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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKFN] human gut metagenome; human gut
HIT:
68 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182835427
OKFN01000901
[OKFN] human gut metagenome; human gut
123
198
+
Leu
TAA
[ENA]
¢þ
>WENV182835404
OKFN01000031
[OKFN] human gut metagenome; human gut
206
131
-
Gly
GCC
[ENA]
¢þ
>WENV182835384
OKFN01000009
[OKFN] human gut metagenome; human gut
236
151
-
Leu
CAG
[ENA]
¢þ
>WENV182835403
OKFN01000031
[OKFN] human gut metagenome; human gut
323
251
-
Val
GAC
[ENA]
¢þ
>WENV182835402
OKFN01000031
[OKFN] human gut metagenome; human gut
423
352
-
Cys
GCA
[ENA]
¢þ
>WENV182835401
OKFN01000031
[OKFN] human gut metagenome; human gut
529
454
-
Gly
GCC
[ENA]
¢þ
>WENV182835396
OKFN01000021
[OKFN] human gut metagenome; human gut
554
479
-
Pro
GGG
[ENA]
¢þ
>WENV182835417
OKFN01000109
[OKFN] human gut metagenome; human gut
584
494
-
Ser
GGA
[ENA]
¢þ
>WENV182835426
OKFN01000565
[OKFN] human gut metagenome; human gut
643
570
-
Trp
CCA
[ENA]
¢þ
>WENV182835400
OKFN01000031
[OKFN] human gut metagenome; human gut
646
574
-
Val
GAC
[ENA]
¢þ
>WENV182835416
OKFN01000109
[OKFN] human gut metagenome; human gut
707
636
-
Glu
TTC
[ENA]
¢þ
>WENV182835399
OKFN01000031
[OKFN] human gut metagenome; human gut
769
694
-
Gly
GCC
[ENA]
¢þ
>WENV182835409
OKFN01000043
[OKFN] human gut metagenome; human gut
867
792
-
Glu
CTC
[ENA]
¢þ
>WENV182835398
OKFN01000031
[OKFN] human gut metagenome; human gut
1049
1123
+
Val
CAC
[ENA]
¢þ
>WENV182835425
OKFN01000216
[OKFN] human gut metagenome; human gut
1338
1248
-
Ser
GCT
[ENA]
¢þ
>WENV182835394
OKFN01000017
[OKFN] human gut metagenome; human gut
1352
1278
-
Arg
CCG
[ENA]
¢þ
>WENV182835424
OKFN01000216
[OKFN] human gut metagenome; human gut
1415
1341
-
Asn
GTT
[ENA]
¢þ
>WENV182835408
OKFN01000043
[OKFN] human gut metagenome; human gut
1547
1474
-
Glu
CTC
[ENA]
¢þ
>WENV182835407
OKFN01000043
[OKFN] human gut metagenome; human gut
1654
1582
-
Gln
CTG
[ENA]
¢þ
>WENV182835406
OKFN01000036
[OKFN] human gut metagenome; human gut
2677
2603
-
Pro
TGG
[ENA]
¢þ
>WENV182835405
OKFN01000036
[OKFN] human gut metagenome; human gut
3247
3173
-
Gly
TCC
[ENA]
¢þ
>WENV182835388
OKFN01000014
[OKFN] human gut metagenome; human gut
4631
4703
+
Gln
TTG
[ENA]
¢þ
>WENV182835380
OKFN01000008
[OKFN] human gut metagenome; human gut
6114
6200
+
Leu
GAG
[ENA]
¢þ
>WENV182835423
OKFN01000143
[OKFN] human gut metagenome; human gut
7982
7907
-
Ala
GGC
[ENA]
¢þ
>WENV182835422
OKFN01000141
[OKFN] human gut metagenome; human gut
8033
7960
-
Lys
TTT
[ENA]
¢þ
>WENV182835421
OKFN01000141
[OKFN] human gut metagenome; human gut
8115
8040
-
Thr
TGT
[ENA]
¢þ
>WENV182835420
OKFN01000141
[OKFN] human gut metagenome; human gut
8197
8122
-
Val
TAC
[ENA]
¢þ
>WENV182835410
OKFN01000046
[OKFN] human gut metagenome; human gut
8423
8499
+
Leu
TAA
[ENA]
¢þ
>WENV182835418
OKFN01000125
[OKFN] human gut metagenome; human gut
9118
9204
+
Leu
GAG
[ENA]
¢þ
>WENV182835419
OKFN01000125
[OKFN] human gut metagenome; human gut
9227
9300
+
Gly
TCC
[ENA]
¢þ
>WENV182835412
OKFN01000080
[OKFN] human gut metagenome; human gut
10081
10163
+
Tyr
GTA
[ENA]
¢þ
>WENV182835413
OKFN01000080
[OKFN] human gut metagenome; human gut
10451
10526
+
Thr
GGT
[ENA]
¢þ
>WENV182835414
OKFN01000080
[OKFN] human gut metagenome; human gut
10558
10631
+
Met
CAT
[ENA]
¢þ
>WENV182835415
OKFN01000080
[OKFN] human gut metagenome; human gut
10761
