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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKFP] human gut metagenome; human gut
HIT:
71 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182835716
OKFP01001415
[OKFP] human gut metagenome; human gut
91
165
+
Arg
TCT
[ENA]
¢þ
>WENV182835670
OKFP01000219
[OKFP] human gut metagenome; human gut
103
179
+
Pro
TGG
[ENA]
¢þ
>WENV182835692
OKFP01000790
[OKFP] human gut metagenome; human gut
130
56
-
Val
TAC
[ENA]
¢þ
>WENV182835657
OKFP01000059
[OKFP] human gut metagenome; human gut
172
86
-
Leu
CAG
[ENA]
¢þ
>WENV182835674
OKFP01000263
[OKFP] human gut metagenome; human gut
188
115
-
Gly
TCC
[ENA]
¢þ
>WENV182835656
OKFP01000059
[OKFP] human gut metagenome; human gut
270
195
-
His
GTG
[ENA]
¢þ
>WENV182835710
OKFP01001082
[OKFP] human gut metagenome; human gut
304
219
-
Ser
CGA
[ENA]
¢þ
>WENV182835655
OKFP01000059
[OKFP] human gut metagenome; human gut
402
326
-
Arg
CCG
[ENA]
¢þ
>WENV182835693
OKFP01000816
[OKFP] human gut metagenome; human gut
459
532
+
Glu
CTC
[ENA]
¢þ
>WENV182835721
OKFP01002380
[OKFP] human gut metagenome; human gut
479
391
-
Leu
GAG
[ENA]
¢þ
>WENV182835658
OKFP01000068
[OKFP] human gut metagenome; human gut
482
406
-
Pro
GGG
[ENA]
¢þ
>WENV182835698
OKFP01000882
[OKFP] human gut metagenome; human gut
535
609
+
Ile2
CAT
[ENA]
¢þ
>WENV182835694
OKFP01000816
[OKFP] human gut metagenome; human gut
571
645
+
Gln
CTG
[ENA]
¢þ
>WENV182835696
OKFP01000818
[OKFP] human gut metagenome; human gut
638
557
-
Leu
TAA
[ENA]
¢þ
>WENV182835717
OKFP01001531
[OKFP] human gut metagenome; human gut
646
573
-
Asn
GTT
[ENA]
¢þ
>WENV182835720
OKFP01002152
[OKFP] human gut metagenome; human gut
656
581
-
Asn
GTT
[ENA]
¢þ
>WENV182835704
OKFP01000957
[OKFP] human gut metagenome; human gut
678
753
+
Gly
GCC
[ENA]
¢þ
>WENV182835718
OKFP01001613
[OKFP] human gut metagenome; human gut
711
785
+
Arg
ACG
[ENA]
¢þ
>WENV182835676
OKFP01000365
[OKFP] human gut metagenome; human gut
736
649
-
Ser
GCT
[ENA]
¢þ
>WENV182835715
OKFP01001382
[OKFP] human gut metagenome; human gut
764
851
+
Ser
GGA
[ENA]
¢þ
>WENV182835699
OKFP01000892
[OKFP] human gut metagenome; human gut
893
820
-
Ala
GGC
[ENA]
¢þ
>WENV182835709
OKFP01001081
[OKFP] human gut metagenome; human gut
935
863
-
Gln
TTG
[ENA]
¢þ
>WENV182835662
OKFP01000118
[OKFP] human gut metagenome; human gut
947
871
-
Arg
ACG
[ENA]
¢þ
>WENV182835707
OKFP01000992
[OKFP] human gut metagenome; human gut
947
1020
+
Thr
CGT
[ENA]
¢þ
>WENV182835719
OKFP01001699
[OKFP] human gut metagenome; human gut
1011
1084
+
Gly
CCC
[ENA]
¢þ
>WENV182835661
OKFP01000118
[OKFP] human gut metagenome; human gut
1044
952
-
Ser
GCT
[ENA]
¢þ
>WENV182835690
OKFP01000745
[OKFP] human gut metagenome; human gut
1098
1172
+
Pro
GGG
[ENA]
¢þ
>WENV182835708
OKFP01000992
[OKFP] human gut metagenome; human gut
1114
1195
+
Leu
TAG
[ENA]
¢þ
>WENV182835663
OKFP01000129
[OKFP] human gut metagenome; human gut
1167
1091
-
fMet
CAT
[ENA]
¢þ
>WENV182835701
OKFP01000944
[OKFP] human gut metagenome; human gut
1206
1131
-
His
GTG
[ENA]
¢þ
>WENV182835705
OKFP01000974
[OKFP] human gut metagenome; human gut
1281
1357
+
Asp
GTC
[ENA]
¢þ
>WENV182835653
OKFP01000015
[OKFP] human gut metagenome; human gut
1319
1404
+
Leu
CAG
[ENA]
¢þ
>WENV182835713
OKFP01001259
[OKFP] human gut metagenome; human gut
1330
1403
+
Gly
CCC
[ENA]
¢þ
>WENV182835703
OKFP01000953
[OKFP] human gut metagenome; human gut
1421
1346
-
Asn
GTT
[ENA]
¢þ
>WENV182835714
OKFP01001369
[OKFP] human gut metagenome; human gut
1499
1413
-
Leu
GAG
[ENA]
¢þ
>WENV182835711
OKFP01001188
[OKFP] human gut metagenome; human gut
1506
1592
+
Ser
TGA
[ENA]
¢þ
>WENV182835664
OKFP01000137
[OKFP] human gut metagenome; human gut
1556
1482
-
Thr
TGT
[ENA]
¢þ
>WENV182835712
OKFP01001211
[OKFP] human gut metagenome; human gut
1718
1793
+
Val
TAC
[ENA]
¢þ
>WENV182835684
OKFP01000578
[OKFP] human gut metagenome; human gut
1806
1880
+
Glu
TTC
[ENA]
¢þ
>WENV182835660
OKFP01000111
[OKFP] human gut metagenome; human gut
1811
1727
-
Leu
CAA
[ENA]
¢þ
>WENV182835706
OKFP01000976
[OKFP] human gut metagenome; human gut
1947
2020
+
Arg
CCT
[ENA]
¢þ
>WENV182835667
OKFP01000183
[OKFP] human gut metagenome; human gut
2001
2076
+
Gly
GCC
[ENA]
¢þ
>WENV182835695
OKFP01000816
[OKFP] human gut metagenome; human gut
2037
1949
-
Ser
GGA
[ENA]
¢þ
>WENV182835700
OKFP01000930
[OKFP] human gut metagenome; human gut
2083
2158
+
Ile2
CAT
[ENA]
¢þ
>WENV182835691
OKFP01000757
[OKFP] human gut metagenome; human gut
2131
2207
+
Asp
GTC
[ENA]
¢þ
>WENV182835675
OKFP01000273
[OKFP] human gut metagenome; human gut
2172
2245
+
Lys
TTT
[ENA]
¢þ
>WENV182835702
OKFP01000953
[OKFP] human gut metagenome; human gut
2413
2502
+
Ser
CGA
[ENA]
¢þ
>WENV182835697
OKFP01000867
[OKFP] human gut metagenome; human gut
2513
2439
-
Leu
CAA
[ENA]
¢þ
>WENV182835680
OKFP01000505
[OKFP] human gut metagenome; human gut
2603
2529
-
Asp
GTC
[ENA]
¢þ
>WENV182835688
OKFP01000702
[OKFP] human gut metagenome; human gut
2823
2748
-
Arg
CCG
[ENA]
¢þ
>WENV182835682
OKFP01000511
[OKFP] human gut metagenome; human gut
2887
2812
-
Thr
CGT
[ENA]
¢þ
>WENV182835689
OKFP01000740
[OKFP] human gut metagenome; human gut
2946
3020
+
Lys
CTT
[ENA]
¢þ
>WENV182835683
OKFP01000566
[OKFP] human gut metagenome; human gut
2951
3038
+
Ser
TGA
[ENA]
¢þ
>WENV182835673
OKFP01000225
[OKFP] human gut metagenome; human gut
3337
3251
-
Leu
TAA
[ENA]
¢þ
>WENV182835687
OKFP01000684
[OKFP] human gut metagenome; human gut
3418
3494
+
Val
GAC
[ENA]
¢þ
>WENV182835672
OKFP01000225
[OKFP] human gut metagenome; human gut
3424
3351
-
Cys
GCA
[ENA]
¢þ
>WENV182835671
OKFP01000225
[OKFP] human gut metagenome; human gut
3538
3463
-
Gly
GCC
[ENA]
¢þ
>WENV182835686
OKFP01000636
[OKFP] human gut metagenome; human gut
3621
3696
+
Thr
TGT
[ENA]
¢þ
>WENV182835679
OKFP01000505
[OKFP] human gut metagenome; human gut
3854
3927
+
Glu
TTC
[ENA]
¢þ
>WENV182835685
OKFP01000588
[OKFP] human gut metagenome; human gut
3864
3940
+
Arg
TCT
[ENA]
¢þ
>WENV182835681
OKFP01000509
[OKFP] human gut metagenome; human gut
4467
4549
+
Tyr
GTA
[ENA]
¢þ
>WENV182835669
OKFP01000214
[OKFP] human gut metagenome; human gut
4676
4770
+
SeC
TCA
[ENA]
¢þ
>WENV182835678
OKFP01000482
[OKFP] human gut metagenome; human gut
4738
4814
+
Pro
CGG
[ENA]
¢þ
>WENV182835677
OKFP01000465
[OKFP] human gut metagenome; human gut
4854
4781
-
Ala
TGC
[ENA]
¢þ
>WENV182835665
OKFP01000172
[OKFP] human gut metagenome; human gut
6092
6168
+
Met
CAT
[ENA]
¢þ
>WENV182835666
OKFP01000172
[OKFP] human gut metagenome; human gut
6213
6287
+
Gln
CTG
[ENA]
¢þ
>WENV182835654
OKFP01000019
[OKFP] human gut metagenome; human gut
6888
6813
-
Phe
GAA
[ENA]
¢þ
>WENV182835668
OKFP01000185
[OKFP] human gut metagenome; human gut
8052
7977
-
Ala
GGC
[ENA]
¢þ
>WENV182835659
OKFP01000093
[OKFP] human gut metagenome; human gut
9590
9665
+
Lys
TTT
[ENA]
¢þ
>WENV182835652
OKFP01000005
[OKFP] human gut metagenome; human gut
23031
22955
-
fMet
CAT
[ENA]
¢þ
>WENV182835651
OKFP01000005
[OKFP] human gut metagenome; human gut
23142
23066
-
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK