagenome; human gut
1013
1088
+
Thr
TGT
[ENA]
¢þ
>WENV182832480
OKEN01000317
[OKEN] human gut metagenome; human gut
1029
1116
+
Ser
GGA
[ENA]
¢þ
>WENV182832486
OKEN01001376
[OKEN] human gut metagenome; human gut
1032
1107
+
Ala
TGC
[ENA]
¢þ
>WENV182832498
OKEN01001489
[OKEN] human gut metagenome; human gut
1094
1177
+
Tyr
GTA
[ENA]
¢þ
>WENV182832484
OKEN01001357
[OKEN] human gut metagenome; human gut
1126
1199
+
Arg
CCT
[ENA]
¢þ
>WENV182832481
OKEN01000434
[OKEN] human gut metagenome; human gut
2293
2218
-
Thr
GGT
[ENA]
¢þ
>WENV182832471
OKEN01000084
[OKEN] human gut metagenome; human gut
2333
2258
-
Ala
TGC
[ENA]
¢þ
>WENV182832469
OKEN01000059
[OKEN] human gut metagenome; human gut
2611
2536
-
Lys
TTT
[ENA]
¢þ
>WENV182832468
OKEN01000059
[OKEN] human gut metagenome; human gut
2722
2647
-
Lys
TTT
[ENA]
¢þ
>WENV182832467
OKEN01000059
[OKEN] human gut metagenome; human gut
2802
2727
-
Val
TAC
[ENA]
¢þ
>WENV182832466
OKEN01000031
[OKEN] human gut metagenome; human gut
4665
4751
+
Leu
CAG
[ENA]
¢þ
>WENV182832465
OKEN01000004
[OKEN] human gut metagenome; human gut
5227
5151
-
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK