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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKEQ] human gut metagenome; human gut
HIT:
82 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182833046
OKEQ01004459
[OKEQ] human gut metagenome; human gut
86
162
+
Arg
CCT
[ENA]
¢þ
>WENV182833060
OKEQ01007697
[OKEQ] human gut metagenome; human gut
140
51
-
Ser
CGA
[ENA]
¢þ
>WENV182833029
OKEQ01001283
[OKEQ] human gut metagenome; human gut
158
82
-
Arg
TCT
[ENA]
¢þ
>WENV182833044
OKEQ01003383
[OKEQ] human gut metagenome; human gut
216
302
+
Leu
GAG
[ENA]
¢þ
>WENV182833033
OKEQ01002395
[OKEQ] human gut metagenome; human gut
222
146
-
Pro
GGG
[ENA]
¢þ
>WENV182833061
OKEQ01007772
[OKEQ] human gut metagenome; human gut
229
147
-
Tyr
GTA
[ENA]
¢þ
>WENV182833054
OKEQ01006438
[OKEQ] human gut metagenome; human gut
233
306
+
Sup
TTA
[ENA]
¢þ
>WENV182833058
OKEQ01007414
[OKEQ] human gut metagenome; human gut
248
322
+
Glu
TTC
[ENA]
¢þ
>WENV182833049
OKEQ01004724
[OKEQ] human gut metagenome; human gut
275
351
+
Arg
TCT
[ENA]
¢þ
>WENV182833030
OKEQ01002013
[OKEQ] human gut metagenome; human gut
290
203
-
Ser
TGA
[ENA]
¢þ
>WENV182833063
OKEQ01008176
[OKEQ] human gut metagenome; human gut
293
211
-
Leu
TAG
[ENA]
¢þ
>WENV182833050
OKEQ01004945
[OKEQ] human gut metagenome; human gut
313
388
+
Ala
TGC
[ENA]
¢þ
>WENV182833059
OKEQ01007414
[OKEQ] human gut metagenome; human gut
330
402
+
Val
TAC
[ENA]
¢þ
>WENV182833057
OKEQ01007266
[OKEQ] human gut metagenome; human gut
351
425
+
Arg
TCT
[ENA]
¢þ
>WENV182833028
OKEQ01001270
[OKEQ] human gut metagenome; human gut
369
453
+
Leu
TAG
[ENA]
¢þ
>WENV182833055
OKEQ01006438
[OKEQ] human gut metagenome; human gut
379
453
+
Asp
GTC
[ENA]
¢þ
>WENV182833048
OKEQ01004613
[OKEQ] human gut metagenome; human gut
380
453
+
Gly
CCC
[ENA]
¢þ
>WENV182833056
OKEQ01006638
[OKEQ] human gut metagenome; human gut
403
478
+
Lys
TTT
[ENA]
¢þ
>WENV182833035
OKEQ01002632
[OKEQ] human gut metagenome; human gut
413
488
+
Thr
TGT
[ENA]
¢þ
>WENV182833034
OKEQ01002567
[OKEQ] human gut metagenome; human gut
430
512
+
Leu
CAG
[ENA]
¢þ
>WENV182833053
OKEQ01006427
[OKEQ] human gut metagenome; human gut
431
505
+
Thr
TGT
[ENA]
¢þ
>WENV182833062
OKEQ01008176
[OKEQ] human gut metagenome; human gut
453
380
-
Thr
CGT
[ENA]
¢þ
>WENV182833036
OKEQ01002632
[OKEQ] human gut metagenome; human gut
497
581
+
Tyr
GTA
[ENA]
¢þ
>WENV182833022
OKEQ01000856
[OKEQ] human gut metagenome; human gut
504
420
-
Leu
CAA
[ENA]
¢þ
>WENV182833052
OKEQ01006336
[OKEQ] human gut metagenome; human gut
516
589
+
Arg
CCT
[ENA]
¢þ
>WENV182833051
OKEQ01005534
[OKEQ] human gut metagenome; human gut
517
591
+
Arg
CCG
[ENA]
¢þ
>WENV182832991
OKEQ01000298
[OKEQ] human gut metagenome; human gut
534
608
+
Ala
TGC
[ENA]
¢þ
>WENV182833040
OKEQ01003076
[OKEQ] human gut metagenome; human gut
553
478
-
Ala
GGC
[ENA]
¢þ
>WENV182833042
OKEQ01003180
[OKEQ] human gut metagenome; human gut
565
493
-
Asn
GTT
[ENA]
¢þ
>WENV182833047
OKEQ01004509
[OKEQ] human gut metagenome; human gut
566
492
-
Trp
CCA
[ENA]
¢þ
>WENV182832988
OKEQ01000227
[OKEQ] human gut metagenome; human gut
574
489
-
Ser
GGA
[ENA]
¢þ
>WENV182833025
OKEQ01000936
[OKEQ] human gut metagenome; human gut
633
558
-
Phe
GAA
[ENA]
¢þ
>WENV182833026
OKEQ01001128
[OKEQ] human gut metagenome; human gut
664
739
+
Lys
CTT
[ENA]
¢þ
>WENV182833041
OKEQ01003155
[OKEQ] human gut metagenome; human gut
697
622
-
Ile2
CAT
[ENA]
¢þ
>WENV182833037
OKEQ01002632
[OKEQ] human gut metagenome; human gut
698
772
+
Gly
TCC
[ENA]
¢þ
>WENV182833019
OKEQ01000819
[OKEQ] human gut metagenome; human gut
742
818
+
Arg
CCG
[ENA]
¢þ
>WENV182833045
OKEQ01003599
[OKEQ] human gut metagenome; human gut
758
685
-
Lys
CTT
[ENA]
¢þ
>WENV182833038
OKEQ01002632
[OKEQ] human gut metagenome; human gut
779
854
+
Thr
GGT
[ENA]
¢þ
>WENV182833043
OKEQ01003380
[OKEQ] human gut metagenome; human gut
790
715
-
Trp
CCA
[ENA]
¢þ
>WENV182833024
OKEQ01000868
[OKEQ] human gut metagenome; human gut
852
763
-
Ser
GCT
[ENA]
¢þ
>WENV182833039
OKEQ01002916
[OKEQ] human gut metagenome; human gut
874
798
-
Asp
GTC
[ENA]
¢þ
>WENV182833020
OKEQ01000819
[OKEQ] human gut metagenome; human gut
886
961
+
His
GTG
[ENA]
¢þ
>WENV182833009
OKEQ01000444
[OKEQ] human gut metagenome; human gut
913
826
-
Ser
GGA
[ENA]
¢þ
>WENV182833031
OKEQ01002030
[OKEQ] human gut metagenome; human gut
940
864
-
Pro
TGG
[ENA]
¢þ
>WENV182832989
OKEQ01000247
[OKEQ] human gut metagenome; human gut
965
889
-
Pro
CGG
[ENA]
¢þ
>WENV182833021
OKEQ01000819
[OKEQ] human gut metagenome; human gut
982
1068
+
Leu
CAG
[ENA]
¢þ
>WENV182833032
OKEQ01002260
[OKEQ] human gut metagenome; human gut
1057
1130
+
Thr
CGT
[ENA]
¢þ
>WENV182833013
OKEQ01000532
[OKEQ] human gut metagenome; human gut
1069
1163
+
SeC
TCA
[ENA]
¢þ
>WENV182833023
OKEQ01000868
[OKEQ] human gut metagenome; human gut
1089
1002
-
Ser
TGA
[ENA]
¢þ
>WENV182833010
OKEQ01000481
[OKEQ] human gut metagenome; human gut
1138
1222
+
Tyr
GTA
[ENA]
¢þ
>WENV182833015
OKEQ01000585
[OKEQ] human gut metagenome; human gut
1208
1133
-
Lys
TTT
[ENA]
¢þ
>WENV182833014
OKEQ01000585
[OKEQ] human gut metagenome; human gut
1288
1213
-
Val
TAC
[ENA]
¢þ
>WENV182833016
OKEQ01000611
[OKEQ] human gut metagenome; human gut
1312
1237
-
Asn
GTT
[ENA]
¢þ
>WENV182833027
OKEQ01001232
[OKEQ] human gut metagenome; human gut
1371
1448
+
His
GTG
[ENA]
¢þ
>WENV182832994
OKEQ01000345
[OKEQ] human gut metagenome; human gut
1384
1458
+
Val
TAC
[ENA]
¢þ
>WENV182832995
OKEQ01000345
[OKEQ] human gut metagenome; human gut
1483
1555
+
Asp
GTC
[ENA]
¢þ
>WENV182832993
OKEQ01000308
[OKEQ] human gut metagenome; human gut
1521
1445
-
Arg
ACG
[ENA]
¢þ
>WENV182832996
OKEQ01000345
[OKEQ] human gut metagenome; human gut
1583
1655
+
Lys
TTT
[ENA]
¢þ
>WENV182832992
OKEQ01000308
[OKEQ] human gut metagenome; human gut
1618
1526
-
Ser
GCT
[ENA]
¢þ
>WENV182832997
OKEQ01000345
[OKEQ] human gut metagenome; human gut
1665
1746
+
Leu
TAG
[ENA]
¢þ
>WENV182832983
OKEQ01000101
[OKEQ] human gut metagenome; human gut
1680
1755
+
Glu
TTC
[ENA]
¢þ
>WENV182833018
OKEQ01000709
[OKEQ] human gut metagenome; human gut
1711
1786
+
Gly
GCC
[ENA]
¢þ
>WENV182832998
OKEQ01000345
[OKEQ] human gut metagenome; human gut
1757
1829
+
Thr
TGT
[ENA]
¢þ
>WENV182832999
OKEQ01000345
[OKEQ] human gut metagenome; human gut
1849
1920
+
Gly
GCC
[ENA]
¢þ
>WENV182833017
OKEQ01000622
[OKEQ] human gut metagenome; human gut
1867
1940
+
Gly
CCC
[ENA]
¢þ
>WENV182833012
OKEQ01000496
[OKEQ] human gut metagenome; human gut
1881
1808
-
Glu
CTC
[ENA]
¢þ
>WENV182833008
OKEQ01000427
[OKEQ] human gut metagenome; human gut
1922
1848
-
Val
GAC
[ENA]
¢þ
>WENV182833000
OKEQ01000345
[OKEQ] human gut metagenome; human gut
1928
2013
+
Leu
TAA
[ENA]
¢þ
>WENV182833011
OKEQ01000496
[OKEQ] human gut metagenome; human gut
1987
1915
-
Gln
CTG
[ENA]
¢þ
>WENV182832987
OKEQ01000193
[OKEQ] human gut metagenome; human gut
2016
1943
-
Arg
CCG
[ENA]
¢þ
>WENV182833001
OKEQ01000345
[OKEQ] human gut metagenome; human gut
2023
2096
+
Arg
ACG
[ENA]
¢þ
>WENV182833007
OKEQ01000427
[OKEQ] human gut metagenome; human gut
2042
1970
-
Val
GAC
[ENA]
¢þ
>WENV182832985
OKEQ01000154
[OKEQ] human gut metagenome; human gut
2075
2151
+
Met
CAT
[ENA]
¢þ
>WENV182832990
OKEQ01000287
[OKEQ] human gut metagenome; human gut
2086
2010
-
fMet
CAT
[ENA]
¢þ
>WENV182833002
OKEQ01000345
[OKEQ] human gut metagenome; human gut
2138
2211
+
Pro
TGG
[ENA]
¢þ
>WENV182833006
OKEQ01000427
[OKEQ] human gut metagenome; human gut
2161
2088
-
Gly
GCC
[ENA]
¢þ
>WENV182832986
OKEQ01000154
[OKEQ] human gut metagenome; human gut
2198
2272
+
Gln
CTG
[ENA]
¢þ
>WENV182833003
OKEQ01000345
[OKEQ] human gut metagenome; human gut
2217
2292
+
Met
CAT
[ENA]
¢þ
>WENV182833004
OKEQ01000345
[OKEQ] human gut metagenome; human gut
2390
2463
+
Glu
TTC
[ENA]
¢þ
>WENV182833005
OKEQ01000345
[OKEQ] human gut metagenome; human gut
2468
2541
+
Asn
GTT
[ENA]
¢þ
>WENV182832984
OKEQ01000143
[OKEQ] human gut metagenome; human gut
2623
2698
+
Thr
CGT
[ENA]
¢þ
>WENV182832982
OKEQ01000017
[OKEQ] human gut metagenome; human gut
4792
4866
+
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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