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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKFL] human gut metagenome; human gut
HIT:
40 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182835315
OKFL01001786
[OKFL] human gut metagenome; human gut
1
76
+
Lys
TTT
[ENA]
¢þ
>WENV182835301
OKFL01000823
[OKFL] human gut metagenome; human gut
101
177
+
Asp
GTC
[ENA]
¢þ
>WENV182835316
OKFL01001849
[OKFL] human gut metagenome; human gut
114
190
+
Pro
TGG
[ENA]
¢þ
>WENV182835307
OKFL01001136
[OKFL] human gut metagenome; human gut
144
70
-
Gln
TTG
[ENA]
¢þ
>WENV182835300
OKFL01000822
[OKFL] human gut metagenome; human gut
202
127
-
Glu
TTC
[ENA]
¢þ
>WENV182835287
OKFL01000351
[OKFL] human gut metagenome; human gut
210
285
+
Ile2
CAT
[ENA]
¢þ
>WENV182835314
OKFL01001546
[OKFL] human gut metagenome; human gut
250
324
+
Arg
CCT
[ENA]
¢þ
>WENV182835306
OKFL01001136
[OKFL] human gut metagenome; human gut
252
168
-
Leu
TAG
[ENA]
¢þ
>WENV182835309
OKFL01001440
[OKFL] human gut metagenome; human gut
254
329
+
Thr
TGT
[ENA]
¢þ
>WENV182835302
OKFL01000825
[OKFL] human gut metagenome; human gut
322
249
-
Gly
CCC
[ENA]
¢þ
>WENV182835310
OKFL01001440
[OKFL] human gut metagenome; human gut
338
422
+
Tyr
GTA
[ENA]
¢þ
>WENV182835305
OKFL01001136
[OKFL] human gut metagenome; human gut
339
263
-
Met
CAT
[ENA]
¢þ
>WENV182835311
OKFL01001440
[OKFL] human gut metagenome; human gut
539
613
+
Gly
TCC
[ENA]
¢þ
>WENV182835294
OKFL01000458
[OKFL] human gut metagenome; human gut
553
477
-
Arg
ACG
[ENA]
¢þ
>WENV182835299
OKFL01000741
[OKFL] human gut metagenome; human gut
561
486
-
Asn
GTT
[ENA]
¢þ
>WENV182835303
OKFL01000901
[OKFL] human gut metagenome; human gut
570
494
-
Asp
GTC
[ENA]
¢þ
>WENV182835308
OKFL01001416
[OKFL] human gut metagenome; human gut
574
649
+
Thr
CGT
[ENA]
¢þ
>WENV182835291
OKFL01000418
[OKFL] human gut metagenome; human gut
590
501
-
Ser
CGA
[ENA]
¢þ
>WENV182835312
OKFL01001440
[OKFL] human gut metagenome; human gut
620
695
+
Thr
GGT
[ENA]
¢þ
>WENV182835293
OKFL01000458
[OKFL] human gut metagenome; human gut
694
618
-
Arg
ACG
[ENA]
¢þ
>WENV182835292
OKFL01000458
[OKFL] human gut metagenome; human gut
790
698
-
Ser
GCT
[ENA]
¢þ
>WENV182835289
OKFL01000417
[OKFL] human gut metagenome; human gut
836
761
-
Phe
GAA
[ENA]
¢þ
>WENV182835313
OKFL01001452
[OKFL] human gut metagenome; human gut
883
807
-
Arg
TCT
[ENA]
¢þ
>WENV182835296
OKFL01000480
[OKFL] human gut metagenome; human gut
1030
936
-
SeC
TCA
[ENA]
¢þ
>WENV182835304
OKFL01000904
[OKFL] human gut metagenome; human gut
1030
946
-
Tyr
GTA
[ENA]
¢þ
>WENV182835290
OKFL01000418
[OKFL] human gut metagenome; human gut
1582
1657
+
Asn
GTT
[ENA]
¢þ
>WENV182835295
OKFL01000459
[OKFL] human gut metagenome; human gut
1799
1712
-
Ser
GGA
[ENA]
¢þ
>WENV182835298
OKFL01000614
[OKFL] human gut metagenome; human gut
1992
2067
+
Gly
GCC
[ENA]
¢þ
>WENV182835297
OKFL01000583
[OKFL] human gut metagenome; human gut
2293
2206
-
Ser
TGA
[ENA]
¢þ
>WENV182835288
OKFL01000387
[OKFL] human gut metagenome; human gut
2437
2523
+
Leu
CAG
[ENA]
¢þ
>WENV182835285
OKFL01000260
[OKFL] human gut metagenome; human gut
2605
2689
+
Leu
CAA
[ENA]
¢þ
>WENV182835284
OKFL01000156
[OKFL] human gut metagenome; human gut
2614
2690
+
Pro
GGG
[ENA]
¢þ
>WENV182835283
OKFL01000054
[OKFL] human gut metagenome; human gut
2918
2842
-
Arg
CCG
[ENA]
¢þ
>WENV182835278
OKFL01000002
[OKFL] human gut metagenome; human gut
3314
3238
-
fMet
CAT
[ENA]
¢þ
>WENV182835286
OKFL01000314
[OKFL] human gut metagenome; human gut
3873
3798
-
Ala
GGC
[ENA]
¢þ
>WENV182835279
OKFL01000004
[OKFL] human gut metagenome; human gut
5413
5337
-
Pro
CGG
[ENA]
¢þ
>WENV182835282
OKFL01000050
[OKFL] human gut metagenome; human gut
6355
6279
-
Val
GAC
[ENA]
¢þ
>WENV182835281
OKFL01000050
[OKFL] human gut metagenome; human gut
6436
6360
-
Val
GAC
[ENA]
¢þ
>WENV182835277
OKFL01000002
[OKFL] human gut metagenome; human gut
7181
7095
-
Leu
GAG
[ENA]
¢þ
>WENV182835280
OKFL01000023
[OKFL] human gut metagenome; human gut
7269
7345
+
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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