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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKFD] human gut metagenome; human gut
HIT:
38 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182834537
OKFD01003488
[OKFD] human gut metagenome; human gut
57
133
+
Pro
TGG
[ENA]
¢þ
>WENV182834524
OKFD01001143
[OKFD] human gut metagenome; human gut
67
139
+
Thr
GGT
[ENA]
¢þ
>WENV182834526
OKFD01001392
[OKFD] human gut metagenome; human gut
112
36
-
Arg
TCT
[ENA]
¢þ
>WENV182834522
OKFD01000853
[OKFD] human gut metagenome; human gut
117
191
+
Met
CAT
[ENA]
¢þ
>WENV182834529
OKFD01002078
[OKFD] human gut metagenome; human gut
171
255
+
Leu
CAA
[ENA]
¢þ
>WENV182834533
OKFD01002932
[OKFD] human gut metagenome; human gut
205
115
-
Ser
GGA
[ENA]
¢þ
>WENV182834530
OKFD01002296
[OKFD] human gut metagenome; human gut
300
225
-
Ile2
CAT
[ENA]
¢þ
>WENV182834539
OKFD01004488
[OKFD] human gut metagenome; human gut
333
417
+
Leu
CAA
[ENA]
¢þ
>WENV182834535
OKFD01003161
[OKFD] human gut metagenome; human gut
350
261
-
Ser
CGA
[ENA]
¢þ
>WENV182834536
OKFD01003173
[OKFD] human gut metagenome; human gut
360
432
+
Glu
TTC
[ENA]
¢þ
>WENV182834511
OKFD01000187
[OKFD] human gut metagenome; human gut
413
339
-
Asp
GTC
[ENA]
¢þ
>WENV182834523
OKFD01000991
[OKFD] human gut metagenome; human gut
421
338
-
Tyr
GTA
[ENA]
¢þ
>WENV182834538
OKFD01004147
[OKFD] human gut metagenome; human gut
426
351
-
Asn
GTT
[ENA]
¢þ
>WENV182834534
OKFD01003132
[OKFD] human gut metagenome; human gut
438
525
+
Ser
GGA
[ENA]
¢þ
>WENV182834518
OKFD01000369
[OKFD] human gut metagenome; human gut
439
350
-
Ser
GCT
[ENA]
¢þ
>WENV182834531
OKFD01002729
[OKFD] human gut metagenome; human gut
489
581
+
Ser
GCT
[ENA]
¢þ
>WENV182834532
OKFD01002729
[OKFD] human gut metagenome; human gut
585
661
+
Arg
ACG
[ENA]
¢þ
>WENV182834527
OKFD01001566
[OKFD] human gut metagenome; human gut
729
803
+
Gly
TCC
[ENA]
¢þ
>WENV182834504
OKFD01000063
[OKFD] human gut metagenome; human gut
759
687
-
Arg
CCT
[ENA]
¢þ
>WENV182834528
OKFD01001566
[OKFD] human gut metagenome; human gut
809
884
+
Thr
GGT
[ENA]
¢þ
>WENV182834525
OKFD01001278
[OKFD] human gut metagenome; human gut
1129
1202
+
Phe
GAA
[ENA]
¢þ
>WENV182834519
OKFD01000487
[OKFD] human gut metagenome; human gut
1142
1214
+
Cys
GCA
[ENA]
¢þ
>WENV182834520
OKFD01000520
[OKFD] human gut metagenome; human gut
1216
1289
+
Gly
GCC
[ENA]
¢þ
>WENV182834521
OKFD01000835
[OKFD] human gut metagenome; human gut
1568
1493
-
Phe
GAA
[ENA]
¢þ
>WENV182834514
OKFD01000230
[OKFD] human gut metagenome; human gut
1823
1898
+
Val
TAC
[ENA]
¢þ
>WENV182834510
OKFD01000137
[OKFD] human gut metagenome; human gut
2128
2055
-
Trp
CCA
[ENA]
¢þ
>WENV182834516
OKFD01000250
[OKFD] human gut metagenome; human gut
2146
2072
-
Ala
TGC
[ENA]
¢þ
>WENV182834515
OKFD01000250
[OKFD] human gut metagenome; human gut
2310
2236
-
Ile
GAT
[ENA]
¢þ
>WENV182834507
OKFD01000101
[OKFD] human gut metagenome; human gut
3101
3177
+
Ile
GAT
[ENA]
¢þ
>WENV182834517
OKFD01000308
[OKFD] human gut metagenome; human gut
3192
3266
+
Ala
GGC
[ENA]
¢þ
>WENV182834508
OKFD01000101
[OKFD] human gut metagenome; human gut
3283
3358
+
Ala
TGC
[ENA]
¢þ
>WENV182834512
OKFD01000220
[OKFD] human gut metagenome; human gut
4012
3938
-
Pro
GGG
[ENA]
¢þ
>WENV182834509
OKFD01000127
[OKFD] human gut metagenome; human gut
4751
4677
-
Thr
TGT
[ENA]
¢þ
>WENV182834513
OKFD01000225
[OKFD] human gut metagenome; human gut
4910
4836
-
Asn
GTT
[ENA]
¢þ
>WENV182834506
OKFD01000095
[OKFD] human gut metagenome; human gut
6574
6647
+
Gly
CCC
[ENA]
¢þ
>WENV182834503
OKFD01000032
[OKFD] human gut metagenome; human gut
6981
7054
+
Lys
TTT
[ENA]
¢þ
>WENV182834502
OKFD01000023
[OKFD] human gut metagenome; human gut
7008
7082
+
Ile2
CAT
[ENA]
¢þ
>WENV182834505
OKFD01000065
[OKFD] human gut metagenome; human gut
8017
8092
+
Pro
TGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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