10836
+
Trp
CCA
[ENA]
¢þ
>WENV182835411
OKFN01000074
[OKFN] human gut metagenome; human gut
10812
10904
+
Ser
TGA
[ENA]
¢þ
>WENV182835389
OKFN01000015
[OKFN] human gut metagenome; human gut
16592
16674
+
Leu
TAG
[ENA]
¢þ
>WENV182835385
OKFN01000011
[OKFN] human gut metagenome; human gut
17593
17520
-
Gly
CCC
[ENA]
¢þ
>WENV182835395
OKFN01000018
[OKFN] human gut metagenome; human gut
18469
18543
+
Arg
TCT
[ENA]
¢þ
>WENV182835393
OKFN01000016
[OKFN] human gut metagenome; human gut
19631
19702
+
Arg
CCG
[ENA]
¢þ
>WENV182835365
OKFN01000002
[OKFN] human gut metagenome; human gut
22719
22646
-
Lys
TTT
[ENA]
¢þ
>WENV182835383
OKFN01000009
[OKFN] human gut metagenome; human gut
25448
25375
-
Ala
TGC
[ENA]
¢þ
>WENV182835360
OKFN01000001
[OKFN] human gut metagenome; human gut
26016
25940
-
fMet
CAT
[ENA]
¢þ
>WENV182835382
OKFN01000009
[OKFN] human gut metagenome; human gut
30395
30322
-
Ala
TGC
[ENA]
¢þ
>WENV182835381
OKFN01000009
[OKFN] human gut metagenome; human gut
30481
30405
-
Ile
GAT
[ENA]
¢þ
>WENV182835364
OKFN01000002
[OKFN] human gut metagenome; human gut
33104
33031
-
Val
TAC
[ENA]
¢þ
>WENV182835379
OKFN01000006
[OKFN] human gut metagenome; human gut
35467
35561
+
SeC
TCA
[ENA]
¢þ
>WENV182835397
OKFN01000028
[OKFN] human gut metagenome; human gut
42822
42895
+
Arg
CCT
[ENA]
¢þ
>WENV182835387
OKFN01000013
[OKFN] human gut metagenome; human gut
46867
46792
-
Thr
CGT
[ENA]
¢þ
>WENV182835392
OKFN01000015
[OKFN] human gut metagenome; human gut
47446
47373
-
Lys
CTT
[ENA]
¢þ
>WENV182835391
OKFN01000015
[OKFN] human gut metagenome; human gut
52533
52459
-
His
GTG
[ENA]
¢þ
>WENV182835386
OKFN01000012
[OKFN] human gut metagenome; human gut
53007
52931
-
Leu
CAA
[ENA]
¢þ
>WENV182835363
OKFN01000002
[OKFN] human gut metagenome; human gut
53819
53745
-
Ile2
CAT
[ENA]
¢þ
>WENV182835390
OKFN01000015
[OKFN] human gut metagenome; human gut
57115
57041
-
Arg
TCT
[ENA]
¢þ
>WENV182835362
OKFN01000002
[OKFN] human gut metagenome; human gut
63927
63853
-
Ile2
CAT
[ENA]
¢þ
>WENV182835361
OKFN01000002
[OKFN] human gut metagenome; human gut
64426
64499
+
Asn
GTT
[ENA]
¢þ
>WENV182835366
OKFN01000004
[OKFN] human gut metagenome; human gut
75336
75422
+
Ser
TGA
[ENA]
¢þ
>WENV182835373
OKFN01000005
[OKFN] human gut metagenome; human gut
75764
75837
+
Thr
TGT
[ENA]
¢þ
>WENV182835367
OKFN01000004
[OKFN] human gut metagenome; human gut
83085
83176
+
Ser
GCT
[ENA]
¢þ
>WENV182835368
OKFN01000004
[OKFN] human gut metagenome; human gut
90378
90451
+
Arg
ACG
[ENA]
¢þ
>WENV182835369
OKFN01000004
[OKFN] human gut metagenome; human gut
94277
94367
+
Ser
CGA
[ENA]
¢þ
>WENV182835374
OKFN01000005
[OKFN] human gut metagenome; human gut
126375
126448
+
Lys
TTT
[ENA]
¢þ
>WENV182835375
OKFN01000005
[OKFN] human gut metagenome; human gut
127688
127761
+
Glu
TTC
[ENA]
¢þ
>WENV182835376
OKFN01000005
[OKFN] human gut metagenome; human gut
127811
127887
+
Asp
GTC
[ENA]
¢þ
>WENV182835372
OKFN01000004
[OKFN] human gut metagenome; human gut
128151
128063
-
Ser
GGA
[ENA]
¢þ
>WENV182835377
OKFN01000005
[OKFN] human gut metagenome; human gut
128545
128620
+
Asp
GTC
[ENA]
¢þ
>WENV182835371
OKFN01000004
[OKFN] human gut metagenome; human gut
128581
128493
-
Ser
GGA
[ENA]
¢þ
>WENV182835378
OKFN01000005
[OKFN] human gut metagenome; human gut
128640
128713
+
Phe
GAA
[ENA]
¢þ
>WENV182835370
OKFN01000004
[OKFN] human gut metagenome; human gut
154532
154456
-
Pro
CGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK